Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G54770

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:1901918: negative regulation of exoribonuclease activity0.00E+00
2GO:0042821: pyridoxal biosynthetic process0.00E+00
3GO:0035970: peptidyl-threonine dephosphorylation0.00E+00
4GO:0033614: chloroplast proton-transporting ATP synthase complex assembly0.00E+00
5GO:0052865: 1-deoxy-D-xylulose 5-phosphate biosynthetic process0.00E+00
6GO:0042820: vitamin B6 catabolic process0.00E+00
7GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly3.81E-08
8GO:0010027: thylakoid membrane organization1.35E-05
9GO:0015979: photosynthesis3.96E-05
10GO:0009791: post-embryonic development1.30E-04
11GO:0032544: plastid translation1.75E-04
12GO:0031998: regulation of fatty acid beta-oxidation1.80E-04
13GO:0009443: pyridoxal 5'-phosphate salvage1.80E-04
14GO:0043953: protein transport by the Tat complex1.80E-04
15GO:0006659: phosphatidylserine biosynthetic process1.80E-04
16GO:0065002: intracellular protein transmembrane transport1.80E-04
17GO:0080093: regulation of photorespiration1.80E-04
18GO:0006098: pentose-phosphate shunt2.13E-04
19GO:0055114: oxidation-reduction process2.51E-04
20GO:0018119: peptidyl-cysteine S-nitrosylation3.48E-04
21GO:0051645: Golgi localization4.05E-04
22GO:0034755: iron ion transmembrane transport4.05E-04
23GO:0071457: cellular response to ozone4.05E-04
24GO:0060151: peroxisome localization4.05E-04
25GO:0006094: gluconeogenesis4.55E-04
26GO:0048467: gynoecium development5.13E-04
27GO:0010114: response to red light6.46E-04
28GO:0051646: mitochondrion localization6.61E-04
29GO:0006954: inflammatory response6.61E-04
30GO:0090436: leaf pavement cell development6.61E-04
31GO:0006810: transport7.25E-04
32GO:0006166: purine ribonucleoside salvage9.45E-04
33GO:0071484: cellular response to light intensity9.45E-04
34GO:0009052: pentose-phosphate shunt, non-oxidative branch9.45E-04
35GO:0006168: adenine salvage9.45E-04
36GO:0009735: response to cytokinin1.11E-03
37GO:0006096: glycolytic process1.15E-03
38GO:0019676: ammonia assimilation cycle1.25E-03
39GO:0071486: cellular response to high light intensity1.25E-03
40GO:0009765: photosynthesis, light harvesting1.25E-03
41GO:0006109: regulation of carbohydrate metabolic process1.25E-03
42GO:0010107: potassium ion import1.25E-03
43GO:0006546: glycine catabolic process1.25E-03
44GO:0006021: inositol biosynthetic process1.25E-03
45GO:0006542: glutamine biosynthetic process1.25E-03
46GO:0019252: starch biosynthetic process1.57E-03
47GO:0006097: glyoxylate cycle1.59E-03
48GO:0044209: AMP salvage1.59E-03
49GO:0071493: cellular response to UV-B1.59E-03
50GO:0046907: intracellular transport1.59E-03
51GO:0098719: sodium ion import across plasma membrane1.59E-03
52GO:0006564: L-serine biosynthetic process1.59E-03
53GO:0010236: plastoquinone biosynthetic process1.59E-03
54GO:0000278: mitotic cell cycle1.59E-03
55GO:0006751: glutathione catabolic process1.96E-03
56GO:0042549: photosystem II stabilization1.96E-03
57GO:0010264: myo-inositol hexakisphosphate biosynthetic process1.96E-03
58GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway1.96E-03
59GO:0009228: thiamine biosynthetic process1.96E-03
60GO:0009955: adaxial/abaxial pattern specification2.35E-03
61GO:0045737: positive regulation of cyclin-dependent protein serine/threonine kinase activity2.35E-03
62GO:1901259: chloroplast rRNA processing2.35E-03
63GO:0010189: vitamin E biosynthetic process2.35E-03
64GO:0009769: photosynthesis, light harvesting in photosystem II2.77E-03
65GO:0009645: response to low light intensity stimulus2.77E-03
66GO:0015995: chlorophyll biosynthetic process2.84E-03
67GO:0046686: response to cadmium ion2.86E-03
68GO:0048564: photosystem I assembly3.21E-03
69GO:0010078: maintenance of root meristem identity3.21E-03
70GO:0055075: potassium ion homeostasis3.21E-03
71GO:0017004: cytochrome complex assembly3.67E-03
