gene detail

Gene description

TAIR ID: AT5G62190

Short description: DEAD box RNA helicase (PRH75)

Pathogen responsiveness: -2.04

General responsiveness: -1.11

Orthologous

Rice:

Maize:

Wheat:

GO biological process

RNA secondary structure unwinding, RNA metabolic process

GO cellular component

nucleus, nucleolus, cytoplasm

GO molecular function

ATP binding, ATP-dependent helicase activity, ATP-dependent RNA helicase activity, RNA binding

Protein domain

Pfam	PF00271, Helicase conserved C-terminal domain
Pfam	PF08152, GUCT (NUC152) domain
Pfam	PF00270, DEAD/DEAH box helicase
SMART	SM00490, HELICc
SMART	SM00487, DEXDc

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation

Regulator:
AT1G13450

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 6

Coexpression network

Differentially expressed condition

3 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE17464	Penta, control	Penta, PstDC3000 12 h	1.64	1.76E-08
GSE18978	Col, WT, control 24 h	Col, WT, PsmES4326 24 h	-1.85	3.28E-07
GSE37269	Ei2, WT, control	Ei2, WT, TEV 21 d	-1.91	8.28E-03