Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G54770

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006429: leucyl-tRNA aminoacylation0.00E+00
2GO:1905421: regulation of plant organ morphogenesis0.00E+00
3GO:0043488: regulation of mRNA stability0.00E+00
4GO:0000455: enzyme-directed rRNA pseudouridine synthesis0.00E+00
5GO:0030155: regulation of cell adhesion0.00E+00
6GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
7GO:0010422: regulation of brassinosteroid biosynthetic process0.00E+00
8GO:0090071: negative regulation of ribosome biogenesis0.00E+00
9GO:0031116: positive regulation of microtubule polymerization0.00E+00
10GO:0009157: deoxyribonucleoside monophosphate biosynthetic process0.00E+00
11GO:0000489: maturation of SSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)0.00E+00
12GO:0007638: mechanosensory behavior0.00E+00
13GO:1905177: tracheary element differentiation0.00E+00
14GO:0000488: maturation of LSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)0.00E+00
15GO:0097164: ammonium ion metabolic process0.00E+00
16GO:0006399: tRNA metabolic process0.00E+00
17GO:0015843: methylammonium transport0.00E+00
18GO:0009658: chloroplast organization7.80E-10
19GO:0042793: transcription from plastid promoter1.36E-05
20GO:0000373: Group II intron splicing9.62E-05
21GO:0009451: RNA modification1.10E-04
22GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway1.34E-04
23GO:0009828: plant-type cell wall loosening3.16E-04
24GO:0006747: FAD biosynthetic process6.45E-04
25GO:0006419: alanyl-tRNA aminoacylation6.45E-04
26GO:0000476: maturation of 4.5S rRNA6.45E-04
27GO:0000967: rRNA 5'-end processing6.45E-04
28GO:0070509: calcium ion import6.45E-04
29GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic6.45E-04
30GO:0010480: microsporocyte differentiation6.45E-04
31GO:0042371: vitamin K biosynthetic process6.45E-04
32GO:0006436: tryptophanyl-tRNA aminoacylation6.45E-04
33GO:1902458: positive regulation of stomatal opening6.45E-04
34GO:0048528: post-embryonic root development7.50E-04
35GO:0006400: tRNA modification7.50E-04
36GO:0046620: regulation of organ growth9.32E-04
37GO:0009231: riboflavin biosynthetic process9.32E-04
38GO:0009657: plastid organization1.13E-03
39GO:0009646: response to absence of light1.38E-03
40GO:0034470: ncRNA processing1.39E-03
41GO:0070981: L-asparagine biosynthetic process1.39E-03
42GO:0060359: response to ammonium ion1.39E-03
43GO:1902326: positive regulation of chlorophyll biosynthetic process1.39E-03
44GO:0042325: regulation of phosphorylation1.39E-03
45GO:0009220: pyrimidine ribonucleotide biosynthetic process1.39E-03
46GO:1904143: positive regulation of carotenoid biosynthetic process1.39E-03
47GO:0042550: photosystem I stabilization1.39E-03
48GO:0006529: asparagine biosynthetic process1.39E-03
49GO:1903426: regulation of reactive oxygen species biosynthetic process1.39E-03
50GO:0009790: embryo development1.58E-03
51GO:0009638: phototropism1.61E-03
52GO:0032502: developmental process1.80E-03
53GO:0006949: syncytium formation1.88E-03
54GO:0009664: plant-type cell wall organization1.92E-03
55GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic2.29E-03
56GO:0045910: negative regulation of DNA recombination2.29E-03
57GO:0048281: inflorescence morphogenesis2.29E-03
58GO:0051127: positive regulation of actin nucleation2.29E-03
59GO:0006954: inflammatory response2.29E-03
60GO:0010623: programmed cell death involved in cell development2.29E-03
61GO:0042780: tRNA 3'-end processing2.29E-03
62GO:0001578: microtubule bundle formation2.29E-03
63GO:0043157: response to cation stress2.29E-03
64GO:0045037: protein import into chloroplast stroma2.49E-03
65GO:0006468: protein phosphorylation2.60E-03
66GO:0010207: photosystem II assembly3.20E-03
67GO:0010020: chloroplast fission3.20E-03
68GO:0010411: xyloglucan metabolic process3.28E-03
69GO:0007231: osmosensory signaling pathway3.33E-03
