gene detail

Gene description

TAIR ID: AT5G56600

Short description: profilin 3

Pathogen responsiveness: -0.95

General responsiveness: 0.52

Orthologous

Rice: No orthologous gene

Maize: No orthologous gene

Wheat: No orthologous gene

GO biological process

lateral root development, sequestering of actin monomers, regulation of unidimensional cell growth, seed germination, cytoskeleton organization, actin filament polymerization, seedling development

GO cellular component

actin cytoskeleton, chloroplast, cytoplasm, cell cortex, nucleus

GO molecular function

actin monomer binding

Protein domain

Pfam	PF00235, Profilin
SMART	SM00392, PROF

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation

Regulator:
AT2G47190

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 5

click to view PPI network

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE26679_WT_GC  view
GSE56094_WT_HRPA-  view
GSE13739_WT_GO  view
GSE5686_WT_GO  view
GSE56094_WT_PSTDC3000  view
GSE45212_MED14_PSTDC3000_AVRRPT2  view

Differentially expressed condition

4 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE37269	St0, WT, control	St0, WT, TEV 21 d	-1.64	1.60E-03
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 12 h	-1.68	5.58E-10
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 8 h	-1.75	2.89E-10
GSE56094	Col, WT, control 13 h	Col, WT, PstDC3000 13 h	-1.59	1.68E-11