co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G62920

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1903224: regulation of endodermal cell differentiation	0.00E+00
2	GO:0000489: maturation of SSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)	0.00E+00
3	GO:0007638: mechanosensory behavior	0.00E+00
4	GO:0006003: fructose 2,6-bisphosphate metabolic process	0.00E+00
5	GO:0010480: microsporocyte differentiation	0.00E+00
6	GO:0097164: ammonium ion metabolic process	0.00E+00
7	GO:0000488: maturation of LSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)	0.00E+00
8	GO:0045184: establishment of protein localization	0.00E+00
9	GO:0015843: methylammonium transport	0.00E+00
10	GO:0031222: arabinan catabolic process	0.00E+00
11	GO:0070979: protein K11-linked ubiquitination	0.00E+00
12	GO:0061157: mRNA destabilization	0.00E+00
13	GO:0018131: oxazole or thiazole biosynthetic process	0.00E+00
14	GO:0000455: enzyme-directed rRNA pseudouridine synthesis	0.00E+00
15	GO:0009157: deoxyribonucleoside monophosphate biosynthetic process	0.00E+00
16	GO:1901698: response to nitrogen compound	0.00E+00
17	GO:0010068: protoderm histogenesis	0.00E+00
18	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.32E-07
19	GO:0006468: protein phosphorylation	3.10E-05
20	GO:0046620: regulation of organ growth	3.68E-05
21	GO:2000038: regulation of stomatal complex development	1.67E-04
22	GO:0032876: negative regulation of DNA endoreduplication	2.54E-04
23	GO:0040008: regulation of growth	2.97E-04
24	GO:0000160: phosphorelay signal transduction system	4.95E-04
25	GO:0090558: plant epidermis development	5.60E-04
26	GO:0035987: endodermal cell differentiation	5.60E-04
27	GO:0043609: regulation of carbon utilization	5.60E-04
28	GO:0006436: tryptophanyl-tRNA aminoacylation	5.60E-04
29	GO:0000066: mitochondrial ornithine transport	5.60E-04
30	GO:0034757: negative regulation of iron ion transport	5.60E-04
31	GO:0042659: regulation of cell fate specification	5.60E-04
32	GO:0070509: calcium ion import	5.60E-04
33	GO:0048437: floral organ development	6.09E-04
34	GO:0006002: fructose 6-phosphate metabolic process	9.22E-04
35	GO:0000373: Group II intron splicing	1.10E-03
36	GO:0070981: L-asparagine biosynthetic process	1.20E-03
37	GO:0010569: regulation of double-strand break repair via homologous recombination	1.20E-03
38	GO:0010271: regulation of chlorophyll catabolic process	1.20E-03
39	GO:0031537: regulation of anthocyanin metabolic process	1.20E-03
40	GO:0071497: cellular response to freezing	1.20E-03
41	GO:0009786: regulation of asymmetric cell division	1.20E-03
42	GO:0006529: asparagine biosynthetic process	1.20E-03
43	GO:2000123: positive regulation of stomatal complex development	1.20E-03
44	GO:0009638: phototropism	1.30E-03
45	GO:0009736: cytokinin-activated signaling pathway	1.54E-03
46	GO:0048229: gametophyte development	1.75E-03
47	GO:0031145: anaphase-promoting complex-dependent catabolic process	1.98E-03
48	GO:0051604: protein maturation	1.98E-03
49	GO:0001578: microtubule bundle formation	1.98E-03
50	GO:0071705: nitrogen compound transport	1.98E-03
51	GO:0016050: vesicle organization	1.98E-03
52	GO:0090708: specification of plant organ axis polarity	1.98E-03
53	GO:0080117: secondary growth	1.98E-03
54	GO:0006000: fructose metabolic process	1.98E-03
55	GO:0009733: response to auxin	2.26E-03
56	GO:0010075: regulation of meristem growth	2.29E-03
57	GO:0009767: photosynthetic electron transport chain	2.29E-03
58	GO:0010411: xyloglucan metabolic process	2.49E-03
59	GO:0009934: regulation of meristem structural organization	2.58E-03
60	GO:0015696: ammonium transport	2.87E-03
61	GO:0046739: transport of virus in multicellular host	2.87E-03
62	GO:2000904: regulation of starch metabolic process	2.87E-03
63	GO:0051289: protein homotetramerization	2.87E-03
64	GO:0031048: chromatin silencing by small RNA	2.87E-03