70GO:0051639: actin filament network formation3.33E-03
71GO:0044211: CTP salvage3.33E-03
72GO:0019048: modulation by virus of host morphology or physiology3.33E-03
73GO:0015696: ammonium transport3.33E-03
74GO:0046739: transport of virus in multicellular host3.33E-03
75GO:2000904: regulation of starch metabolic process3.33E-03
76GO:0006164: purine nucleotide biosynthetic process3.33E-03
77GO:0043572: plastid fission3.33E-03
78GO:0031048: chromatin silencing by small RNA3.33E-03
79GO:0010148: transpiration3.33E-03
80GO:2001141: regulation of RNA biosynthetic process3.33E-03
81GO:0016556: mRNA modification3.33E-03
82GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly3.33E-03
83GO:1902476: chloride transmembrane transport3.33E-03
84GO:0070588: calcium ion transmembrane transport3.60E-03
85GO:0000160: phosphorelay signal transduction system3.98E-03
86GO:0009944: polarity specification of adaxial/abaxial axis4.46E-03
87GO:0005992: trehalose biosynthetic process4.46E-03
88GO:0051764: actin crosslink formation4.49E-03
89GO:0015846: polyamine transport4.49E-03
90GO:0051322: anaphase4.49E-03
91GO:0033500: carbohydrate homeostasis4.49E-03
92GO:0072488: ammonium transmembrane transport4.49E-03
93GO:0044205: 'de novo' UMP biosynthetic process4.49E-03
94GO:0051567: histone H3-K9 methylation4.49E-03
95GO:0010508: positive regulation of autophagy4.49E-03
96GO:0007020: microtubule nucleation4.49E-03
97GO:0044206: UMP salvage4.49E-03
98GO:0009165: nucleotide biosynthetic process4.49E-03
99GO:0009793: embryo development ending in seed dormancy4.68E-03
100GO:0006418: tRNA aminoacylation for protein translation4.92E-03
101GO:0016998: cell wall macromolecule catabolic process5.42E-03
102GO:0016123: xanthophyll biosynthetic process5.77E-03
103GO:0016131: brassinosteroid metabolic process5.77E-03
104GO:0010158: abaxial cell fate specification5.77E-03
105GO:0046785: microtubule polymerization5.77E-03
106GO:0032543: mitochondrial translation5.77E-03
107GO:0010236: plastoquinone biosynthetic process5.77E-03
108GO:0045038: protein import into chloroplast thylakoid membrane5.77E-03
109GO:1902183: regulation of shoot apical meristem development5.77E-03
110GO:0006730: one-carbon metabolic process5.94E-03
111GO:0009926: auxin polar transport7.02E-03
112GO:0009959: negative gravitropism7.17E-03
113GO:0006655: phosphatidylglycerol biosynthetic process7.17E-03
114GO:0006139: nucleobase-containing compound metabolic process7.17E-03
115GO:0016554: cytidine to uridine editing7.17E-03
116GO:0016458: gene silencing7.17E-03
117GO:0006206: pyrimidine nucleobase metabolic process7.17E-03
118GO:0018258: protein O-linked glycosylation via hydroxyproline7.17E-03
119GO:0010405: arabinogalactan protein metabolic process7.17E-03
120GO:0042546: cell wall biogenesis7.39E-03
121GO:0009789: positive regulation of abscisic acid-activated signaling pathway7.66E-03
122GO:0040008: regulation of growth7.92E-03
123GO:0009734: auxin-activated signaling pathway8.09E-03
124GO:0042372: phylloquinone biosynthetic process8.67E-03
125GO:0006458: 'de novo' protein folding8.67E-03
126GO:0017148: negative regulation of translation8.67E-03
127GO:0009942: longitudinal axis specification8.67E-03
128GO:0042026: protein refolding8.67E-03
129GO:0030488: tRNA methylation8.67E-03
130GO:1901259: chloroplast rRNA processing8.67E-03
131GO:0080086: stamen filament development8.67E-03
132GO:0009733: response to auxin1.01E-02
133GO:0006955: immune response1.03E-02
134GO:0009772: photosynthetic electron transport in photosystem II1.03E-02
135GO:0006821: chloride transport1.03E-02
136GO:0070370: cellular heat acclimation1.03E-02
137GO:0009736: cytokinin-activated signaling pathway1.03E-02
138GO:0010050: vegetative phase change1.03E-02
139GO:0048437: floral organ development1.03E-02
140GO:0010444: guard mother cell differentiation1.03E-02
141GO:0015693: magnesium ion transport1.03E-02
142GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process1.03E-02
143GO:0010103: stomatal complex morphogenesis1.03E-02
144GO:0009610: response to symbiotic fungus1.03E-02
145GO:0007166: cell surface receptor signaling pathway1.04E-02
146GO:0010583: response to cyclopentenone1.18E-02
147GO:0006402: mRNA catabolic process1.20E-02
148GO:0048564: photosystem I assembly1.20E-02
149GO:0001522: pseudouridine synthesis1.20E-02
150GO:0009850: auxin metabolic process1.20E-02
151GO:0009787: regulation of abscisic acid-activated signaling pathway1.20E-02
152GO:0019375: galactolipid biosynthetic process1.20E-02
153GO:0009704: de-etiolation1.20E-02
154GO:2000070: regulation of response to water deprivation1.20E-02
155GO:0042255: ribosome assembly1.20E-02
156GO:0006353: DNA-templated transcription, termination1.20E-02
157GO:0070413: trehalose metabolism in response to stress1.20E-02
158GO:0052543: callose deposition in cell wall1.20E-02
159GO:0009416: response to light stimulus1.27E-02
160GO:0001558: regulation of cell growth1.38E-02
161GO:0006002: fructose 6-phosphate metabolic process1.38E-02
162GO:0071482: cellular response to light stimulus1.38E-02
163GO:0010052: guard cell differentiation1.38E-02
164GO:0009827: plant-type cell wall modification1.38E-02
165GO:0010497: plasmodesmata-mediated intercellular transport1.38E-02
166GO:0032544: plastid translation1.38E-02
167GO:0007389: pattern specification process1.38E-02
168GO:0051607: defense response to virus1.52E-02
169GO:0009051: pentose-phosphate shunt, oxidative branch1.57E-02
170GO:2000024: regulation of leaf development1.57E-02
171GO:0006098: pentose-phosphate shunt1.57E-02
172GO:0000902: cell morphogenesis1.57E-02
173GO:0010027: thylakoid membrane organization1.61E-02
174GO:0042254: ribosome biogenesis1.70E-02
175GO:0009742: brassinosteroid mediated signaling pathway1.74E-02
176GO:0042761: very long-chain fatty acid biosynthetic process1.76E-02
177GO:1900865: chloroplast RNA modification1.76E-02
178GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway1.76E-02
179GO:0031425: chloroplast RNA processing1.76E-02
180GO:0006259: DNA metabolic process1.97E-02
181GO:0006535: cysteine biosynthetic process from serine1.97E-02
182GO:0030422: production of siRNA involved in RNA interference1.97E-02
183GO:0045036: protein targeting to chloroplast1.97E-02
184GO:0009641: shade avoidance1.97E-02
185GO:0006298: mismatch repair1.97E-02
186GO:0009684: indoleacetic acid biosynthetic process2.18E-02
187GO:0010015: root morphogenesis2.18E-02
188GO:0006265: DNA topological change2.18E-02
189GO:0009089: lysine biosynthetic process via diaminopimelate2.18E-02
190GO:0006816: calcium ion transport2.18E-02
191GO:0009773: photosynthetic electron transport in photosystem I2.18E-02
192GO:1903507: negative regulation of nucleic acid-templated transcription2.18E-02
193GO:0006352: DNA-templated transcription, initiation2.18E-02
194GO:0048229: gametophyte development2.18E-02
195GO:0006415: translational termination2.18E-02
196GO:0080167: response to karrikin2.28E-02
197GO:0016024: CDP-diacylglycerol biosynthetic process2.41E-02
198GO:0010582: floral meristem determinacy2.41E-02
199GO:0006094: gluconeogenesis2.64E-02
200GO:0009767: photosynthetic electron transport chain2.64E-02
201GO:2000012: regulation of auxin polar transport2.64E-02
202GO:0010628: positive regulation of gene expression2.64E-02
203GO:0006006: glucose metabolic process2.64E-02
204GO:0009785: blue light signaling pathway2.64E-02
205GO:0030036: actin cytoskeleton organization2.64E-02
206GO:0050826: response to freezing2.64E-02
207GO:0010075: regulation of meristem growth2.64E-02
208GO:0016310: phosphorylation2.74E-02
209GO:0006541: glutamine metabolic process2.87E-02
210GO:0009934: regulation of meristem structural organization2.87E-02
211GO:0006839: mitochondrial transport3.05E-02
212GO:0090351: seedling development3.12E-02
