gene detail

Gene description

TAIR ID: AT5G55580

Short description: Mitochondrial transcription termination factor family protein

Pathogen responsiveness: -0.39

General responsiveness: -0.51

Orthologous

Rice: No orthologous gene

Maize:

GRMZM2G130773

Wheat: No orthologous gene

GO biological process

root development, DNA-templated transcription, termination, shoot system development, regulation of transcription, DNA-templated, RNA splicing, response to salt stress, chloroplast organization, ribosome assembly

GO cellular component

mitochondrion, chloroplast

GO molecular function

single-stranded RNA binding, double-stranded DNA binding, rRNA binding

Protein domain

Pfam	PF02536, mTERF
SMART	SM00733, Mterf

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation

Regulator:
AT4G18770, AT5G61850, AT4G36990

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 1

click to view PPI network

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE5686_WT_GO  view
GSE45212_MED14_PSTDC3000_AVRRPT2  view

Differentially expressed condition

17 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE17464	Laer, control	Laer, Flg22 1 h	-1.54	4.92E-04
GSE17464	Penta, control	Penta, Flg22 2 h	-1.79	5.89E-05
GSE17500	Col, WT, control 0 h	Col, WT, PstDC3000 24 h	-1.86	9.28E-06
GSE17500	Col, miR393, control 0 h	Col, miR393, PstDC3000 24 h	-1.52	7.73E-05
GSE18978	Col, WT, control 24 h	Col, WT, PsmES4326 24 h	-1.96	1.50E-08
GSE37269	Ei2, WT, control	Ei2, WT, TEV 21 d	-1.66	1.92E-02
GSE37269	St0, WT, control	St0, WT, TEV 21 d	-1.95	3.90E-03
GSE40544	Col, WT, control	Col, WT, PstDC3000 AvrRpt2	-1.73	2.82E-05
GSE40544	Col, WT, control	Col, WT, PstDC3000 EV	-1.89	9.62E-06
GSE40544	Col, Sid2, control	Col, Sid2, PstDC3000 AvrRpt2	-1.75	2.54E-05
GSE40544	Col, Sid2, control	Col, Sid2, PstDC3000 EV	-1.59	1.78E-04
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 12 h	-1.88	1.72E-14
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 4 h	-1.60	8.89E-13
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 8 h	-1.93	1.91E-14
GSE45214	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 4 h	-1.76	7.46E-12
GSE45214	Col, med16, PstDC3000 AvrRpt2 0 h	Col, med16, PstDC3000 AvrRpt2 4 h	-2.54	1.11E-14
GSE52979	Col, WT, oxo_C14_HSL	Col, WT, oxo_C14_HSL flg22_2 h	-1.59	5.98E-09