Gene: AT5G56860
     

Gene description


TAIR ID: AT5G56860

Short description: GATA type zinc finger transcription factor family protein

Pathogen responsiveness: 0.40

General responsiveness: 1.17

Orthologous


Rice: No orthologous gene
Maize: No orthologous gene
Wheat: No orthologous gene

GO biological process


negative regulation of seed germination, response to light stimulus, cell differentiation, glucose mediated signaling pathway, negative regulation of flower development, regulation of gene expression, regulation of nitrogen compound metabolic process, gibberellic acid mediated signaling pathway, circadian rhythm, regulation of chlorophyll biosynthetic process


GO cellular component


transcription factor complex, nucleus


GO molecular function


RNA polymerase II regulatory region sequence-specific DNA binding, regulation of transcription, DNA-templated, transcription factor activity, sequence-specific DNA binding, transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding, RNA polymerase II transcription factor binding, zinc ion binding, protein binding, chromatin binding


Protein domain


PfamPF00320, GATA zinc finger
SMARTSM00401, ZnF_GATA

Metabolic pathway


Not involved in metabolic pathway


KEGG pathway


Not involved in KEGG pathway


Transcriptional regulation


Regulator:
AT3G54340, AT5G20240

Target:
AT2G15890, AT5G26340, AT4G30270, AT1G57990, AT4G35770, AT2G29350, AT4G29130

Protein-protein interaction network


The number of partners (degree) is: 1

click to view PPI network

Differentially expressed condition


29 conditions



SeriesControlTreatmentLog2FCAdj. P value
GSE12856Col, ataf1, controlCol, ataf1, Bg h-1.706.74E-08
GSE17464Laer, JA+Flg22 0 hLaer, JA+Flg22 2 h-1.694.96E-02
GSE17464Laer, controlLaer, Flg22 1 h-2.118.65E-03
GSE17464Laer, controlLaer, Flg22 2 h-1.851.86E-02
GSE17464Penta, controlPenta, Alternaria brassicicola 3 d-1.803.10E-02
GSE17464Penta, controlPenta, Flg22 2 h-3.294.58E-05
GSE17464Penta, controlPenta, Flg22 2 h-2.658.12E-04
GSE18978Col, WT, control 24 hCol, WT, PsmES4326 24 h-2.858.92E-07
GSE26679Col, WT, GC 0 hCol, WT, GC 18 h1.701.68E-08
GSE26679Col, edr1, GC 0 hCol, edr1, GC 18 h1.594.73E-08
GSE37269Ei2, WT, controlEi2, WT, TEV 21 d-1.603.68E-02
GSE37269St0, WT, controlSt0, WT, TEV 21 d-2.792.19E-04
GSE40544Col, WT, controlCol, WT, PstDC3000 EV-1.849.11E-03
GSE40544Col, Sid2, controlCol, Sid2, PstDC3000 AvrRpt2-1.592.24E-02
GSE40544Col, Sid2, controlCol, Sid2, PstDC3000 EV-1.544.68E-02
GSE45212Col, WT, PstDC3000 AvrRpt2 0 hCol, WT, PstDC3000 AvrRpt2 12 h-2.013.73E-13
GSE45212Col, WT, PstDC3000 AvrRpt2 0 hCol, WT, PstDC3000 AvrRpt2 8 h-1.812.46E-12
GSE45212Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 4 h-1.734.24E-12
GSE45212Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 8 h-1.994.10E-13
GSE45214Col, med16, PstDC3000 AvrRpt2 0 hCol, med16, PstDC3000 AvrRpt2 4 h-1.931.36E-11
GSE50526Col, WT, mock 9 hCol, WT, A. brassicicola 9 h-2.563.58E-04
GSE52979Col, WT, acetoneCol, WT, acetone flg22_2 h-2.791.26E-07
GSE52979Col, WT, oxo_C14_HSLCol, WT, oxo_C14_HSL flg22_2 h-3.083.07E-08
GSE5520Col, WT, control 10 hCol, WT, Cor- 10 h-2.342.08E-06
GSE5520Col, WT, control 7 hCol, WT, PstDC3000 7 h-2.531.67E-08
GSE58954Col, WT, Psm AvrRpt2 0 hCol, WT, Psm AvrRpt2 6 h-2.831.37E-03
GSE6176Col, WT, control 12 hCol, WT, PstDC3000 12 h-1.821.83E-09
GSE9674Ws-4, AtMYB30 ox, controlWs-4, AtMYB30 ox, Xanthomonas strain Xcc147 6 h-2.071.25E-02
GSE9674Ws-4, WT, controlWs-4, WT, Xanthomonas strain Xcc147 6 h-2.041.53E-02






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