GO Enrichment Analysis of Co-expressed Genes with
AT5G56600
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009715: chalcone biosynthetic process | 0.00E+00 |
| 2 | GO:0046838: phosphorylated carbohydrate dephosphorylation | 0.00E+00 |
| 3 | GO:0042821: pyridoxal biosynthetic process | 0.00E+00 |
| 4 | GO:0015882: L-ascorbic acid transport | 0.00E+00 |
| 5 | GO:0019265: glycine biosynthetic process, by transamination of glyoxylate | 0.00E+00 |
| 6 | GO:0042820: vitamin B6 catabolic process | 0.00E+00 |
| 7 | GO:0070125: mitochondrial translational elongation | 0.00E+00 |
| 8 | GO:1901401: regulation of tetrapyrrole metabolic process | 0.00E+00 |
| 9 | GO:0015979: photosynthesis | 1.59E-11 |
| 10 | GO:0018298: protein-chromophore linkage | 2.94E-10 |
| 11 | GO:0090391: granum assembly | 6.22E-09 |
| 12 | GO:0009768: photosynthesis, light harvesting in photosystem I | 1.03E-08 |
| 13 | GO:0009644: response to high light intensity | 9.51E-08 |
| 14 | GO:0009645: response to low light intensity stimulus | 1.15E-06 |
| 15 | GO:0009642: response to light intensity | 1.77E-06 |
| 16 | GO:0010027: thylakoid membrane organization | 1.05E-05 |
| 17 | GO:0010207: photosystem II assembly | 1.70E-05 |
| 18 | GO:0015994: chlorophyll metabolic process | 2.11E-05 |
| 19 | GO:0006021: inositol biosynthetic process | 2.11E-05 |
| 20 | GO:0010218: response to far red light | 2.23E-05 |
| 21 | GO:0009637: response to blue light | 2.96E-05 |
| 22 | GO:0010114: response to red light | 4.85E-05 |
| 23 | GO:0046855: inositol phosphate dephosphorylation | 5.10E-05 |
| 24 | GO:0042549: photosystem II stabilization | 5.10E-05 |
| 25 | GO:0010189: vitamin E biosynthetic process | 7.14E-05 |
| 26 | GO:0010196: nonphotochemical quenching | 9.52E-05 |
| 27 | GO:0009769: photosynthesis, light harvesting in photosystem II | 9.52E-05 |
| 28 | GO:0009658: chloroplast organization | 1.15E-04 |
| 29 | GO:0048564: photosystem I assembly | 1.23E-04 |
| 30 | GO:0030091: protein repair | 1.23E-04 |
| 31 | GO:0033388: putrescine biosynthetic process from arginine | 1.64E-04 |
| 32 | GO:0009443: pyridoxal 5'-phosphate salvage | 1.64E-04 |
| 33 | GO:0071277: cellular response to calcium ion | 1.64E-04 |
| 34 | GO:0043686: co-translational protein modification | 1.64E-04 |
| 35 | GO:0010028: xanthophyll cycle | 1.64E-04 |
| 36 | GO:0006419: alanyl-tRNA aminoacylation | 1.64E-04 |
| 37 | GO:0010206: photosystem II repair | 1.87E-04 |
| 38 | GO:0010205: photoinhibition | 2.25E-04 |
| 39 | GO:0009773: photosynthetic electron transport in photosystem I | 3.08E-04 |
| 40 | GO:0043085: positive regulation of catalytic activity | 3.08E-04 |
| 41 | GO:0006790: sulfur compound metabolic process | 3.54E-04 |
| 42 | GO:0009915: phloem sucrose loading | 3.73E-04 |
| 43 | GO:0035304: regulation of protein dephosphorylation | 3.73E-04 |
| 44 | GO:0009629: response to gravity | 3.73E-04 |
| 45 | GO:0000256: allantoin catabolic process | 3.73E-04 |
| 46 | GO:0009446: putrescine biosynthetic process | 3.73E-04 |
| 47 | GO:0016122: xanthophyll metabolic process | 3.73E-04 |
| 48 | GO:0006729: tetrahydrobiopterin biosynthetic process | 3.73E-04 |
| 49 | GO:0034599: cellular response to oxidative stress | 4.24E-04 |
| 50 | GO:0009793: embryo development ending in seed dormancy | 4.37E-04 |
| 51 | GO:0046854: phosphatidylinositol phosphorylation | 5.09E-04 |
| 52 | GO:0010136: ureide catabolic process | 6.11E-04 |