65	GO:0043572: plastid fission	2.87E-03
66	GO:1902476: chloride transmembrane transport	2.87E-03
67	GO:0051513: regulation of monopolar cell growth	2.87E-03
68	GO:0007231: osmosensory signaling pathway	2.87E-03
69	GO:0030071: regulation of mitotic metaphase/anaphase transition	2.87E-03
70	GO:0051639: actin filament network formation	2.87E-03
71	GO:0009800: cinnamic acid biosynthetic process	2.87E-03
72	GO:0044211: CTP salvage	2.87E-03
73	GO:0048645: animal organ formation	2.87E-03
74	GO:0019048: modulation by virus of host morphology or physiology	2.87E-03
75	GO:0090351: seedling development	2.90E-03
76	GO:0070588: calcium ion transmembrane transport	2.90E-03
77	GO:0005992: trehalose biosynthetic process	3.59E-03
78	GO:0006552: leucine catabolic process	3.87E-03
79	GO:0044205: 'de novo' UMP biosynthetic process	3.87E-03
80	GO:0051567: histone H3-K9 methylation	3.87E-03
81	GO:0044206: UMP salvage	3.87E-03
82	GO:0009165: nucleotide biosynthetic process	3.87E-03
83	GO:1901141: regulation of lignin biosynthetic process	3.87E-03
84	GO:0051764: actin crosslink formation	3.87E-03
85	GO:0051322: anaphase	3.87E-03
86	GO:0071249: cellular response to nitrate	3.87E-03
87	GO:0030104: water homeostasis	3.87E-03
88	GO:0072488: ammonium transmembrane transport	3.87E-03
89	GO:0033500: carbohydrate homeostasis	3.87E-03
90	GO:0046656: folic acid biosynthetic process	3.87E-03
91	GO:0016998: cell wall macromolecule catabolic process	4.36E-03
92	GO:0006306: DNA methylation	4.36E-03
93	GO:0006544: glycine metabolic process	4.97E-03
94	GO:0071368: cellular response to cytokinin stimulus	4.97E-03
95	GO:1902183: regulation of shoot apical meristem development	4.97E-03
96	GO:0016123: xanthophyll biosynthetic process	4.97E-03
97	GO:0010158: abaxial cell fate specification	4.97E-03
98	GO:0048578: positive regulation of long-day photoperiodism, flowering	4.97E-03
99	GO:0030308: negative regulation of cell growth	4.97E-03
100	GO:0010375: stomatal complex patterning	4.97E-03
101	GO:0010082: regulation of root meristem growth	5.22E-03
102	GO:0009734: auxin-activated signaling pathway	5.28E-03
103	GO:0042546: cell wall biogenesis	5.60E-03
104	GO:0030154: cell differentiation	5.68E-03
105	GO:0006559: L-phenylalanine catabolic process	6.16E-03
106	GO:0006206: pyrimidine nucleobase metabolic process	6.16E-03
107	GO:0016458: gene silencing	6.16E-03
108	GO:0018258: protein O-linked glycosylation via hydroxyproline	6.16E-03
109	GO:0009228: thiamine biosynthetic process	6.16E-03
110	GO:0006563: L-serine metabolic process	6.16E-03
111	GO:0010405: arabinogalactan protein metabolic process	6.16E-03
112	GO:0009959: negative gravitropism	6.16E-03
113	GO:0006655: phosphatidylglycerol biosynthetic process	6.16E-03
114	GO:0006139: nucleobase-containing compound metabolic process	6.16E-03
115	GO:0042793: transcription from plastid promoter	6.16E-03
116	GO:0048831: regulation of shoot system development	6.16E-03
117	GO:0010087: phloem or xylem histogenesis	6.66E-03
118	GO:0048653: anther development	6.66E-03
119	GO:0006342: chromatin silencing	7.19E-03
120	GO:0048509: regulation of meristem development	7.44E-03
121	GO:0046654: tetrahydrofolate biosynthetic process	7.44E-03
122	GO:0030488: tRNA methylation	7.44E-03
123	GO:0080113: regulation of seed growth	7.44E-03
124	GO:2000037: regulation of stomatal complex patterning	7.44E-03
125	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	7.44E-03
126	GO:2000067: regulation of root morphogenesis	7.44E-03
127	GO:0080036: regulation of cytokinin-activated signaling pathway	7.44E-03
128	GO:0007166: cell surface receptor signaling pathway	7.49E-03
129	GO:0009646: response to absence of light	7.73E-03
130	GO:0010444: guard mother cell differentiation	8.81E-03
131	GO:0022904: respiratory electron transport chain	8.81E-03
132	GO:0009396: folic acid-containing compound biosynthetic process	8.81E-03
133	GO:0010161: red light signaling pathway	8.81E-03