72GO:0071482: cellular response to light stimulus3.67E-03
73GO:0019430: removal of superoxide radicals3.67E-03
74GO:0009657: plastid organization3.67E-03
75GO:0043562: cellular response to nitrogen levels3.67E-03
76GO:0009821: alkaloid biosynthetic process4.15E-03
77GO:0090333: regulation of stomatal closure4.15E-03
78GO:0051453: regulation of intracellular pH4.65E-03
79GO:0005982: starch metabolic process4.65E-03
80GO:0007346: regulation of mitotic cell cycle4.65E-03
81GO:0009658: chloroplast organization5.04E-03
82GO:0006949: syncytium formation5.18E-03
83GO:0009684: indoleacetic acid biosynthetic process5.72E-03
84GO:0009773: photosynthetic electron transport in photosystem I5.72E-03
85GO:0019684: photosynthesis, light reaction5.72E-03
86GO:0009089: lysine biosynthetic process via diaminopimelate5.72E-03
87GO:0006415: translational termination5.72E-03
88GO:0043085: positive regulation of catalytic activity5.72E-03
89GO:0006879: cellular iron ion homeostasis5.72E-03
90GO:0016024: CDP-diacylglycerol biosynthetic process6.28E-03
91GO:0009767: photosynthetic electron transport chain6.86E-03
92GO:0010588: cotyledon vascular tissue pattern formation6.86E-03
93GO:0030048: actin filament-based movement6.86E-03
94GO:0006108: malate metabolic process6.86E-03
95GO:0010143: cutin biosynthetic process7.46E-03
96GO:0010020: chloroplast fission7.46E-03
97GO:0010207: photosystem II assembly7.46E-03
98GO:0019253: reductive pentose-phosphate cycle7.46E-03
99GO:0019853: L-ascorbic acid biosynthetic process8.08E-03
100GO:0042023: DNA endoreduplication8.71E-03
101GO:0007017: microtubule-based process1.00E-02
102GO:0009768: photosynthesis, light harvesting in photosystem I1.00E-02
103GO:0019915: lipid storage1.07E-02
104GO:0061077: chaperone-mediated protein folding1.07E-02
105GO:0009269: response to desiccation1.07E-02
106GO:0016114: terpenoid biosynthetic process1.07E-02
107GO:0016226: iron-sulfur cluster assembly1.14E-02
108GO:0006012: galactose metabolic process1.22E-02
109GO:0009686: gibberellin biosynthetic process1.22E-02
110GO:0009561: megagametogenesis1.29E-02
111GO:0016117: carotenoid biosynthetic process1.37E-02
112GO:0051028: mRNA transport1.37E-02
113GO:0042335: cuticle development1.44E-02
114GO:0080022: primary root development1.44E-02
115GO:0010087: phloem or xylem histogenesis1.44E-02
116GO:0010268: brassinosteroid homeostasis1.52E-02
117GO:0071472: cellular response to salt stress1.52E-02
118GO:0009958: positive gravitropism1.52E-02
119GO:0010154: fruit development1.52E-02
120GO:0006885: regulation of pH1.52E-02
121GO:0006662: glycerol ether metabolic process1.52E-02
122GO:0006633: fatty acid biosynthetic process1.55E-02
123GO:0006814: sodium ion transport1.60E-02
124GO:0009851: auxin biosynthetic process1.68E-02
125GO:0048825: cotyledon development1.68E-02
126GO:0008654: phospholipid biosynthetic process1.68E-02
127GO:0016132: brassinosteroid biosynthetic process1.77E-02
128GO:0010090: trichome morphogenesis1.94E-02
129GO:0009567: double fertilization forming a zygote and endosperm2.03E-02
130GO:0016125: sterol metabolic process2.03E-02
131GO:0009828: plant-type cell wall loosening2.03E-02
132GO:0042128: nitrate assimilation2.48E-02
133GO:0051301: cell division2.51E-02
134GO:0009409: response to cold2.51E-02
135GO:0016311: dephosphorylation2.68E-02
136GO:0016049: cell growth2.68E-02
137GO:0009817: defense response to fungus, incompatible interaction2.77E-02
138GO:0018298: protein-chromophore linkage2.77E-02
139GO:0010218: response to far red light2.97E-02
140GO:0007568: aging3.08E-02
141GO:0048527: lateral root development3.08E-02
142GO:0010119: regulation of stomatal movement3.08E-02
143GO:0009637: response to blue light3.28E-02
144GO:0006099: tricarboxylic acid cycle3.39E-02
145GO:0034599: cellular response to oxidative stress3.39E-02
146GO:0051707: response to other organism3.93E-02
147GO:0009644: response to high light intensity4.16E-02
148GO:0006855: drug transmembrane transport4.39E-02
