co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G56600

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1905177: tracheary element differentiation	0.00E+00
2	GO:0000488: maturation of LSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)	0.00E+00
3	GO:0006399: tRNA metabolic process	0.00E+00
4	GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process	0.00E+00
5	GO:0070979: protein K11-linked ubiquitination	0.00E+00
6	GO:2000505: regulation of energy homeostasis	0.00E+00
7	GO:0010081: regulation of inflorescence meristem growth	0.00E+00
8	GO:0090071: negative regulation of ribosome biogenesis	0.00E+00
9	GO:0000489: maturation of SSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)	0.00E+00
10	GO:0006573: valine metabolic process	0.00E+00
11	GO:0000455: enzyme-directed rRNA pseudouridine synthesis	0.00E+00
12	GO:0006114: glycerol biosynthetic process	0.00E+00
13	GO:0000372: Group I intron splicing	0.00E+00
14	GO:0000373: Group II intron splicing	6.18E-07
15	GO:0045038: protein import into chloroplast thylakoid membrane	2.13E-06
16	GO:2001141: regulation of RNA biosynthetic process	5.54E-05
17	GO:0010207: photosystem II assembly	1.28E-04
18	GO:0016123: xanthophyll biosynthetic process	1.51E-04
19	GO:0080110: sporopollenin biosynthetic process	1.51E-04
20	GO:0009793: embryo development ending in seed dormancy	1.90E-04
21	GO:0000012: single strand break repair	4.05E-04
22	GO:0043266: regulation of potassium ion transport	4.05E-04
23	GO:0010080: regulation of floral meristem growth	4.05E-04
24	GO:0006551: leucine metabolic process	4.05E-04
25	GO:2000021: regulation of ion homeostasis	4.05E-04
26	GO:0006436: tryptophanyl-tRNA aminoacylation	4.05E-04
27	GO:0000066: mitochondrial ornithine transport	4.05E-04
28	GO:1902458: positive regulation of stomatal opening	4.05E-04
29	GO:0046901: tetrahydrofolylpolyglutamate biosynthetic process	4.05E-04
30	GO:0009090: homoserine biosynthetic process	4.05E-04
31	GO:0016117: carotenoid biosynthetic process	4.28E-04
32	GO:0048564: photosystem I assembly	4.71E-04
33	GO:0006353: DNA-templated transcription, termination	4.71E-04
34	GO:0032544: plastid translation	5.75E-04
35	GO:0071482: cellular response to light stimulus	5.75E-04
36	GO:0009451: RNA modification	6.36E-04
37	GO:0001682: tRNA 5'-leader removal	8.76E-04
38	GO:1903426: regulation of reactive oxygen species biosynthetic process	8.76E-04
39	GO:0010024: phytochromobilin biosynthetic process	8.76E-04
40	GO:0060359: response to ammonium ion	8.76E-04
41	GO:0048255: mRNA stabilization	8.76E-04
42	GO:1900871: chloroplast mRNA modification	8.76E-04
43	GO:0006352: DNA-templated transcription, initiation	1.09E-03
44	GO:0010582: floral meristem determinacy	1.24E-03
45	GO:0010623: programmed cell death involved in cell development	1.42E-03
46	GO:0051604: protein maturation	1.42E-03
47	GO:0006696: ergosterol biosynthetic process	1.42E-03
48	GO:0043157: response to cation stress	1.42E-03
49	GO:0006788: heme oxidation	1.42E-03
50	GO:0010022: meristem determinacy	1.42E-03
51	GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition	1.42E-03
52	GO:0031145: anaphase-promoting complex-dependent catabolic process	1.42E-03
53	GO:0009067: aspartate family amino acid biosynthetic process	2.06E-03
