gene detail

Gene description

TAIR ID: AT5G61270

Short description: phytochrome-interacting factor7

Pathogen responsiveness: NA

General responsiveness: NA

Orthologous

Rice: No orthologous gene

Maize: No orthologous gene

Wheat: No orthologous gene

GO biological process

regulation of transcription, DNA-templated, transcription, response to light stimulus, red, far-red light phototransduction, de-etiolation

GO cellular component

nucleus, nuclear speck

GO molecular function

transcription factor activity, sequence-specific DNA binding, protein dimerization activity, protein binding

Protein domain

Pfam	PF00010, Helix-loop-helix DNA-binding domain
SMART	SM00353, HLH

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation

Regulator:
AT5G13790, AT1G24260, AT5G61850, AT2G43010

Protein-protein interaction network

The number of partners (degree) is: 8

Coexpression network

Differentially expressed condition

7 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE37269	Ei2, WT, control	Ei2, WT, TEV 21 d	-2.32	2.09E-03
GSE37269	St0, WT, control	St0, WT, TEV 21 d	-1.75	1.19E-02
GSE37269	Wt1, WT, control	Wt1, WT, TEV 21 d	-1.85	3.21E-02
GSE40544	Col, WT, control	Col, WT, PstDC3000 EV	-2.20	2.84E-03
GSE40544	Col, Sid2, control	Col, Sid2, PstDC3000 AvrRpt2	-1.61	2.44E-02
GSE40544	Col, Sid2, control	Col, Sid2, PstDC3000 EV	-2.07	9.78E-03
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 12 h	-1.65	1.68E-11