149GO:0032259: methylation4.61E-02
150GO:0009664: plant-type cell wall organization4.62E-02
151GO:0016042: lipid catabolic process4.68E-02
152GO:0006486: protein glycosylation4.86E-02
153GO:0051603: proteolysis involved in cellular protein catabolic process4.98E-02
RankGO TermAdjusted P value
1GO:0010349: L-galactose dehydrogenase activity0.00E+00
2GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
3GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity0.00E+00
4GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
5GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor1.12E-07
6GO:0009011: starch synthase activity1.12E-07
7GO:0004332: fructose-bisphosphate aldolase activity5.89E-05
8GO:0004033: aldo-keto reductase (NADP) activity1.40E-04
9GO:0048038: quinone binding1.44E-04
10GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity1.80E-04
11GO:0051777: ent-kaurenoate oxidase activity1.80E-04
12GO:0009374: biotin binding1.80E-04
13GO:0004328: formamidase activity1.80E-04
14GO:0004618: phosphoglycerate kinase activity4.05E-04
15GO:0003839: gamma-glutamylcyclotransferase activity4.05E-04
16GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity4.05E-04
17GO:0009977: proton motive force dependent protein transmembrane transporter activity4.05E-04
18GO:0004617: phosphoglycerate dehydrogenase activity4.05E-04
19GO:0004047: aminomethyltransferase activity4.05E-04
20GO:0008661: 1-deoxy-D-xylulose-5-phosphate synthase activity4.05E-04
21GO:0033201: alpha-1,4-glucan synthase activity4.05E-04
22GO:0004312: fatty acid synthase activity4.05E-04
23GO:0080097: L-tryptophan:pyruvate aminotransferase activity4.05E-04
24GO:0004512: inositol-3-phosphate synthase activity4.05E-04
25GO:0061575: cyclin-dependent protein serine/threonine kinase activator activity4.05E-04
26GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase4.05E-04
27GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity6.61E-04
28GO:0004373: glycogen (starch) synthase activity6.61E-04
29GO:0004751: ribose-5-phosphate isomerase activity6.61E-04
30GO:0070402: NADPH binding6.61E-04
31GO:0005528: FK506 binding7.06E-04
32GO:0003999: adenine phosphoribosyltransferase activity9.45E-04
33GO:0016851: magnesium chelatase activity9.45E-04
34GO:0016149: translation release factor activity, codon specific9.45E-04
35GO:0003883: CTP synthase activity9.45E-04
36GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides9.45E-04
37GO:0004045: aminoacyl-tRNA hydrolase activity1.25E-03
38GO:0004356: glutamate-ammonia ligase activity1.59E-03
39GO:0003989: acetyl-CoA carboxylase activity1.59E-03
40GO:0016846: carbon-sulfur lyase activity1.59E-03
41GO:0004366: glycerol-3-phosphate O-acyltransferase activity1.96E-03
42GO:0004784: superoxide dismutase activity1.96E-03
43GO:0015081: sodium ion transmembrane transporter activity1.96E-03
44GO:0016615: malate dehydrogenase activity1.96E-03
45GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity1.96E-03
46GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity2.35E-03
47GO:0030060: L-malate dehydrogenase activity2.35E-03
48GO:0008135: translation factor activity, RNA binding3.67E-03
49GO:0003746: translation elongation factor activity3.98E-03
50GO:0003747: translation release factor activity4.15E-03
51GO:0004712: protein serine/threonine/tyrosine kinase activity4.34E-03
52GO:0005381: iron ion transmembrane transporter activity4.65E-03
53GO:0016844: strictosidine synthase activity4.65E-03
54GO:0016788: hydrolase activity, acting on ester bonds5.17E-03
55GO:0008047: enzyme activator activity5.18E-03
56GO:0047372: acylglycerol lipase activity5.72E-03
57GO:0015386: potassium:proton antiporter activity5.72E-03
58GO:0003755: peptidyl-prolyl cis-trans isomerase activity5.98E-03
59GO:0008378: galactosyltransferase activity6.28E-03
60GO:0031072: heat shock protein binding6.86E-03
61GO:0003725: double-stranded RNA binding6.86E-03
