co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G56860

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0043488: regulation of mRNA stability	0.00E+00
2	GO:0061157: mRNA destabilization	0.00E+00
3	GO:0090706: specification of plant organ position	0.00E+00
4	GO:0009157: deoxyribonucleoside monophosphate biosynthetic process	0.00E+00
5	GO:2000121: regulation of removal of superoxide radicals	0.00E+00
6	GO:0007037: vacuolar phosphate transport	0.00E+00
7	GO:0031054: pre-miRNA processing	0.00E+00
8	GO:0031116: positive regulation of microtubule polymerization	0.00E+00
9	GO:0010068: protoderm histogenesis	0.00E+00
10	GO:2001294: malonyl-CoA catabolic process	0.00E+00
11	GO:0009647: skotomorphogenesis	3.75E-05
12	GO:0010158: abaxial cell fate specification	1.05E-04
13	GO:1902183: regulation of shoot apical meristem development	1.05E-04
14	GO:0009648: photoperiodism	2.07E-04
15	GO:0010450: inflorescence meristem growth	3.24E-04
16	GO:0071028: nuclear mRNA surveillance	3.24E-04
17	GO:0006659: phosphatidylserine biosynthetic process	3.24E-04
18	GO:0043087: regulation of GTPase activity	3.24E-04
19	GO:0006264: mitochondrial DNA replication	3.24E-04
20	GO:0033259: plastid DNA replication	3.24E-04
21	GO:0009585: red, far-red light phototransduction	4.41E-04
22	GO:2000024: regulation of leaf development	5.01E-04
23	GO:0071051: polyadenylation-dependent snoRNA 3'-end processing	7.07E-04
24	GO:0006420: arginyl-tRNA aminoacylation	7.07E-04
25	GO:0034475: U4 snRNA 3'-end processing	7.07E-04
26	GO:1905011: transmembrane phosphate ion transport from cytosol to vacuole	7.07E-04
27	GO:1900871: chloroplast mRNA modification	7.07E-04
28	GO:0030187: melatonin biosynthetic process	7.07E-04
29	GO:0007154: cell communication	7.07E-04
30	GO:1900033: negative regulation of trichome patterning	7.07E-04
31	GO:0031648: protein destabilization	7.07E-04
32	GO:0031125: rRNA 3'-end processing	7.07E-04
33	GO:0015804: neutral amino acid transport	7.07E-04
34	GO:0009684: indoleacetic acid biosynthetic process	7.96E-04
35	GO:0048573: photoperiodism, flowering	8.87E-04
36	GO:0030036: actin cytoskeleton organization	1.03E-03
37	GO:0016075: rRNA catabolic process	1.15E-03
38	GO:0034427: nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'	1.15E-03
39	GO:0051127: positive regulation of actin nucleation	1.15E-03
40	GO:0070475: rRNA base methylation	1.15E-03
41	GO:0009405: pathogenesis	1.15E-03
42	GO:0010589: leaf proximal/distal pattern formation	1.15E-03
43	GO:0006753: nucleoside phosphate metabolic process	1.15E-03
44	GO:0080055: low-affinity nitrate transport	1.15E-03
45	GO:0051604: protein maturation	1.15E-03
46	GO:0001578: microtubule bundle formation	1.15E-03
47	GO:0045493: xylan catabolic process	1.15E-03
48	GO:0016050: vesicle organization	1.15E-03
49	GO:0045165: cell fate commitment	1.15E-03
50	GO:0090351: seedling development	1.29E-03
51	GO:0042753: positive regulation of circadian rhythm	1.44E-03
52	GO:0009944: polarity specification of adaxial/abaxial axis	1.59E-03
53	GO:0051639: actin filament network formation	1.65E-03
54	GO:0048645: animal organ formation	1.65E-03
55	GO:0006164: purine nucleotide biosynthetic process	1.65E-03
56	GO:0009963: positive regulation of flavonoid biosynthetic process	1.65E-03
57	GO:0046739: transport of virus in multicellular host	1.65E-03
58	GO:0006168: adenine salvage	1.65E-03
59	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.65E-03
