gene detail

Gene description

TAIR ID: AT5G54770

Short description: thiazole biosynthetic enzyme, chloroplast (ARA6) (THI1) (THI4)

Pathogen responsiveness: -1.69

General responsiveness: 2.26

Orthologous

Rice:

OS07G0529600

Maize:

GRMZM2G074097

Wheat: No orthologous gene

GO biological process

thiamine biosynthetic process, oxazole or thiazole biosynthetic process, response to cold, cellular response to DNA damage stimulus, thiazole biosynthetic process

GO cellular component

chloroplast stroma, thylakoid, cytosol, chloroplast envelope, chloroplast, mitochondrion, plasma membrane

GO molecular function

protein homodimerization activity, iron ion binding

Protein domain

Pfam	PF01946, Thi4 family

Metabolic pathway

PWY-6909: thiazole biosynthesis III (eukaryotes)
THISYNARA-PWY: superpathway of thiamin diphosphate biosynthesis III (eukaryotes)

KEGG pathway

PATH:ath00730: Thiamine metabolism

Transcriptional regulation

Regulator:
AT5G13790, AT2G38250, AT5G49450, AT3G20770, AT4G36990

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 7

click to view PPI network

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE56094_WT_HRPA-  view
GSE13739_WT_GO  view
GSE45212_MED14_PSTDC3000_AVRRPT2  view

Differentially expressed condition

6 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE18978	Col, WT, control 24 h	Col, WT, PsmES4326 24 h	-2.23	1.91E-09
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 12 h	-2.21	1.98E-12
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 4 h	-1.52	5.20E-10
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 8 h	-2.25	1.31E-12
GSE5520	Col, WT, control 10 h	Col, WT, Cor- 10 h	-1.75	4.65E-03
GSE5520	Col, WT, control 7 h	Col, WT, PstDC3000 7 h	-2.10	1.12E-04