| 53 | GO:0071492: cellular response to UV-A | 6.11E-04 |
| 54 | GO:0009269: response to desiccation | 7.57E-04 |
| 55 | GO:0006364: rRNA processing | 8.05E-04 |
| 56 | GO:0006145: purine nucleobase catabolic process | 8.73E-04 |
| 57 | GO:0051016: barbed-end actin filament capping | 8.73E-04 |
| 58 | GO:0042823: pyridoxal phosphate biosynthetic process | 8.73E-04 |
| 59 | GO:0009052: pentose-phosphate shunt, non-oxidative branch | 8.73E-04 |
| 60 | GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis | 8.73E-04 |
| 61 | GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly | 8.73E-04 |
| 62 | GO:0006020: inositol metabolic process | 8.73E-04 |
| 63 | GO:0009416: response to light stimulus | 1.04E-03 |
| 64 | GO:0009765: photosynthesis, light harvesting | 1.16E-03 |
| 65 | GO:0006109: regulation of carbohydrate metabolic process | 1.16E-03 |
| 66 | GO:0006221: pyrimidine nucleotide biosynthetic process | 1.16E-03 |
| 67 | GO:0071486: cellular response to high light intensity | 1.16E-03 |
| 68 | GO:0006662: glycerol ether metabolic process | 1.21E-03 |
| 69 | GO:0006656: phosphatidylcholine biosynthetic process | 1.47E-03 |
| 70 | GO:0016558: protein import into peroxisome matrix | 1.47E-03 |
| 71 | GO:0010236: plastoquinone biosynthetic process | 1.47E-03 |
| 72 | GO:0031365: N-terminal protein amino acid modification | 1.47E-03 |
| 73 | GO:0009117: nucleotide metabolic process | 1.80E-03 |
| 74 | GO:0071470: cellular response to osmotic stress | 2.17E-03 |
| 75 | GO:1901259: chloroplast rRNA processing | 2.17E-03 |
| 76 | GO:0015995: chlorophyll biosynthetic process | 2.52E-03 |
| 77 | GO:1900057: positive regulation of leaf senescence | 2.55E-03 |
| 78 | GO:0006400: tRNA modification | 2.55E-03 |
| 79 | GO:0009704: de-etiolation | 2.95E-03 |
| 80 | GO:0031540: regulation of anthocyanin biosynthetic process | 2.95E-03 |
| 81 | GO:0009231: riboflavin biosynthetic process | 2.95E-03 |
| 82 | GO:0032544: plastid translation | 3.37E-03 |
| 83 | GO:0017004: cytochrome complex assembly | 3.37E-03 |
| 84 | GO:0006979: response to oxidative stress | 3.63E-03 |
| 85 | GO:0009245: lipid A biosynthetic process | 3.81E-03 |
| 86 | GO:0006098: pentose-phosphate shunt | 3.81E-03 |
| 87 | GO:0009821: alkaloid biosynthetic process | 3.81E-03 |
| 88 | GO:0090333: regulation of stomatal closure | 3.81E-03 |
| 89 | GO:0000373: Group II intron splicing | 3.81E-03 |
| 90 | GO:0098656: anion transmembrane transport | 3.81E-03 |
| 91 | GO:0042254: ribosome biogenesis | 4.42E-03 |
| 92 | GO:0019684: photosynthesis, light reaction | 5.25E-03 |
| 93 | GO:0072593: reactive oxygen species metabolic process | 5.25E-03 |
| 94 | GO:0080167: response to karrikin | 5.66E-03 |
| 95 | GO:0005983: starch catabolic process | 5.77E-03 |
| 96 | GO:0009409: response to cold | 6.08E-03 |
| 97 | GO:0006807: nitrogen compound metabolic process | 6.30E-03 |
| 98 | GO:0006006: glucose metabolic process | 6.30E-03 |
| 99 | GO:0006094: gluconeogenesis | 6.30E-03 |
| 100 | GO:0010224: response to UV-B | 6.31E-03 |
| 101 | GO:0019253: reductive pentose-phosphate cycle | 6.85E-03 |
| 102 | GO:0009266: response to temperature stimulus | 6.85E-03 |
| 103 | GO:0045454: cell redox homeostasis | 7.12E-03 |
| 104 | GO:0006096: glycolytic process | 7.21E-03 |
| 105 | GO:0019853: L-ascorbic acid biosynthetic process | 7.41E-03 |
| 106 | GO:0009863: salicylic acid mediated signaling pathway | 8.59E-03 |
| 107 | GO:0032259: methylation | 8.80E-03 |