60	GO:0009067: aspartate family amino acid biosynthetic process	1.65E-03
61	GO:0006166: purine ribonucleoside salvage	1.65E-03
62	GO:2000022: regulation of jasmonic acid mediated signaling pathway	2.11E-03
63	GO:0051764: actin crosslink formation	2.21E-03
64	GO:0051322: anaphase	2.21E-03
65	GO:0035279: mRNA cleavage involved in gene silencing by miRNA	2.21E-03
66	GO:0009649: entrainment of circadian clock	2.21E-03
67	GO:0007020: microtubule nucleation	2.21E-03
68	GO:0006021: inositol biosynthetic process	2.21E-03
69	GO:0009165: nucleotide biosynthetic process	2.21E-03
70	GO:0048629: trichome patterning	2.21E-03
71	GO:0034052: positive regulation of plant-type hypersensitive response	2.82E-03
72	GO:0046785: microtubule polymerization	2.82E-03
73	GO:0046283: anthocyanin-containing compound metabolic process	2.82E-03
74	GO:0045038: protein import into chloroplast thylakoid membrane	2.82E-03
75	GO:0044209: AMP salvage	2.82E-03
76	GO:0010154: fruit development	3.16E-03
77	GO:0009959: negative gravitropism	3.49E-03
78	GO:0045962: positive regulation of development, heterochronic	3.49E-03
79	GO:0006139: nucleobase-containing compound metabolic process	3.49E-03
80	GO:0009920: cell plate formation involved in plant-type cell wall biogenesis	3.49E-03
81	GO:0000741: karyogamy	3.49E-03
82	GO:0009117: nucleotide metabolic process	3.49E-03
83	GO:0006751: glutathione catabolic process	3.49E-03
84	GO:0010264: myo-inositol hexakisphosphate biosynthetic process	3.49E-03
85	GO:0008654: phospholipid biosynthetic process	3.64E-03
86	GO:0010583: response to cyclopentenone	4.16E-03
87	GO:0016032: viral process	4.16E-03
88	GO:0042372: phylloquinone biosynthetic process	4.20E-03
89	GO:0048280: vesicle fusion with Golgi apparatus	4.20E-03
90	GO:0010189: vitamin E biosynthetic process	4.20E-03
91	GO:0009088: threonine biosynthetic process	4.20E-03
92	GO:0048528: post-embryonic root development	4.95E-03
93	GO:0015937: coenzyme A biosynthetic process	4.95E-03
94	GO:0035196: production of miRNAs involved in gene silencing by miRNA	4.95E-03
95	GO:0010161: red light signaling pathway	4.95E-03
96	GO:0007155: cell adhesion	5.76E-03
97	GO:0043068: positive regulation of programmed cell death	5.76E-03
98	GO:0009690: cytokinin metabolic process	5.76E-03
99	GO:0010078: maintenance of root meristem identity	5.76E-03
100	GO:0010099: regulation of photomorphogenesis	6.60E-03
101	GO:0010100: negative regulation of photomorphogenesis	6.60E-03
102	GO:0043562: cellular response to nitrogen levels	6.60E-03
103	GO:0010093: specification of floral organ identity	6.60E-03
104	GO:0015995: chlorophyll biosynthetic process	6.63E-03
105	GO:0051865: protein autoubiquitination	7.48E-03
106	GO:0010206: photosystem II repair	7.48E-03
107	GO:0006783: heme biosynthetic process	7.48E-03
108	GO:0006189: 'de novo' IMP biosynthetic process	7.48E-03
109	GO:0009638: phototropism	8.41E-03
110	GO:0010267: production of ta-siRNAs involved in RNA interference	8.41E-03
111	GO:0010018: far-red light signaling pathway	8.41E-03
112	GO:1900865: chloroplast RNA modification	8.41E-03
113	GO:0048354: mucilage biosynthetic process involved in seed coat development	8.41E-03
114	GO:0071577: zinc II ion transmembrane transport	8.41E-03
115	GO:0009299: mRNA transcription	9.37E-03
116	GO:0006896: Golgi to vacuole transport	9.37E-03
117	GO:0006535: cysteine biosynthetic process from serine	9.37E-03