54	GO:0051513: regulation of monopolar cell growth	2.06E-03
55	GO:0030071: regulation of mitotic metaphase/anaphase transition	2.06E-03
56	GO:0051639: actin filament network formation	2.06E-03
57	GO:0010239: chloroplast mRNA processing	2.06E-03
58	GO:0009226: nucleotide-sugar biosynthetic process	2.06E-03
59	GO:1990019: protein storage vacuole organization	2.06E-03
60	GO:0046739: transport of virus in multicellular host	2.06E-03
61	GO:0051781: positive regulation of cell division	2.76E-03
62	GO:0051764: actin crosslink formation	2.76E-03
63	GO:0048442: sepal development	2.76E-03
64	GO:0051322: anaphase	2.76E-03
65	GO:0010508: positive regulation of autophagy	2.76E-03
66	GO:0008295: spermidine biosynthetic process	2.76E-03
67	GO:0010584: pollen exine formation	3.47E-03
68	GO:0010236: plastoquinone biosynthetic process	3.54E-03
69	GO:0010158: abaxial cell fate specification	3.54E-03
70	GO:0032876: negative regulation of DNA endoreduplication	3.54E-03
71	GO:0008033: tRNA processing	4.07E-03
72	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	4.38E-03
73	GO:0009959: negative gravitropism	4.38E-03
74	GO:0016554: cytidine to uridine editing	4.38E-03
75	GO:0006655: phosphatidylglycerol biosynthetic process	4.38E-03
76	GO:0010190: cytochrome b6f complex assembly	4.38E-03
77	GO:0007059: chromosome segregation	4.71E-03
78	GO:0009099: valine biosynthetic process	5.27E-03
79	GO:0030488: tRNA methylation	5.27E-03
80	GO:0009088: threonine biosynthetic process	5.27E-03
81	GO:0009648: photoperiodism	5.27E-03
82	GO:0042372: phylloquinone biosynthetic process	5.27E-03
83	GO:1901259: chloroplast rRNA processing	5.27E-03
84	GO:0010076: maintenance of floral meristem identity	5.27E-03
85	GO:0009082: branched-chain amino acid biosynthetic process	5.27E-03
86	GO:0017148: negative regulation of translation	5.27E-03
87	GO:0048316: seed development	5.36E-03
88	GO:0000302: response to reactive oxygen species	5.42E-03
89	GO:0009658: chloroplast organization	5.60E-03
90	GO:0007264: small GTPase mediated signal transduction	5.79E-03
91	GO:0016032: viral process	5.79E-03
92	GO:0015693: magnesium ion transport	6.23E-03
93	GO:0009395: phospholipid catabolic process	6.23E-03
94	GO:0010050: vegetative phase change	6.23E-03
95	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	6.23E-03
96	GO:0032875: regulation of DNA endoreduplication	7.25E-03
97	GO:2000070: regulation of response to water deprivation	7.25E-03
98	GO:0010492: maintenance of shoot apical meristem identity	7.25E-03
99	GO:0042255: ribosome assembly	7.25E-03
100	GO:0070413: trehalose metabolism in response to stress	7.25E-03
101	GO:0009850: auxin metabolic process	7.25E-03
102	GO:0010027: thylakoid membrane organization	7.85E-03
103	GO:0009097: isoleucine biosynthetic process	8.32E-03
104	GO:0010497: plasmodesmata-mediated intercellular transport	8.32E-03
105	GO:0009657: plastid organization	8.32E-03
106	GO:0006098: pentose-phosphate shunt	9.45E-03
107	GO:0048507: meristem development	9.45E-03
108	GO:0010206: photosystem II repair	9.45E-03
109	GO:0009086: methionine biosynthetic process	1.06E-02
110	GO:1900865: chloroplast RNA modification	1.06E-02
111	GO:0006259: DNA metabolic process	1.19E-02
112	GO:0048441: petal development	1.19E-02
113	GO:0006265: DNA topological change	1.31E-02