| 108 | GO:0019953: sexual reproduction | 9.21E-03 |
| 109 | GO:0055114: oxidation-reduction process | 9.55E-03 |
| 110 | GO:0019915: lipid storage | 9.84E-03 |
| 111 | GO:0019748: secondary metabolic process | 1.05E-02 |
| 112 | GO:0009561: megagametogenesis | 1.18E-02 |
| 113 | GO:0009306: protein secretion | 1.18E-02 |
| 114 | GO:0009790: embryo development | 1.27E-02 |
| 115 | GO:0042335: cuticle development | 1.32E-02 |
| 116 | GO:0006606: protein import into nucleus | 1.32E-02 |
| 117 | GO:0048868: pollen tube development | 1.39E-02 |
| 118 | GO:0007623: circadian rhythm | 1.51E-02 |
| 119 | GO:0009791: post-embryonic development | 1.54E-02 |
| 120 | GO:0055072: iron ion homeostasis | 1.54E-02 |
| 121 | GO:0071554: cell wall organization or biogenesis | 1.62E-02 |
| 122 | GO:0010193: response to ozone | 1.62E-02 |
| 123 | GO:0006635: fatty acid beta-oxidation | 1.62E-02 |
| 124 | GO:0009735: response to cytokinin | 1.72E-02 |
| 125 | GO:0009611: response to wounding | 1.98E-02 |
| 126 | GO:0009627: systemic acquired resistance | 2.27E-02 |
| 127 | GO:0042128: nitrate assimilation | 2.27E-02 |
| 128 | GO:0016311: dephosphorylation | 2.45E-02 |
| 129 | GO:0009817: defense response to fungus, incompatible interaction | 2.54E-02 |
| 130 | GO:0009813: flavonoid biosynthetic process | 2.63E-02 |
| 131 | GO:0006811: ion transport | 2.72E-02 |
| 132 | GO:0007568: aging | 2.82E-02 |
| 133 | GO:0009853: photorespiration | 3.01E-02 |
| 134 | GO:0009867: jasmonic acid mediated signaling pathway | 3.01E-02 |
| 135 | GO:0006631: fatty acid metabolic process | 3.40E-02 |
| 136 | GO:0009926: auxin polar transport | 3.60E-02 |
| 137 | GO:0031347: regulation of defense response | 4.12E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0046406: magnesium protoporphyrin IX methyltransferase activity | 0.00E+00 |
| 2 | GO:0050236: pyridoxine:NADP 4-dehydrogenase activity | 0.00E+00 |
| 3 | GO:0071522: ureidoglycine aminohydrolase activity | 0.00E+00 |
| 4 | GO:0009976: tocopherol cyclase activity | 0.00E+00 |
| 5 | GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors | 0.00E+00 |
| 6 | GO:0004760: serine-pyruvate transaminase activity | 0.00E+00 |
| 7 | GO:0042623: ATPase activity, coupled | 0.00E+00 |
| 8 | GO:0016210: naringenin-chalcone synthase activity | 0.00E+00 |
| 9 | GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity | 0.00E+00 |
| 10 | GO:0015229: L-ascorbic acid transporter activity | 0.00E+00 |
| 11 | GO:0050126: N-carbamoylputrescine amidase activity | 0.00E+00 |
| 12 | GO:0048529: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity | 0.00E+00 |
| 13 | GO:0008942: nitrite reductase [NAD(P)H] activity | 0.00E+00 |
| 14 | GO:0035798: 2-alkenal reductase (NADP+) activity | 0.00E+00 |
| 15 | GO:0050281: serine-glyoxylate transaminase activity | 0.00E+00 |
| 16 | GO:0000906: 6,7-dimethyl-8-ribityllumazine synthase activity | 0.00E+00 |
| 17 | GO:0016168: chlorophyll binding | 1.30E-10 |
| 18 | GO:0031409: pigment binding | 5.60E-09 |
| 19 | GO:0008934: inositol monophosphate 1-phosphatase activity | 1.32E-06 |
| 20 | GO:0052833: inositol monophosphate 4-phosphatase activity | 1.32E-06 |
| 21 | GO:0052832: inositol monophosphate 3-phosphatase activity | 1.32E-06 |
| 22 | GO:0031072: heat shock protein binding | 1.38E-05 |
| 23 | GO:0046872: metal ion binding | 3.90E-05 |
| 24 | GO:0033743: peptide-methionine (R)-S-oxide reductase activity | 7.14E-05 |
