Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G62190

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006005: L-fucose biosynthetic process0.00E+00
2GO:0009560: embryo sac egg cell differentiation0.00E+00
3GO:1900363: regulation of mRNA polyadenylation0.00E+00
4GO:0019481: L-alanine catabolic process, by transamination0.00E+00
5GO:0099636: cytoplasmic streaming2.19E-05
6GO:0034628: 'de novo' NAD biosynthetic process from aspartate2.19E-05
7GO:0042350: GDP-L-fucose biosynthetic process2.19E-05
8GO:0051014: actin filament severing2.19E-05
9GO:0006396: RNA processing3.42E-05
10GO:0046686: response to cadmium ion5.19E-05
11GO:0010155: regulation of proton transport5.64E-05
12GO:0006611: protein export from nucleus5.64E-05
13GO:0010289: homogalacturonan biosynthetic process5.64E-05
14GO:0031124: mRNA 3'-end processing5.64E-05
15GO:0019521: D-gluconate metabolic process5.64E-05
16GO:0010372: positive regulation of gibberellin biosynthetic process5.64E-05
17GO:0042351: 'de novo' GDP-L-fucose biosynthetic process9.94E-05
18GO:0051176: positive regulation of sulfur metabolic process9.94E-05
19GO:0000055: ribosomal large subunit export from nucleus9.94E-05
20GO:0070475: rRNA base methylation9.94E-05
21GO:0009615: response to virus1.59E-04
22GO:0001709: cell fate determination2.04E-04
23GO:0033320: UDP-D-xylose biosynthetic process2.04E-04
24GO:0051764: actin crosslink formation2.04E-04
25GO:0016973: poly(A)+ mRNA export from nucleus2.62E-04
26GO:0007029: endoplasmic reticulum organization2.62E-04
27GO:0009435: NAD biosynthetic process2.62E-04
28GO:0034052: positive regulation of plant-type hypersensitive response2.62E-04
29GO:0000470: maturation of LSU-rRNA3.24E-04
30GO:0042732: D-xylose metabolic process3.24E-04
31GO:0051693: actin filament capping4.56E-04
32GO:0006402: mRNA catabolic process5.25E-04
33GO:0043068: positive regulation of programmed cell death5.25E-04
34GO:0006997: nucleus organization5.98E-04
35GO:2000031: regulation of salicylic acid mediated signaling pathway5.98E-04
36GO:0000184: nuclear-transcribed mRNA catabolic process, nonsense-mediated decay6.71E-04
37GO:0009060: aerobic respiration6.71E-04
38GO:0009051: pentose-phosphate shunt, oxidative branch6.71E-04
39GO:0006349: regulation of gene expression by genetic imprinting7.48E-04
40GO:0000387: spliceosomal snRNP assembly7.48E-04
41GO:0090332: stomatal closure7.48E-04
42GO:0030042: actin filament depolymerization7.48E-04
43GO:0009750: response to fructose9.07E-04
44GO:0006378: mRNA polyadenylation9.07E-04
45GO:0010015: root morphogenesis9.07E-04
46GO:0006457: protein folding9.25E-04
47GO:0007015: actin filament organization1.16E-03
48GO:0034605: cellular response to heat1.16E-03
49GO:0009225: nucleotide-sugar metabolic process1.25E-03
50GO:0051017: actin filament bundle assembly1.43E-03
51GO:0007010: cytoskeleton organization1.43E-03
52GO:0010187: negative regulation of seed germination1.43E-03
53GO:0098542: defense response to other organism1.63E-03
54GO:0016226: iron-sulfur cluster assembly1.73E-03
55GO:0009686: gibberellin biosynthetic process1.83E-03
56GO:0009306: protein secretion1.94E-03
57GO:0009960: endosperm development2.26E-03
58GO:0009749: response to glucose2.49E-03
59GO:0031047: gene silencing by RNA2.73E-03
60GO:0009408: response to heat3.03E-03
61GO:0007267: cell-cell signaling3.09E-03
62GO:0001666: response to hypoxia3.34E-03
63GO:0048767: root hair elongation4.14E-03
64GO:0009834: plant-type secondary cell wall biogenesis4.28E-03
65GO:0016051: carbohydrate biosynthetic process4.70E-03
66GO:0008283: cell proliferation5.60E-03
67GO:0009744: response to sucrose5.60E-03
68GO:0009965: leaf morphogenesis6.07E-03
69GO:0006364: rRNA processing6.88E-03