134	GO:0009610: response to symbiotic fungus	8.81E-03
135	GO:0006955: immune response	8.81E-03
136	GO:0048528: post-embryonic root development	8.81E-03
137	GO:0006821: chloride transport	8.81E-03
138	GO:0010050: vegetative phase change	8.81E-03
139	GO:0032502: developmental process	9.51E-03
140	GO:0048367: shoot system development	1.01E-02
141	GO:0009787: regulation of abscisic acid-activated signaling pathway	1.03E-02
142	GO:0009850: auxin metabolic process	1.03E-02
143	GO:0032875: regulation of DNA endoreduplication	1.03E-02
144	GO:0055075: potassium ion homeostasis	1.03E-02
145	GO:0006402: mRNA catabolic process	1.03E-02
146	GO:0009740: gibberellic acid mediated signaling pathway	1.13E-02
147	GO:0010100: negative regulation of photomorphogenesis	1.18E-02
148	GO:0006526: arginine biosynthetic process	1.18E-02
149	GO:0010497: plasmodesmata-mediated intercellular transport	1.18E-02
150	GO:0032544: plastid translation	1.18E-02
151	GO:0010099: regulation of photomorphogenesis	1.18E-02
152	GO:0009827: plant-type cell wall modification	1.18E-02
153	GO:0051607: defense response to virus	1.22E-02
154	GO:0009742: brassinosteroid mediated signaling pathway	1.32E-02
155	GO:0006783: heme biosynthetic process	1.34E-02
156	GO:0000902: cell morphogenesis	1.34E-02
157	GO:0009051: pentose-phosphate shunt, oxidative branch	1.34E-02
158	GO:2000024: regulation of leaf development	1.34E-02
159	GO:0010029: regulation of seed germination	1.37E-02
160	GO:0010380: regulation of chlorophyll biosynthetic process	1.51E-02
161	GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway	1.51E-02
162	GO:0031425: chloroplast RNA processing	1.51E-02
163	GO:0042761: very long-chain fatty acid biosynthetic process	1.51E-02
164	GO:0035999: tetrahydrofolate interconversion	1.51E-02
165	GO:2000280: regulation of root development	1.51E-02
166	GO:0016310: phosphorylation	1.62E-02
167	GO:0080167: response to karrikin	1.64E-02
168	GO:0006535: cysteine biosynthetic process from serine	1.69E-02
169	GO:0030422: production of siRNA involved in RNA interference	1.69E-02
170	GO:0048829: root cap development	1.69E-02
171	GO:0009641: shade avoidance	1.69E-02
172	GO:0006949: syncytium formation	1.69E-02
173	GO:0009299: mRNA transcription	1.69E-02
174	GO:0009773: photosynthetic electron transport in photosystem I	1.87E-02
175	GO:0010015: root morphogenesis	1.87E-02
176	GO:0006816: calcium ion transport	1.87E-02
177	GO:0009089: lysine biosynthetic process via diaminopimelate	1.87E-02
178	GO:0006865: amino acid transport	2.05E-02
179	GO:0016024: CDP-diacylglycerol biosynthetic process	2.06E-02
180	GO:0045037: protein import into chloroplast stroma	2.06E-02
181	GO:0010582: floral meristem determinacy	2.06E-02
182	GO:0008361: regulation of cell size	2.06E-02
183	GO:0015706: nitrate transport	2.06E-02
184	GO:0010628: positive regulation of gene expression	2.25E-02
185	GO:0009785: blue light signaling pathway	2.25E-02
186	GO:0006006: glucose metabolic process	2.25E-02
187	GO:0050826: response to freezing	2.25E-02
188	GO:0009725: response to hormone	2.25E-02
189	GO:0006839: mitochondrial transport	2.45E-02
190	GO:0006541: glutamine metabolic process	2.46E-02
191	GO:0010020: chloroplast fission	2.46E-02
192	GO:0010207: photosystem II assembly	2.46E-02
193	GO:0006897: endocytosis	2.56E-02
194	GO:0010167: response to nitrate	2.67E-02
195	GO:0009926: auxin polar transport	2.77E-02
196	GO:0009739: response to gibberellin	2.82E-02
197	GO:0006071: glycerol metabolic process	2.88E-02
198	GO:0006833: water transport	2.88E-02
199	GO:0008643: carbohydrate transport	3.00E-02
200	GO:0051017: actin filament bundle assembly	3.10E-02
201	GO:0010187: negative regulation of seed germination	3.10E-02
202	GO:0019344: cysteine biosynthetic process	3.10E-02
203	GO:0009944: polarity specification of adaxial/abaxial axis	3.10E-02
204	GO:0006855: drug transmembrane transport	3.24E-02