| 25 | GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity | 7.14E-05 |
| 26 | GO:0004451: isocitrate lyase activity | 1.64E-04 |
| 27 | GO:0050308: sugar-phosphatase activity | 1.64E-04 |
| 28 | GO:0004813: alanine-tRNA ligase activity | 1.64E-04 |
| 29 | GO:0010242: oxygen evolving activity | 1.64E-04 |
| 30 | GO:0042586: peptide deformylase activity | 1.64E-04 |
| 31 | GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity | 1.64E-04 |
| 32 | GO:0019203: carbohydrate phosphatase activity | 1.64E-04 |
| 33 | GO:0010347: L-galactose-1-phosphate phosphatase activity | 1.64E-04 |
| 34 | GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity | 1.64E-04 |
| 35 | GO:0016784: 3-mercaptopyruvate sulfurtransferase activity | 1.64E-04 |
| 36 | GO:0035671: enone reductase activity | 1.64E-04 |
| 37 | GO:0008047: enzyme activator activity | 2.65E-04 |
| 38 | GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity | 3.73E-04 |
| 39 | GO:0019172: glyoxalase III activity | 3.73E-04 |
| 40 | GO:0000234: phosphoethanolamine N-methyltransferase activity | 3.73E-04 |
| 41 | GO:0047746: chlorophyllase activity | 3.73E-04 |
| 42 | GO:0003913: DNA photolyase activity | 6.11E-04 |
| 43 | GO:0004751: ribose-5-phosphate isomerase activity | 6.11E-04 |
| 44 | GO:0070402: NADPH binding | 6.11E-04 |
| 45 | GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor | 6.11E-04 |
| 46 | GO:0009041: uridylate kinase activity | 8.73E-04 |
| 47 | GO:0035529: NADH pyrophosphatase activity | 8.73E-04 |
| 48 | GO:0004792: thiosulfate sulfurtransferase activity | 8.73E-04 |
| 49 | GO:0022891: substrate-specific transmembrane transporter activity | 8.97E-04 |
| 50 | GO:0047134: protein-disulfide reductase activity | 1.05E-03 |
| 51 | GO:0008453: alanine-glyoxylate transaminase activity | 1.16E-03 |
| 52 | GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds | 1.16E-03 |
| 53 | GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | 1.16E-03 |
| 54 | GO:0051082: unfolded protein binding | 1.24E-03 |
| 55 | GO:0004791: thioredoxin-disulfide reductase activity | 1.30E-03 |
| 56 | GO:0016853: isomerase activity | 1.30E-03 |
| 57 | GO:0019843: rRNA binding | 1.65E-03 |
| 58 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 1.69E-03 |
| 59 | GO:0004332: fructose-bisphosphate aldolase activity | 1.80E-03 |
| 60 | GO:0000293: ferric-chelate reductase activity | 1.80E-03 |
| 61 | GO:0031177: phosphopantetheine binding | 1.80E-03 |
| 62 | GO:0004462: lactoylglutathione lyase activity | 1.80E-03 |
| 63 | GO:0016462: pyrophosphatase activity | 1.80E-03 |
| 64 | GO:2001070: starch binding | 1.80E-03 |
| 65 | GO:0000035: acyl binding | 2.17E-03 |
| 66 | GO:0009881: photoreceptor activity | 2.55E-03 |
| 67 | GO:0008757: S-adenosylmethionine-dependent methyltransferase activity | 2.65E-03 |
| 68 | GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process | 2.95E-03 |
| 69 | GO:0004033: aldo-keto reductase (NADP) activity | 2.95E-03 |
| 70 | GO:0008135: translation factor activity, RNA binding | 3.37E-03 |
| 71 | GO:0003746: translation elongation factor activity | 3.52E-03 |
| 72 | GO:0008138: protein tyrosine/serine/threonine phosphatase activity | 3.81E-03 |
| 73 | GO:0016844: strictosidine synthase activity | 4.27E-03 |
| 74 | GO:0051537: 2 iron, 2 sulfur cluster binding | 4.90E-03 |
| 75 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 5.28E-03 |