118	GO:0045036: protein targeting to chloroplast	9.37E-03
119	GO:0009641: shade avoidance	9.37E-03
120	GO:0010192: mucilage biosynthetic process	9.37E-03
121	GO:0009773: photosynthetic electron transport in photosystem I	1.04E-02
122	GO:0009089: lysine biosynthetic process via diaminopimelate	1.04E-02
123	GO:0006415: translational termination	1.04E-02
124	GO:1903507: negative regulation of nucleic acid-templated transcription	1.04E-02
125	GO:0009640: photomorphogenesis	1.21E-02
126	GO:0010588: cotyledon vascular tissue pattern formation	1.25E-02
127	GO:0010628: positive regulation of gene expression	1.25E-02
128	GO:0009725: response to hormone	1.25E-02
129	GO:0048467: gynoecium development	1.36E-02
130	GO:0006541: glutamine metabolic process	1.36E-02
131	GO:0009933: meristem structural organization	1.36E-02
132	GO:0006855: drug transmembrane transport	1.41E-02
133	GO:0009825: multidimensional cell growth	1.48E-02
134	GO:0019853: L-ascorbic acid biosynthetic process	1.48E-02
135	GO:0010030: positive regulation of seed germination	1.48E-02
136	GO:0000162: tryptophan biosynthetic process	1.60E-02
137	GO:0009833: plant-type primary cell wall biogenesis	1.60E-02
138	GO:0006833: water transport	1.60E-02
139	GO:0019344: cysteine biosynthetic process	1.72E-02
140	GO:0000027: ribosomal large subunit assembly	1.72E-02
141	GO:0007010: cytoskeleton organization	1.72E-02
142	GO:0010187: negative regulation of seed germination	1.72E-02
143	GO:0051017: actin filament bundle assembly	1.72E-02
144	GO:0005992: trehalose biosynthetic process	1.72E-02
145	GO:0009723: response to ethylene	1.80E-02
146	GO:0043622: cortical microtubule organization	1.84E-02
147	GO:0003333: amino acid transmembrane transport	1.97E-02
148	GO:0048511: rhythmic process	1.97E-02
149	GO:0048367: shoot system development	1.99E-02
150	GO:0009814: defense response, incompatible interaction	2.10E-02
151	GO:0035428: hexose transmembrane transport	2.10E-02
152	GO:0006730: one-carbon metabolic process	2.10E-02
153	GO:0046777: protein autophosphorylation	2.14E-02
154	GO:0009740: gibberellic acid mediated signaling pathway	2.19E-02
155	GO:0009686: gibberellin biosynthetic process	2.23E-02
156	GO:0006012: galactose metabolic process	2.23E-02
157	GO:0010214: seed coat development	2.37E-02
158	GO:0009742: brassinosteroid mediated signaling pathway	2.46E-02
159	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	2.51E-02
160	GO:0042147: retrograde transport, endosome to Golgi	2.51E-02
161	GO:0042631: cellular response to water deprivation	2.65E-02
162	GO:0042335: cuticle development	2.65E-02
163	GO:0000271: polysaccharide biosynthetic process	2.65E-02
164	GO:0080022: primary root development	2.65E-02
165	GO:0034220: ion transmembrane transport	2.65E-02
166	GO:0010087: phloem or xylem histogenesis	2.65E-02
167	GO:0007165: signal transduction	2.66E-02
168	GO:0009958: positive gravitropism	2.80E-02
169	GO:0045489: pectin biosynthetic process	2.80E-02
170	GO:0010305: leaf vascular tissue pattern formation	2.80E-02
171	GO:0010197: polar nucleus fusion	2.80E-02
172	GO:0046323: glucose import	2.80E-02
173	GO:0007018: microtubule-based movement	2.95E-02
174	GO:0006623: protein targeting to vacuole	3.10E-02
175	GO:0009791: post-embryonic development	3.10E-02
176	GO:0048825: cotyledon development	3.10E-02
177	GO:0009851: auxin biosynthetic process	3.10E-02