205	GO:0006825: copper ion transport	3.33E-02
206	GO:0051302: regulation of cell division	3.33E-02
207	GO:0006418: tRNA aminoacylation for protein translation	3.33E-02
208	GO:0006730: one-carbon metabolic process	3.80E-02
209	GO:0031348: negative regulation of defense response	3.80E-02
210	GO:0051603: proteolysis involved in cellular protein catabolic process	3.86E-02
211	GO:0009826: unidimensional cell growth	4.03E-02
212	GO:0071215: cellular response to abscisic acid stimulus	4.04E-02
213	GO:0009686: gibberellin biosynthetic process	4.04E-02
214	GO:0009658: chloroplast organization	4.22E-02
215	GO:0006284: base-excision repair	4.29E-02
216	GO:0070417: cellular response to cold	4.54E-02
217	GO:0048316: seed development	4.55E-02
218	GO:0080022: primary root development	4.79E-02
219	GO:0042335: cuticle development	4.79E-02
220	GO:0042631: cellular response to water deprivation	4.79E-02
221	GO:0000226: microtubule cytoskeleton organization	4.79E-02

Rank	GO Term	Adjusted P value
1	GO:0048039: ubiquinone binding	0.00E+00
2	GO:0004056: argininosuccinate lyase activity	0.00E+00
3	GO:0033818: beta-ketoacyl-acyl-carrier-protein synthase III activity	0.00E+00
4	GO:0043783: oxidoreductase activity, oxidizing metal ions with flavin as acceptor	0.00E+00
5	GO:0070009: serine-type aminopeptidase activity	0.00E+00
6	GO:0019136: deoxynucleoside kinase activity	0.00E+00
7	GO:0004174: electron-transferring-flavoprotein dehydrogenase activity	0.00E+00
8	GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity	0.00E+00
9	GO:0003873: 6-phosphofructo-2-kinase activity	0.00E+00
10	GO:0004674: protein serine/threonine kinase activity	5.07E-06
11	GO:0016301: kinase activity	2.07E-04
12	GO:0016773: phosphotransferase activity, alcohol group as acceptor	2.54E-04
13	GO:0004156: dihydropteroate synthase activity	5.60E-04
14	GO:0003848: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity	5.60E-04
15	GO:0005290: L-histidine transmembrane transporter activity	5.60E-04
16	GO:0052906: tRNA (guanine(37)-N(1))-methyltransferase activity	5.60E-04
17	GO:0004008: copper-exporting ATPase activity	5.60E-04
18	GO:0004071: aspartate-ammonia ligase activity	5.60E-04
19	GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity	5.60E-04
20	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	5.60E-04
21	GO:0004830: tryptophan-tRNA ligase activity	5.60E-04
22	GO:0010285: L,L-diaminopimelate aminotransferase activity	5.60E-04
23	GO:0010313: phytochrome binding	5.60E-04
24	GO:0050139: nicotinate-N-glucosyltransferase activity	5.60E-04
25	GO:0042834: peptidoglycan binding	5.60E-04
26	GO:0004088: carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity	5.60E-04
27	GO:0004672: protein kinase activity	6.47E-04
28	GO:0005524: ATP binding	8.69E-04
29	GO:0000064: L-ornithine transmembrane transporter activity	1.20E-03
30	GO:0015929: hexosaminidase activity	1.20E-03
31	GO:0004563: beta-N-acetylhexosaminidase activity	1.20E-03
32	GO:0009884: cytokinin receptor activity	1.20E-03
33	GO:0050017: L-3-cyanoalanine synthase activity	1.20E-03
34	GO:0004066: asparagine synthase (glutamine-hydrolyzing) activity	1.20E-03
35	GO:0043425: bHLH transcription factor binding	1.20E-03
36	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	1.20E-03
37	GO:0016762: xyloglucan:xyloglucosyl transferase activity	1.26E-03
38	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	1.28E-03
39	GO:0000156: phosphorelay response regulator activity	1.48E-03
40	GO:0004805: trehalose-phosphatase activity	1.52E-03
41	GO:0045548: phenylalanine ammonia-lyase activity	1.98E-03
42	GO:0005034: osmosensor activity	1.98E-03
43	GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity	1.98E-03
44	GO:0070180: large ribosomal subunit rRNA binding	1.98E-03
45	GO:0070330: aromatase activity	1.98E-03
46	GO:0017150: tRNA dihydrouridine synthase activity	1.98E-03
47	GO:0005262: calcium channel activity	2.29E-03