| 76 | GO:0000049: tRNA binding | 5.77E-03 |
| 77 | GO:0005315: inorganic phosphate transmembrane transporter activity | 6.30E-03 |
| 78 | GO:0008266: poly(U) RNA binding | 6.85E-03 |
| 79 | GO:0005528: FK506 binding | 8.59E-03 |
| 80 | GO:0004857: enzyme inhibitor activity | 8.59E-03 |
| 81 | GO:0015035: protein disulfide oxidoreductase activity | 8.94E-03 |
| 82 | GO:0003756: protein disulfide isomerase activity | 1.18E-02 |
| 83 | GO:0008514: organic anion transmembrane transporter activity | 1.18E-02 |
| 84 | GO:0008565: protein transporter activity | 1.30E-02 |
| 85 | GO:0048038: quinone binding | 1.62E-02 |
| 86 | GO:0042802: identical protein binding | 1.92E-02 |
| 87 | GO:0016597: amino acid binding | 2.02E-02 |
| 88 | GO:0016413: O-acetyltransferase activity | 2.02E-02 |
| 89 | GO:0030145: manganese ion binding | 2.82E-02 |
| 90 | GO:0003993: acid phosphatase activity | 3.10E-02 |
| 91 | GO:0050661: NADP binding | 3.30E-02 |
| 92 | GO:0004185: serine-type carboxypeptidase activity | 3.60E-02 |
| 93 | GO:0005198: structural molecule activity | 3.91E-02 |
| 94 | GO:0051287: NAD binding | 4.12E-02 |
| 95 | GO:0005509: calcium ion binding | 4.19E-02 |
| 96 | GO:0003924: GTPase activity | 4.26E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009515: granal stacked thylakoid | 0.00E+00 |
| 2 | GO:0009349: riboflavin synthase complex | 0.00E+00 |
| 3 | GO:0009507: chloroplast | 8.04E-53 |
| 4 | GO:0009535: chloroplast thylakoid membrane | 3.38E-39 |
| 5 | GO:0009534: chloroplast thylakoid | 2.59E-27 |
| 6 | GO:0009941: chloroplast envelope | 1.20E-20 |
| 7 | GO:0009579: thylakoid | 1.50E-15 |
| 8 | GO:0009570: chloroplast stroma | 1.45E-14 |
| 9 | GO:0010287: plastoglobule | 1.03E-12 |
| 10 | GO:0009523: photosystem II | 1.85E-11 |
| 11 | GO:0009543: chloroplast thylakoid lumen | 1.69E-09 |
| 12 | GO:0031977: thylakoid lumen | 5.68E-08 |
| 13 | GO:0030095: chloroplast photosystem II | 2.72E-07 |
| 14 | GO:0030076: light-harvesting complex | 3.59E-07 |
| 15 | GO:0009522: photosystem I | 3.46E-06 |
| 16 | GO:0009706: chloroplast inner membrane | 1.22E-05 |
| 17 | GO:0009517: PSII associated light-harvesting complex II | 2.11E-05 |
| 18 | GO:0009654: photosystem II oxygen evolving complex | 3.48E-05 |
| 19 | GO:0019898: extrinsic component of membrane | 1.09E-04 |
| 20 | GO:0009782: photosystem I antenna complex | 1.64E-04 |
| 21 | GO:0042644: chloroplast nucleoid | 1.87E-04 |
| 22 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 1.87E-04 |
| 23 | GO:0008290: F-actin capping protein complex | 3.73E-04 |
| 24 | GO:0033281: TAT protein transport complex | 6.11E-04 |
| 25 | GO:0042646: plastid nucleoid | 8.73E-04 |
| 26 | GO:0005778: peroxisomal membrane | 1.91E-03 |
| 27 | GO:0009533: chloroplast stromal thylakoid | 2.55E-03 |
| 28 | GO:0009538: photosystem I reaction center | 2.95E-03 |
| 29 | GO:0008180: COP9 signalosome | 3.81E-03 |
| 30 | GO:0012511: monolayer-surrounded lipid storage body | 5.25E-03 |
| 31 | GO:0009508: plastid chromosome | 6.30E-03 |
| 32 | GO:0016021: integral component of membrane | 1.08E-02 |
| 33 | GO:0005623: cell | 1.12E-02 |
| 34 | GO:0009295: nucleoid | 1.94E-02 |
| 35 | GO:0010319: stromule | 1.94E-02 |
| 36 | GO:0019005: SCF ubiquitin ligase complex | 2.54E-02 |
| 37 | GO:0015934: large ribosomal subunit | 2.82E-02 |
| 38 | GO:0048046: apoplast | 3.30E-02 |
| 39 | GO:0000502: proteasome complex | 4.45E-02 |
| 40 | GO:0005840: ribosome | 4.89E-02 |