114	GO:0009089: lysine biosynthetic process via diaminopimelate	1.31E-02
115	GO:0006415: translational termination	1.31E-02
116	GO:0016024: CDP-diacylglycerol biosynthetic process	1.45E-02
117	GO:0045037: protein import into chloroplast stroma	1.45E-02
118	GO:0006839: mitochondrial transport	1.49E-02
119	GO:0006397: mRNA processing	1.50E-02
120	GO:0006094: gluconeogenesis	1.58E-02
121	GO:0006302: double-strand break repair	1.73E-02
122	GO:0048440: carpel development	1.73E-02
123	GO:0051017: actin filament bundle assembly	2.18E-02
124	GO:0005992: trehalose biosynthetic process	2.18E-02
125	GO:0030150: protein import into mitochondrial matrix	2.18E-02
126	GO:0008299: isoprenoid biosynthetic process	2.33E-02
127	GO:0006418: tRNA aminoacylation for protein translation	2.33E-02
128	GO:0015992: proton transport	2.50E-02
129	GO:0010431: seed maturation	2.50E-02
130	GO:0035428: hexose transmembrane transport	2.66E-02
131	GO:0006730: one-carbon metabolic process	2.66E-02
132	GO:0009306: protein secretion	3.01E-02
133	GO:0010089: xylem development	3.01E-02
134	GO:0048443: stamen development	3.01E-02
135	GO:0019722: calcium-mediated signaling	3.01E-02
136	GO:0034220: ion transmembrane transport	3.37E-02
137	GO:0010087: phloem or xylem histogenesis	3.37E-02
138	GO:0046323: glucose import	3.55E-02
139	GO:0010268: brassinosteroid homeostasis	3.55E-02
140	GO:0045489: pectin biosynthetic process	3.55E-02
141	GO:0009958: positive gravitropism	3.55E-02
142	GO:0048544: recognition of pollen	3.74E-02
143	GO:0016132: brassinosteroid biosynthetic process	4.12E-02
144	GO:0032502: developmental process	4.32E-02
145	GO:0009630: gravitropism	4.32E-02
146	GO:0006914: autophagy	4.73E-02
147	GO:0016125: sterol metabolic process	4.73E-02
148	GO:0007267: cell-cell signaling	4.93E-02

Rank	GO Term	Adjusted P value
1	GO:0010355: homogentisate farnesyltransferase activity	0.00E+00
2	GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity	0.00E+00
3	GO:0005048: signal sequence binding	0.00E+00
4	GO:0043136: glycerol-3-phosphatase activity	0.00E+00
5	GO:0000121: glycerol-1-phosphatase activity	0.00E+00
6	GO:0010356: homogentisate geranylgeranyltransferase activity	0.00E+00
7	GO:0017005: 3'-tyrosyl-DNA phosphodiesterase activity	0.00E+00
8	GO:0004561: alpha-N-acetylglucosaminidase activity	0.00E+00
9	GO:0019144: ADP-sugar diphosphatase activity	0.00E+00
10	GO:0010357: homogentisate solanesyltransferase activity	0.00E+00
11	GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity	0.00E+00
12	GO:0050613: delta14-sterol reductase activity	0.00E+00
13	GO:0046905: phytoene synthase activity	0.00E+00
14	GO:0003723: RNA binding	4.59E-05
15	GO:0001053: plastid sigma factor activity	9.74E-05
16	GO:0016987: sigma factor activity	9.74E-05
17	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	4.05E-04
18	GO:0004830: tryptophan-tRNA ligase activity	4.05E-04
19	GO:0052624: 2-phytyl-1,4-naphthoquinone methyltransferase activity	4.05E-04
20	GO:0016784: 3-mercaptopyruvate sulfurtransferase activity	4.05E-04
21	GO:0016776: phosphotransferase activity, phosphate group as acceptor	4.05E-04
22	GO:0080042: ADP-glucose pyrophosphohydrolase activity	4.05E-04
23	GO:0005290: L-histidine transmembrane transporter activity	4.05E-04
24	GO:0051996: squalene synthase activity	4.05E-04