62GO:0004022: alcohol dehydrogenase (NAD) activity6.86E-03
63GO:0003774: motor activity7.46E-03
64GO:0031409: pigment binding8.71E-03
65GO:0051536: iron-sulfur cluster binding9.37E-03
66GO:0004857: enzyme inhibitor activity9.37E-03
67GO:0043130: ubiquitin binding9.37E-03
68GO:0003924: GTPase activity1.09E-02
69GO:0030570: pectate lyase activity1.22E-02
70GO:0019843: rRNA binding1.23E-02
71GO:0003727: single-stranded RNA binding1.29E-02
72GO:0047134: protein-disulfide reductase activity1.37E-02
73GO:0005509: calcium ion binding1.42E-02
74GO:0004791: thioredoxin-disulfide reductase activity1.60E-02
75GO:0019901: protein kinase binding1.68E-02
76GO:0015385: sodium:proton antiporter activity1.94E-02
77GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor1.94E-02
78GO:0016791: phosphatase activity2.03E-02
79GO:0008483: transaminase activity2.11E-02
80GO:0016722: oxidoreductase activity, oxidizing metal ions2.11E-02
81GO:0005200: structural constituent of cytoskeleton2.11E-02
82GO:0016597: amino acid binding2.20E-02
83GO:0016168: chlorophyll binding2.39E-02
84GO:0008168: methyltransferase activity2.54E-02
85GO:0004721: phosphoprotein phosphatase activity2.58E-02
86GO:0008757: S-adenosylmethionine-dependent methyltransferase activity2.68E-02
87GO:0004693: cyclin-dependent protein serine/threonine kinase activity2.97E-02
88GO:0016614: oxidoreductase activity, acting on CH-OH group of donors3.08E-02
89GO:0003993: acid phosphatase activity3.39E-02
90GO:0042393: histone binding3.60E-02
91GO:0052689: carboxylic ester hydrolase activity3.62E-02
92GO:0004185: serine-type carboxypeptidase activity3.93E-02
93GO:0051537: 2 iron, 2 sulfur cluster binding4.16E-02
94GO:0043621: protein self-association4.16E-02
95GO:0005525: GTP binding4.17E-02
96GO:0003735: structural constituent of ribosome4.40E-02
97GO:0051287: NAD binding4.50E-02
RankGO TermAdjusted P value
1GO:0042579: microbody0.00E+00
2GO:0043235: receptor complex0.00E+00
3GO:0009507: chloroplast5.51E-28
4GO:0009570: chloroplast stroma2.12E-20
5GO:0009579: thylakoid1.79E-16
6GO:0009535: chloroplast thylakoid membrane2.13E-16
7GO:0009941: chloroplast envelope2.41E-13
8GO:0009543: chloroplast thylakoid lumen9.04E-11
9GO:0009534: chloroplast thylakoid7.21E-09
10GO:0009654: photosystem II oxygen evolving complex1.44E-08
11GO:0031977: thylakoid lumen8.38E-08
12GO:0048046: apoplast1.23E-06
13GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)4.54E-06
14GO:0019898: extrinsic component of membrane5.27E-06
15GO:0030095: chloroplast photosystem II2.08E-05
16GO:0031361: integral component of thylakoid membrane1.80E-04
17GO:0009344: nitrite reductase complex [NAD(P)H]1.80E-04
18GO:0016020: membrane2.25E-04
19GO:0010007: magnesium chelatase complex6.61E-04
20GO:0033281: TAT protein transport complex6.61E-04
21GO:0009317: acetyl-CoA carboxylase complex6.61E-04
22GO:0030658: transport vesicle membrane9.45E-04
23GO:0009517: PSII associated light-harvesting complex II1.25E-03
24GO:0009522: photosystem I1.47E-03
25GO:0009523: photosystem II1.57E-03
26GO:0010287: plastoglobule1.80E-03
27GO:0010319: stromule2.16E-03
28GO:0009295: nucleoid2.16E-03
29GO:0009501: amyloplast3.21E-03
30GO:0000307: cyclin-dependent protein kinase holoenzyme complex3.67E-03
31GO:0009539: photosystem II reaction center3.67E-03
32GO:0005763: mitochondrial small ribosomal subunit4.15E-03
33GO:0045298: tubulin complex4.15E-03
34GO:0016459: myosin complex5.18E-03
35GO:0005618: cell wall6.29E-03
36GO:0009536: plastid6.36E-03
37GO:0009508: plastid chromosome6.86E-03
38GO:0030076: light-harvesting complex8.08E-03
39GO:0042651: thylakoid membrane1.00E-02
40GO:0005840: ribosome1.72E-02
41GO:0022626: cytosolic ribosome2.13E-02
42GO:0030529: intracellular ribonucleoprotein complex2.30E-02
43GO:0019005: SCF ubiquitin ligase complex2.77E-02
44GO:0005643: nuclear pore2.77E-02
45GO:0031969: chloroplast membrane3.27E-02
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Gene type



Gene DE type