48	GO:0016798: hydrolase activity, acting on glycosyl bonds	2.49E-03
49	GO:0015181: arginine transmembrane transporter activity	2.87E-03
50	GO:0035197: siRNA binding	2.87E-03
51	GO:0001872: (1->3)-beta-D-glucan binding	2.87E-03
52	GO:0015189: L-lysine transmembrane transporter activity	2.87E-03
53	GO:0005253: anion channel activity	3.87E-03
54	GO:0019199: transmembrane receptor protein kinase activity	3.87E-03
55	GO:0046556: alpha-L-arabinofuranosidase activity	3.87E-03
56	GO:0004845: uracil phosphoribosyltransferase activity	3.87E-03
57	GO:0004345: glucose-6-phosphate dehydrogenase activity	3.87E-03
58	GO:0033612: receptor serine/threonine kinase binding	4.36E-03
59	GO:0005275: amine transmembrane transporter activity	4.97E-03
60	GO:0018685: alkane 1-monooxygenase activity	4.97E-03
61	GO:0008725: DNA-3-methyladenine glycosylase activity	4.97E-03
62	GO:0004372: glycine hydroxymethyltransferase activity	4.97E-03
63	GO:0043621: protein self-association	5.89E-03
64	GO:0008519: ammonium transmembrane transporter activity	6.16E-03
65	GO:0005247: voltage-gated chloride channel activity	6.16E-03
66	GO:2001070: starch binding	6.16E-03
67	GO:0004605: phosphatidate cytidylyltransferase activity	6.16E-03
68	GO:1990714: hydroxyproline O-galactosyltransferase activity	6.16E-03
69	GO:0004656: procollagen-proline 4-dioxygenase activity	7.44E-03
70	GO:0019900: kinase binding	7.44E-03
71	GO:0004124: cysteine synthase activity	7.44E-03
72	GO:0008195: phosphatidate phosphatase activity	7.44E-03
73	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	7.44E-03
74	GO:0004849: uridine kinase activity	7.44E-03
75	GO:0003872: 6-phosphofructokinase activity	8.81E-03
76	GO:0008173: RNA methyltransferase activity	1.18E-02
77	GO:0005375: copper ion transmembrane transporter activity	1.18E-02
78	GO:0008353: RNA polymerase II carboxy-terminal domain kinase activity	1.18E-02
79	GO:0008889: glycerophosphodiester phosphodiesterase activity	1.34E-02
80	GO:0004713: protein tyrosine kinase activity	1.69E-02
81	GO:0004673: protein histidine kinase activity	1.69E-02
82	GO:0015238: drug transmembrane transporter activity	1.78E-02
83	GO:0030170: pyridoxal phosphate binding	1.86E-02
84	GO:0005089: Rho guanyl-nucleotide exchange factor activity	1.87E-02
85	GO:0004521: endoribonuclease activity	2.06E-02
86	GO:0004022: alcohol dehydrogenase (NAD) activity	2.25E-02
87	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	2.25E-02
88	GO:0004089: carbonate dehydratase activity	2.25E-02
89	GO:0031072: heat shock protein binding	2.25E-02
90	GO:0000155: phosphorelay sensor kinase activity	2.25E-02
91	GO:0009982: pseudouridine synthase activity	2.25E-02
92	GO:0042803: protein homodimerization activity	2.31E-02
93	GO:0004871: signal transducer activity	2.31E-02
94	GO:0008017: microtubule binding	2.60E-02
95	GO:0004185: serine-type carboxypeptidase activity	2.77E-02
96	GO:0031418: L-ascorbic acid binding	3.10E-02
97	GO:0009055: electron carrier activity	3.25E-02
98	GO:0042802: identical protein binding	3.31E-02
99	GO:0043424: protein histidine kinase binding	3.33E-02
100	GO:0005345: purine nucleobase transmembrane transporter activity	3.33E-02
101	GO:0004176: ATP-dependent peptidase activity	3.56E-02
102	GO:0003964: RNA-directed DNA polymerase activity	3.56E-02
103	GO:0008408: 3'-5' exonuclease activity	3.56E-02
104	GO:0035251: UDP-glucosyltransferase activity	3.56E-02
105	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	3.87E-02
106	GO:0030246: carbohydrate binding	3.99E-02
107	GO:0022891: substrate-specific transmembrane transporter activity	4.04E-02
108	GO:0015171: amino acid transmembrane transporter activity	4.13E-02
109	GO:0003777: microtubule motor activity	4.13E-02
110	GO:0003727: single-stranded RNA binding	4.29E-02
111	GO:0008514: organic anion transmembrane transporter activity	4.29E-02
112	GO:0004812: aminoacyl-tRNA ligase activity	4.54E-02