25	GO:0003984: acetolactate synthase activity	4.05E-04
26	GO:0043022: ribosome binding	4.71E-04
27	GO:0004310: farnesyl-diphosphate farnesyltransferase activity	8.76E-04
28	GO:0010291: carotene beta-ring hydroxylase activity	8.76E-04
29	GO:0080041: ADP-ribose pyrophosphohydrolase activity	8.76E-04
30	GO:0004326: tetrahydrofolylpolyglutamate synthase activity	8.76E-04
31	GO:0009977: proton motive force dependent protein transmembrane transporter activity	8.76E-04
32	GO:0004766: spermidine synthase activity	8.76E-04
33	GO:0000064: L-ornithine transmembrane transporter activity	8.76E-04
34	GO:0004412: homoserine dehydrogenase activity	8.76E-04
35	GO:0048531: beta-1,3-galactosyltransferase activity	8.76E-04
36	GO:0070402: NADPH binding	1.42E-03
37	GO:0016765: transferase activity, transferring alkyl or aryl (other than methyl) groups	1.42E-03
38	GO:0004148: dihydrolipoyl dehydrogenase activity	1.42E-03
39	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	1.59E-03
40	GO:0043023: ribosomal large subunit binding	2.06E-03
41	GO:0004300: enoyl-CoA hydratase activity	2.06E-03
42	GO:0015189: L-lysine transmembrane transporter activity	2.06E-03
43	GO:0004072: aspartate kinase activity	2.06E-03
44	GO:0015181: arginine transmembrane transporter activity	2.06E-03
45	GO:0009678: hydrogen-translocating pyrophosphatase activity	2.06E-03
46	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	2.06E-03
47	GO:0004792: thiosulfate sulfurtransferase activity	2.06E-03
48	GO:0016149: translation release factor activity, codon specific	2.06E-03
49	GO:0017172: cysteine dioxygenase activity	2.06E-03
50	GO:0005525: GTP binding	2.72E-03
51	GO:0004392: heme oxygenase (decyclizing) activity	2.76E-03
52	GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity	2.76E-03
53	GO:0005319: lipid transporter activity	2.76E-03
54	GO:0003924: GTPase activity	3.82E-03
55	GO:0003690: double-stranded DNA binding	4.34E-03
56	GO:0016688: L-ascorbate peroxidase activity	4.38E-03
57	GO:0004332: fructose-bisphosphate aldolase activity	4.38E-03
58	GO:0004526: ribonuclease P activity	4.38E-03
59	GO:0004130: cytochrome-c peroxidase activity	4.38E-03
60	GO:0004462: lactoylglutathione lyase activity	4.38E-03
61	GO:0004519: endonuclease activity	4.43E-03
62	GO:0050662: coenzyme binding	4.71E-03
63	GO:0004656: procollagen-proline 4-dioxygenase activity	5.27E-03
64	GO:0004017: adenylate kinase activity	5.27E-03
65	GO:0004427: inorganic diphosphatase activity	6.23E-03
66	GO:0008312: 7S RNA binding	7.25E-03
67	GO:0016597: amino acid binding	7.41E-03
68	GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity	8.32E-03
69	GO:0019843: rRNA binding	8.69E-03
70	GO:0003747: translation release factor activity	9.45E-03
71	GO:0008236: serine-type peptidase activity	9.75E-03
72	GO:0004805: trehalose-phosphatase activity	1.19E-02
73	GO:0004161: dimethylallyltranstransferase activity	1.31E-02
74	GO:0005089: Rho guanyl-nucleotide exchange factor activity	1.31E-02
75	GO:0015095: magnesium ion transmembrane transporter activity	1.58E-02
76	GO:0031072: heat shock protein binding	1.58E-02
77	GO:0009982: pseudouridine synthase activity	1.58E-02
78	GO:0015266: protein channel activity	1.58E-02
79	GO:0008081: phosphoric diester hydrolase activity	1.58E-02