178	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	3.25E-02
179	GO:0006891: intra-Golgi vesicle-mediated transport	3.25E-02
180	GO:0032502: developmental process	3.41E-02
181	GO:0030163: protein catabolic process	3.57E-02
182	GO:1901657: glycosyl compound metabolic process	3.57E-02
183	GO:0009639: response to red or far red light	3.73E-02
184	GO:0006464: cellular protein modification process	3.73E-02
185	GO:0040008: regulation of growth	3.83E-02
186	GO:0071805: potassium ion transmembrane transport	3.89E-02
187	GO:0007623: circadian rhythm	4.01E-02
188	GO:0000910: cytokinesis	4.06E-02
189	GO:0010029: regulation of seed germination	4.40E-02
190	GO:0007166: cell surface receptor signaling pathway	4.57E-02
191	GO:0009627: systemic acquired resistance	4.57E-02
192	GO:0010411: xyloglucan metabolic process	4.75E-02
193	GO:0006888: ER to Golgi vesicle-mediated transport	4.75E-02

Rank	GO Term	Adjusted P value
1	GO:0019136: deoxynucleoside kinase activity	0.00E+00
2	GO:0004059: aralkylamine N-acetyltransferase activity	0.00E+00
3	GO:0010349: L-galactose dehydrogenase activity	0.00E+00
4	GO:0061634: alpha-D-xyloside xylohydrolase	0.00E+00
5	GO:0043864: indoleacetamide hydrolase activity	0.00E+00
6	GO:0004639: phosphoribosylaminoimidazolesuccinocarboxamide synthase activity	0.00E+00
7	GO:0010276: phytol kinase activity	0.00E+00
8	GO:0052907: 23S rRNA (adenine(1618)-N(6))-methyltransferase activity	0.00E+00
9	GO:0080176: xyloglucan 1,6-alpha-xylosidase activity	0.00E+00
10	GO:0008756: o-succinylbenzoate-CoA ligase activity	0.00E+00
11	GO:1990534: thermospermine oxidase activity	0.00E+00
12	GO:0010945: CoA pyrophosphatase activity	3.24E-04
13	GO:0010313: phytochrome binding	3.24E-04
14	GO:0050139: nicotinate-N-glucosyltransferase activity	3.24E-04
15	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	7.07E-04
16	GO:0080097: L-tryptophan:pyruvate aminotransferase activity	7.07E-04
17	GO:0016630: protochlorophyllide reductase activity	7.07E-04
18	GO:0004512: inositol-3-phosphate synthase activity	7.07E-04
19	GO:0015172: acidic amino acid transmembrane transporter activity	7.07E-04
20	GO:0050017: L-3-cyanoalanine synthase activity	7.07E-04
21	GO:0017118: lipoyltransferase activity	7.07E-04
22	GO:0003839: gamma-glutamylcyclotransferase activity	7.07E-04
23	GO:0043425: bHLH transcription factor binding	7.07E-04
24	GO:0004814: arginine-tRNA ligase activity	7.07E-04
25	GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity	7.07E-04
26	GO:0004148: dihydrolipoyl dehydrogenase activity	1.15E-03
27	GO:0004049: anthranilate synthase activity	1.15E-03
28	GO:0080054: low-affinity nitrate transmembrane transporter activity	1.15E-03
29	GO:0004072: aspartate kinase activity	1.65E-03
30	GO:0015175: neutral amino acid transmembrane transporter activity	1.65E-03
31	GO:0035529: NADH pyrophosphatase activity	1.65E-03
32	GO:0003999: adenine phosphoribosyltransferase activity	1.65E-03
33	GO:0008893: guanosine-3',5'-bis(diphosphate) 3'-diphosphatase activity	1.65E-03
34	GO:0035198: miRNA binding	1.65E-03
35	GO:0008017: microtubule binding	1.86E-03
36	GO:0043621: protein self-association	2.06E-03
37	GO:0035091: phosphatidylinositol binding	2.06E-03
38	GO:0080032: methyl jasmonate esterase activity	2.21E-03
39	GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	2.21E-03
40	GO:0009044: xylan 1,4-beta-xylosidase activity	2.21E-03
41	GO:0046556: alpha-L-arabinofuranosidase activity	2.21E-03
