gene detail

Gene description

TAIR ID: AT1G01320

Short description: Tetratricopeptide repeat (TPR)-like superfamily protein

Pathogen responsiveness: -0.93

General responsiveness: 2.29

Orthologous

Rice: No orthologous gene

Maize: No orthologous gene

Wheat: No orthologous gene

GO biological process

unkown

GO cellular component

cytosol, cytoplasm, nucleus

GO molecular function

unkown

Protein domain

Pfam	PF13424, Tetratricopeptide repeat
Pfam	PF15044, Mitochondrial function, CLU-N-term
Pfam	PF12807, Translation initiation factor eIF3 subunit 135
SMART	SM00028, TPR

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation

Regulator:
AT5G13790, AT2G38250, AT1G24260, AT2G43010, AT4G36990, AT1G76890, AT1G52880

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 1

click to view PPI network

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE56094_WT_HRPA-  view
GSE56094_WT_PSTDC3000  view
GSE26679_EDR1_GC  view

Differentially expressed condition

9 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE11807	Col, ERF104 ox, water 4 h	Col, ERF104 ox, Flg22 4 h	-1.80	4.29E-02
GSE11807	Col, erf104 ko, water 4 h	Col, erf104 ko, Flg22 4 h	-1.89	3.12E-02
GSE17464	Laer, control	Laer, Flg22 2 h	-1.55	4.12E-04
GSE17464	Penta, control	Penta, Flg22 2 h	-2.13	4.74E-06
GSE21920	Col, WT, mock	Col, WT, Pto HopZ1a 6 h	-1.92	1.93E-06
GSE37269	St0, WT, control	St0, WT, TEV 21 d	-1.79	1.23E-02
GSE50526	Col, WT, mock 9 h	Col, WT, A. brassicicola 9 h	-1.75	3.79E-02
GSE5615	Col, WT, water 4 h	Col, WT, HrpZ 4 h	-1.75	7.71E-07
GSE58954	Col, WT, Psm AvrRpt2 0 h	Col, WT, Psm AvrRpt2 6 h	-1.77	5.05E-04