70GO:0006417: regulation of translation7.38E-03
71GO:0009626: plant-type hypersensitive response8.08E-03
72GO:0009553: embryo sac development8.61E-03
73GO:0000398: mRNA splicing, via spliceosome9.72E-03
74GO:0042742: defense response to bacterium1.08E-02
75GO:0009845: seed germination1.09E-02
76GO:0006413: translational initiation1.23E-02
77GO:0009451: RNA modification1.31E-02
78GO:0009409: response to cold1.47E-02
79GO:0080167: response to karrikin2.05E-02
80GO:0006397: mRNA processing2.79E-02
RankGO TermAdjusted P value
1GO:0030621: U4 snRNA binding0.00E+00
2GO:0008987: quinolinate synthetase A activity0.00E+00
3GO:0002020: protease binding1.17E-06
4GO:0017070: U6 snRNA binding1.17E-06
5GO:0009383: rRNA (cytosine-C5-)-methyltransferase activity2.19E-05
6GO:0050577: GDP-L-fucose synthase activity2.19E-05
7GO:0008114: phosphogluconate 2-dehydrogenase activity2.19E-05
8GO:0003729: mRNA binding4.70E-05
9GO:0036002: pre-mRNA binding5.64E-05
10GO:0043023: ribosomal large subunit binding1.49E-04
11GO:0004021: L-alanine:2-oxoglutarate aminotransferase activity1.49E-04
12GO:0003723: RNA binding2.35E-04
13GO:0048040: UDP-glucuronate decarboxylase activity3.24E-04
14GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity3.89E-04
15GO:0070403: NAD+ binding3.89E-04
16GO:0008173: RNA methyltransferase activity5.98E-04
17GO:0008047: enzyme activator activity8.27E-04
18GO:0004521: endoribonuclease activity9.89E-04
19GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity1.73E-03
20GO:0003676: nucleic acid binding1.94E-03
21GO:0050662: coenzyme binding2.38E-03
22GO:0016853: isomerase activity2.38E-03
23GO:0004518: nuclease activity2.73E-03
24GO:0051015: actin filament binding2.85E-03
25GO:0004519: endonuclease activity3.29E-03
26GO:0004004: ATP-dependent RNA helicase activity3.73E-03
27GO:0051539: 4 iron, 4 sulfur cluster binding5.15E-03
28GO:0000166: nucleotide binding5.34E-03
29GO:0003779: actin binding8.61E-03
30GO:0004386: helicase activity9.34E-03
31GO:0005509: calcium ion binding9.96E-03
32GO:0003743: translation initiation factor activity1.44E-02
33GO:0005515: protein binding1.69E-02
34GO:0042803: protein homodimerization activity2.41E-02
35GO:0016740: transferase activity4.69E-02
RankGO TermAdjusted P value
1GO:0016442: RISC complex2.19E-05
2GO:0030688: preribosome, small subunit precursor2.19E-05
3GO:0071007: U2-type catalytic step 2 spliceosome5.64E-05
4GO:0005829: cytosol9.62E-05
5GO:0071006: U2-type catalytic step 1 spliceosome1.49E-04
6GO:0005847: mRNA cleavage and polyadenylation specificity factor complex2.62E-04
7GO:0000974: Prp19 complex3.24E-04
8GO:0016363: nuclear matrix3.89E-04
9GO:0005635: nuclear envelope4.99E-04
10GO:0034399: nuclear periphery5.25E-04
11GO:0046540: U4/U6 x U5 tri-snRNP complex5.98E-04
12GO:0010494: cytoplasmic stress granule6.71E-04
13GO:0009506: plasmodesma7.00E-04
14GO:0048471: perinuclear region of cytoplasm9.07E-04
15GO:0005884: actin filament9.07E-04
16GO:0032580: Golgi cisterna membrane2.97E-03
17GO:0000932: P-body3.34E-03
18GO:0005643: nuclear pore4.00E-03
19GO:0022626: cytosolic ribosome5.11E-03
20GO:0005856: cytoskeleton6.07E-03
21GO:0005737: cytoplasm7.38E-03
22GO:0005774: vacuolar membrane7.73E-03
23GO:0005681: spliceosomal complex7.73E-03
24GO:0016607: nuclear speck7.90E-03
25GO:0005802: trans-Golgi network8.54E-03
26GO:0005622: intracellular9.47E-03
27GO:0005768: endosome9.72E-03
28GO:0005623: cell1.05E-02
29GO:0005634: nucleus1.64E-02
30GO:0005794: Golgi apparatus1.80E-02
31GO:0005730: nucleolus1.83E-02
32GO:0080008: Cul4-RING E3 ubiquitin ligase complex1.88E-02
33GO:0048046: apoplast3.94E-02
34GO:0005618: cell wall4.29E-02
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Gene type



Gene DE type