gene detail

Gene description

TAIR ID: AT5G59430

Short description: telomeric repeat binding protein 1

Pathogen responsiveness: -0.88

General responsiveness: -1.96

Orthologous

Rice: No orthologous gene

Maize: No orthologous gene

Wheat: No orthologous gene

GO biological process

ethylene-activated signaling pathway, regulation of transcription, DNA-templated, transcription, response to salt stress, telomeric loop formation, response to ethylene, response to gibberellin, response to jasmonic acid, response to auxin, response to cadmium ion, response to salicylic acid

GO cellular component

nuclear membrane, nucleus, plasma membrane, membrane, nuclear telomere cap complex, cytoplasm

GO molecular function

protein binding

Protein domain

SMART

SM00717, SANT

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation

Regulator:
AT1G24260, AT5G61850, AT2G43010

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 2

click to view PPI network

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE26679_WT_GC  view
GSE45212_MED14_PSTDC3000_AVRRPT2  view

Differentially expressed condition

8 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE17464	Laer, control	Laer, Flg22 1 h	1.97	5.84E-06
GSE18978	Col, WT, control 24 h	Col, WT, PsmES4326 24 h	-2.49	8.10E-09
GSE26679	Col, WT, GC 0 h	Col, WT, GC 36 h	-2.00	9.26E-11
GSE26679	Col, WT, GC 0 h	Col, WT, GC 96 h	-1.80	5.22E-09
GSE26679	Col, edr1, GC 0 h	Col, edr1, GC 36 h	-1.60	3.06E-09
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 8 h	-1.84	1.61E-12
GSE45214	Col, med16, PstDC3000 AvrRpt2 0 h	Col, med16, PstDC3000 AvrRpt2 4 h	-1.95	2.49E-12
GSE50526	Col, WT, mock 24 h	Col, WT, A. brassicicola 24 h	-1.59	5.25E-03