80	GO:0008266: poly(U) RNA binding	1.73E-02
81	GO:0016491: oxidoreductase activity	2.11E-02
82	GO:0051536: iron-sulfur cluster binding	2.18E-02
83	GO:0031418: L-ascorbic acid binding	2.18E-02
84	GO:0005528: FK506 binding	2.18E-02
85	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	2.28E-02
86	GO:0051087: chaperone binding	2.33E-02
87	GO:0030570: pectate lyase activity	2.83E-02
88	GO:0003727: single-stranded RNA binding	3.01E-02
89	GO:0004812: aminoacyl-tRNA ligase activity	3.19E-02
90	GO:0016746: transferase activity, transferring acyl groups	3.34E-02
91	GO:0004527: exonuclease activity	3.55E-02
92	GO:0008536: Ran GTPase binding	3.55E-02
93	GO:0016853: isomerase activity	3.74E-02
94	GO:0005355: glucose transmembrane transporter activity	3.74E-02
95	GO:0010181: FMN binding	3.74E-02
96	GO:0019901: protein kinase binding	3.93E-02
97	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	4.16E-02
98	GO:0016829: lyase activity	4.38E-02
99	GO:0051015: actin filament binding	4.52E-02
100	GO:0016791: phosphatase activity	4.73E-02
101	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	4.90E-02

Rank	GO Term	Adjusted P value
1	GO:0005948: acetolactate synthase complex	0.00E+00
2	GO:0009507: chloroplast	3.55E-29
3	GO:0009570: chloroplast stroma	8.95E-09
4	GO:0080085: signal recognition particle, chloroplast targeting	7.32E-06
5	GO:0031969: chloroplast membrane	8.91E-05
6	GO:0030529: intracellular ribonucleoprotein complex	1.30E-04
7	GO:0009535: chloroplast thylakoid membrane	1.69E-04
8	GO:0009941: chloroplast envelope	3.12E-04
9	GO:0043190: ATP-binding cassette (ABC) transporter complex	4.05E-04
10	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	5.75E-04
11	GO:0009295: nucleoid	9.40E-04
12	GO:0009579: thylakoid	1.35E-03
13	GO:0009508: plastid chromosome	1.41E-03
14	GO:0033281: TAT protein transport complex	1.42E-03
15	GO:0032432: actin filament bundle	2.06E-03
16	GO:0042651: thylakoid membrane	2.43E-03
17	GO:0030663: COPI-coated vesicle membrane	2.76E-03
18	GO:0009330: DNA topoisomerase complex (ATP-hydrolyzing)	2.76E-03
19	GO:0009526: plastid envelope	2.76E-03
20	GO:0055035: plastid thylakoid membrane	3.54E-03
21	GO:0042807: central vacuole	6.23E-03
22	GO:0009536: plastid	6.65E-03
23	GO:0031305: integral component of mitochondrial inner membrane	7.25E-03
24	GO:0009501: amyloplast	7.25E-03
25	GO:0000326: protein storage vacuole	8.32E-03
26	GO:0009543: chloroplast thylakoid lumen	8.69E-03
27	GO:0005680: anaphase-promoting complex	9.45E-03
28	GO:0016604: nuclear body	1.06E-02
29	GO:0030125: clathrin vesicle coat	1.19E-02
30	GO:0005884: actin filament	1.31E-02
31	GO:0000311: plastid large ribosomal subunit	1.45E-02
32	GO:0031977: thylakoid lumen	1.55E-02
33	GO:0005578: proteinaceous extracellular matrix	1.58E-02
34	GO:0009574: preprophase band	1.58E-02
35	GO:0030176: integral component of endoplasmic reticulum membrane	1.87E-02
36	GO:0009654: photosystem II oxygen evolving complex	2.33E-02
37	GO:0009532: plastid stroma	2.50E-02
38	GO:0005744: mitochondrial inner membrane presequence translocase complex	3.01E-02
39	GO:0009706: chloroplast inner membrane	3.24E-02
40	GO:0010287: plastoglobule	3.84E-02
41	GO:0019898: extrinsic component of membrane	3.93E-02
42	GO:0031965: nuclear membrane	3.93E-02
43	GO:0005623: cell	4.16E-02