42	GO:0008409: 5'-3' exonuclease activity	2.21E-03
43	GO:0016846: carbon-sulfur lyase activity	2.82E-03
44	GO:0016773: phosphotransferase activity, alcohol group as acceptor	2.82E-03
45	GO:0004040: amidase activity	2.82E-03
46	GO:0000210: NAD+ diphosphatase activity	3.49E-03
47	GO:0016208: AMP binding	3.49E-03
48	GO:0042578: phosphoric ester hydrolase activity	3.49E-03
49	GO:0016462: pyrophosphatase activity	3.49E-03
50	GO:0004605: phosphatidate cytidylyltransferase activity	3.49E-03
51	GO:0003730: mRNA 3'-UTR binding	4.20E-03
52	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	4.20E-03
53	GO:0004124: cysteine synthase activity	4.20E-03
54	GO:0019899: enzyme binding	4.95E-03
55	GO:0004033: aldo-keto reductase (NADP) activity	5.76E-03
56	GO:0043022: ribosome binding	5.76E-03
57	GO:0030247: polysaccharide binding	6.63E-03
58	GO:0003747: translation release factor activity	7.48E-03
59	GO:0015238: drug transmembrane transporter activity	7.73E-03
60	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	7.85E-03
61	GO:0004805: trehalose-phosphatase activity	9.37E-03
62	GO:0008794: arsenate reductase (glutaredoxin) activity	1.04E-02
63	GO:0008327: methyl-CpG binding	1.04E-02
64	GO:0042802: identical protein binding	1.17E-02
65	GO:0000175: 3'-5'-exoribonuclease activity	1.25E-02
66	GO:0003725: double-stranded RNA binding	1.25E-02
67	GO:0004089: carbonate dehydratase activity	1.25E-02
68	GO:0031072: heat shock protein binding	1.25E-02
69	GO:0008131: primary amine oxidase activity	1.36E-02
70	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	1.36E-02
71	GO:0016788: hydrolase activity, acting on ester bonds	1.53E-02
72	GO:0003887: DNA-directed DNA polymerase activity	1.60E-02
73	GO:0005528: FK506 binding	1.72E-02
74	GO:0003714: transcription corepressor activity	1.72E-02
75	GO:0005385: zinc ion transmembrane transporter activity	1.72E-02
76	GO:0003777: microtubule motor activity	1.81E-02
77	GO:0015079: potassium ion transmembrane transporter activity	1.84E-02
78	GO:0008324: cation transmembrane transporter activity	1.84E-02
79	GO:0019706: protein-cysteine S-palmitoyltransferase activity	1.97E-02
80	GO:0008408: 3'-5' exonuclease activity	1.97E-02
81	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	2.10E-02
82	GO:0030570: pectate lyase activity	2.23E-02
83	GO:0016760: cellulose synthase (UDP-forming) activity	2.23E-02
84	GO:0003727: single-stranded RNA binding	2.37E-02
85	GO:0008080: N-acetyltransferase activity	2.80E-02
86	GO:0005355: glucose transmembrane transporter activity	2.95E-02
87	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	2.99E-02
88	GO:0004252: serine-type endopeptidase activity	3.23E-02
89	GO:0019825: oxygen binding	3.39E-02
90	GO:0000156: phosphorelay response regulator activity	3.57E-02
91	GO:0051015: actin filament binding	3.57E-02
92	GO:0005524: ATP binding	3.68E-02
93	GO:0016759: cellulose synthase activity	3.73E-02
94	GO:0015297: antiporter activity	3.83E-02
95	GO:0016722: oxidoreductase activity, oxidizing metal ions	3.89E-02
96	GO:0005200: structural constituent of cytoskeleton	3.89E-02
97	GO:0016597: amino acid binding	4.06E-02
98	GO:0015250: water channel activity	4.23E-02
99	GO:0005515: protein binding	4.36E-02
100	GO:0102483: scopolin beta-glucosidase activity	4.75E-02
101	GO:0004721: phosphoprotein phosphatase activity	4.75E-02
102	GO:0008236: serine-type peptidase activity	4.92E-02