Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G55580

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:1900037: regulation of cellular response to hypoxia0.00E+00
2GO:0002103: endonucleolytic cleavage of tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)0.00E+00
3GO:0009686: gibberellin biosynthetic process4.14E-05
4GO:0043686: co-translational protein modification1.46E-04
5GO:0005983: starch catabolic process2.99E-04
6GO:0006741: NADP biosynthetic process3.33E-04
7GO:0031648: protein destabilization3.33E-04
8GO:0006650: glycerophospholipid metabolic process3.33E-04
9GO:0006863: purine nucleobase transport4.81E-04
10GO:0006518: peptide metabolic process5.47E-04
11GO:0016255: attachment of GPI anchor to protein5.47E-04
12GO:0048575: short-day photoperiodism, flowering5.47E-04
13GO:0019674: NAD metabolic process5.47E-04
14GO:0019363: pyridine nucleotide biosynthetic process7.83E-04
15GO:0016556: mRNA modification7.83E-04
16GO:0009740: gibberellic acid mediated signaling pathway9.37E-04
17GO:0048629: trichome patterning1.04E-03
18GO:0008654: phospholipid biosynthetic process1.19E-03
19GO:0031365: N-terminal protein amino acid modification1.31E-03
20GO:0006655: phosphatidylglycerol biosynthetic process1.61E-03
21GO:0080186: developmental vegetative growth2.27E-03
22GO:0009739: response to gibberellin2.30E-03
23GO:0009704: de-etiolation2.63E-03
24GO:0009657: plastid organization3.00E-03
25GO:0051865: protein autoubiquitination3.40E-03
26GO:0005982: starch metabolic process3.81E-03
27GO:1900865: chloroplast RNA modification3.81E-03
28GO:0031425: chloroplast RNA processing3.81E-03
29GO:0009870: defense response signaling pathway, resistance gene-dependent4.23E-03
30GO:0009641: shade avoidance4.23E-03
31GO:0010629: negative regulation of gene expression4.23E-03
32GO:0016024: CDP-diacylglycerol biosynthetic process5.13E-03
33GO:0010102: lateral root morphogenesis5.60E-03
34GO:0009887: animal organ morphogenesis6.09E-03
35GO:0006302: double-strand break repair6.09E-03
36GO:0090351: seedling development6.59E-03
37GO:0009969: xyloglucan biosynthetic process6.59E-03
38GO:0032259: methylation7.08E-03
39GO:0051321: meiotic cell cycle8.73E-03
40GO:0016114: terpenoid biosynthetic process8.73E-03
41GO:2000022: regulation of jasmonic acid mediated signaling pathway9.30E-03
42GO:0071215: cellular response to abscisic acid stimulus9.89E-03
43GO:0045492: xylan biosynthetic process1.05E-02
44GO:0009733: response to auxin1.22E-02
45GO:0006470: protein dephosphorylation1.45E-02
46GO:0032502: developmental process1.50E-02
47GO:0009639: response to red or far red light1.64E-02
48GO:0009567: double fertilization forming a zygote and endosperm1.64E-02
49GO:0010027: thylakoid membrane organization1.86E-02
50GO:0048573: photoperiodism, flowering2.09E-02
51GO:0009723: response to ethylene2.28E-02
52GO:0048527: lateral root development2.49E-02
53GO:0006865: amino acid transport2.58E-02
54GO:0045892: negative regulation of transcription, DNA-templated2.97E-02
55GO:0010114: response to red light3.19E-02
56GO:0042546: cell wall biogenesis3.28E-02
57GO:0016310: phosphorylation3.89E-02
RankGO TermAdjusted P value
1GO:0009899: ent-kaurene synthase activity0.00E+00
2GO:0051752: phosphoglucan, water dikinase activity0.00E+00
3GO:0042736: NADH kinase activity1.46E-04
4GO:0042586: peptide deformylase activity1.46E-04
5GO:0019156: isoamylase activity3.33E-04
6GO:0019200: carbohydrate kinase activity3.33E-04
7GO:0016707: gibberellin 3-beta-dioxygenase activity5.47E-04
8GO:0005345: purine nucleobase transmembrane transporter activity5.87E-04
9GO:0045544: gibberellin 20-oxidase activity7.83E-04
10GO:0070696: transmembrane receptor protein serine/threonine kinase binding1.31E-03
11GO:0008374: O-acyltransferase activity1.31E-03
12GO:0004556: alpha-amylase activity1.61E-03
13GO:2001070: starch binding1.61E-03
14GO:0004605: phosphatidate cytidylyltransferase activity1.61E-03
15GO:0016832: aldehyde-lyase activity1.93E-03
16GO:0003951: NAD+ kinase activity3.00E-03
17GO:0008378: galactosyltransferase activity5.13E-03
18GO:0004722: protein serine/threonine phosphatase activity6.45E-03
19GO:0003712: transcription cofactor activity6.59E-03
20GO:0008134: transcription factor binding7.63E-03
21GO:0004519: endonuclease activity8.33E-03
22GO:0008408: 3'-5' exonuclease activity8.73E-03
23GO:0010333: terpene synthase activity8.73E-03
24GO:0004518: nuclease activity1.50E-02
25GO:0004842: ubiquitin-protein transferase activity1.67E-02
26GO:0008168: methyltransferase activity1.89E-02
27GO:0000287: magnesium ion binding1.93E-02
28GO:0043531: ADP binding2.16E-02
29GO:0008757: S-adenosylmethionine-dependent methyltransferase activity2.17E-02
30GO:0004222: metalloendopeptidase activity2.41E-02
31GO:0030145: manganese ion binding2.49E-02
32GO:0016614: oxidoreductase activity, acting on CH-OH group of donors2.49E-02
33GO:0042803: protein homodimerization activity3.06E-02
34GO:0043621: protein self-association3.37E-02
35GO:0003777: microtubule motor activity4.24E-02
36GO:0015171: amino acid transmembrane transporter activity4.24E-02
RankGO TermAdjusted P value
1GO:0031224: intrinsic component of membrane0.00E+00
2GO:0000791: euchromatin1.46E-04
3GO:0030870: Mre11 complex3.33E-04
4GO:0009569: chloroplast starch grain3.33E-04
5GO:0042765: GPI-anchor transamidase complex5.47E-04
6GO:0000795: synaptonemal complex1.31E-03
7GO:0005875: microtubule associated complex7.10E-03
8GO:0009532: plastid stroma8.73E-03
9GO:0009504: cell plate1.37E-02
10GO:0000785: chromatin1.50E-02
11GO:0010008: endosome membrane4.54E-02
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Gene type



Gene DE type