gene detail

Gene description

TAIR ID: AT5G62920

Short description: response regulator 6

Pathogen responsiveness: 0.66

General responsiveness: -0.00

Orthologous

Rice: No orthologous gene

Maize: No orthologous gene

Wheat: No orthologous gene

GO biological process

cytokinin-activated signaling pathway, response to cytokinin, phosphorelay signal transduction system, transcription, DNA-templated, regulation of transcription

GO cellular component

intracellular, nucleus

GO molecular function

phosphorelay response regulator activity, protein binding

Protein domain

Pfam	PF00072, Response regulator receiver domain
SMART	SM00448, REC

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

PATH:ath04075: Plant hormone signal transduction

Transcriptional regulation

Regulator:
AT2G17950, AT3G24050, AT3G16857, AT4G16110, AT4G31920

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 6

click to view PPI network

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE13739_WT_GO  view
GSE13739_EDS16_GO  view
GSE5686_WT_GO  view
GSE56094_WT_PSTDC3000  view
GSE45212_MED14_PSTDC3000_AVRRPT2  view

Differentially expressed condition

31 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE12856	Col, ataf1, control	Col, ataf1, Bg h	-1.78	2.88E-05
GSE13739	Col, WT, control 0 h	Col, WT, G.orontii 6 h	-1.90	2.20E-05
GSE13739	Col, eds, control 0 h	Col, eds, G.orontii 6 h	-1.62	2.64E-04
GSE17464	Laer, control	Laer, Alternaria brassicicola 3 d	2.30	6.69E-16
GSE17464	Laer, control	Laer, PstDC3000 12 h	2.36	6.00E-16
GSE17500	Col, 35S:AFB1, control 0 h	Col, 35S:AFB1, PstDC3000 24 h	-3.00	9.57E-06
GSE17500	Col, WT, control 0 h	Col, WT, PstDC3000 24 h	-3.30	1.82E-06
GSE17500	Col, miR393, control 0 h	Col, miR393, PstDC3000 24 h	-2.96	8.58E-06
GSE18978	Col, WT, control 24 h	Col, WT, PsmES4326 24 h	-2.78	1.40E-08
GSE21920	Col, WT, mock	Col, WT, Pto HopZ1a 6 h	-1.73	2.15E-06
GSE26206	Col, WT, control	Col, WT, R.solani_AG8 7 d	-2.47	5.36E-08
GSE40544	Col, WT, control	Col, WT, PstDC3000 AvrRpt2	-2.29	1.92E-05
GSE40544	Col, WT, control	Col, WT, PstDC3000 EV	-2.24	2.03E-05
GSE40544	Col, Sid2, control	Col, Sid2, PstDC3000 AvrRpt2	-2.73	3.17E-06
GSE40544	Col, Sid2, control	Col, Sid2, PstDC3000 EV	-1.69	9.14E-04
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 12 h	-2.40	3.84E-14
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 8 h	-2.27	1.26E-13
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 12 h	-3.29	8.15E-16
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 4 h	-2.85	5.14E-15
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 8 h	-3.19	1.03E-15
GSE45214	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 4 h	-2.11	8.01E-08
GSE45214	Col, med16, PstDC3000 AvrRpt2 0 h	Col, med16, PstDC3000 AvrRpt2 4 h	-2.81	5.41E-10
GSE52979	Col, WT, acetone	Col, WT, acetone flg22_2 h	-2.11	3.20E-06
GSE52979	Col, WT, oxo_C14_HSL	Col, WT, oxo_C14_HSL flg22_2 h	-2.22	1.44E-06
GSE5520	Col, WT, control 10 h	Col, WT, Cor- 10 h	-1.76	1.11E-04
GSE5615	Col, WT, water 4 h	Col, WT, HrpZ 4 h	-1.70	1.50E-05
GSE5616	Col, WT, water 12 h	Col, WT, P. infestans 12 h	-1.71	8.28E-03
GSE58954	Col, WT, Psm AvrRpt2 0 h	Col, WT, Psm AvrRpt2 6 h	-2.45	4.22E-03
GSE6556	Col, gh3.5, control	Col, gh3.5, PstDC3000 AvrRpt2 48 h	-2.98	2.28E-05
GSE9674	Ws-4, AtMYB30 ox, control	Ws-4, AtMYB30 ox, Xanthomonas strain Xcc147 2-4 h	-1.55	3.52E-02
GSE9674	Ws-4, AtMYB30 ox, control	Ws-4, AtMYB30 ox, Xanthomonas strain Xcc147 6 h	-2.49	5.57E-03