213GO:0010030: positive regulation of seed germination3.12E-02
214GO:0007623: circadian rhythm3.22E-02
215GO:0010025: wax biosynthetic process3.37E-02
216GO:0006071: glycerol metabolic process3.37E-02
217GO:0010114: response to red light3.45E-02
218GO:0019344: cysteine biosynthetic process3.63E-02
219GO:0009116: nucleoside metabolic process3.63E-02
220GO:0000027: ribosomal large subunit assembly3.63E-02
221GO:0051017: actin filament bundle assembly3.63E-02
222GO:0030150: protein import into mitochondrial matrix3.63E-02
223GO:0009965: leaf morphogenesis3.87E-02
224GO:0051302: regulation of cell division3.89E-02
225GO:0019953: sexual reproduction3.89E-02
226GO:0043622: cortical microtubule organization3.89E-02
227GO:0006825: copper ion transport3.89E-02
228GO:0031408: oxylipin biosynthetic process4.16E-02
229GO:0061077: chaperone-mediated protein folding4.16E-02
230GO:0006306: DNA methylation4.16E-02
231GO:0006810: transport4.29E-02
232GO:2000022: regulation of jasmonic acid mediated signaling pathway4.44E-02
233GO:0007005: mitochondrion organization4.44E-02
234GO:0031348: negative regulation of defense response4.44E-02
235GO:0080092: regulation of pollen tube growth4.44E-02
236GO:0006508: proteolysis4.59E-02
237GO:0006364: rRNA processing4.63E-02
238GO:0009831: plant-type cell wall modification involved in multidimensional cell growth4.72E-02
239GO:0010082: regulation of root meristem growth4.72E-02
240GO:0001944: vasculature development4.72E-02
241GO:0051603: proteolysis involved in cellular protein catabolic process4.79E-02
RankGO TermAdjusted P value
1GO:0019136: deoxynucleoside kinase activity0.00E+00
2GO:0003937: IMP cyclohydrolase activity0.00E+00
3GO:0043864: indoleacetamide hydrolase activity0.00E+00
4GO:0004588: orotate phosphoribosyltransferase activity0.00E+00
5GO:0004590: orotidine-5'-phosphate decarboxylase activity0.00E+00
6GO:0019808: polyamine binding0.00E+00
7GO:0004643: phosphoribosylaminoimidazolecarboxamide formyltransferase activity0.00E+00
8GO:0004823: leucine-tRNA ligase activity0.00E+00
9GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
10GO:0004056: argininosuccinate lyase activity0.00E+00
11GO:0004519: endonuclease activity2.16E-05
12GO:0003723: RNA binding1.24E-04
13GO:0016773: phosphotransferase activity, alcohol group as acceptor3.17E-04
14GO:0050139: nicotinate-N-glucosyltransferase activity6.45E-04
15GO:0046480: galactolipid galactosyltransferase activity6.45E-04
16GO:0005227: calcium activated cation channel activity6.45E-04
17GO:0042834: peptidoglycan binding6.45E-04
18GO:0052906: tRNA (guanine(37)-N(1))-methyltransferase activity6.45E-04
19GO:0004813: alanine-tRNA ligase activity6.45E-04
20GO:0004008: copper-exporting ATPase activity6.45E-04
21GO:0008835: diaminohydroxyphosphoribosylaminopyrimidine deaminase activity6.45E-04
22GO:0004071: aspartate-ammonia ligase activity6.45E-04
23GO:0046481: digalactosyldiacylglycerol synthase activity6.45E-04
24GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity6.45E-04
25GO:0004830: tryptophan-tRNA ligase activity6.45E-04
26GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity6.45E-04
27GO:0010285: L,L-diaminopimelate aminotransferase activity6.45E-04
28GO:0019843: rRNA binding1.20E-03
29GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity1.39E-03
30GO:0003919: FMN adenylyltransferase activity1.39E-03
31GO:0050017: L-3-cyanoalanine synthase activity1.39E-03
32GO:0010291: carotene beta-ring hydroxylase activity1.39E-03
33GO:0004066: asparagine synthase (glutamine-hydrolyzing) activity1.39E-03
34GO:0004326: tetrahydrofolylpolyglutamate synthase activity1.39E-03
35GO:0009977: proton motive force dependent protein transmembrane transporter activity1.39E-03
36GO:0016762: xyloglucan:xyloglucosyl transferase activity1.65E-03
37GO:0005525: GTP binding1.72E-03
38GO:0004675: transmembrane receptor protein serine/threonine kinase activity1.88E-03
39GO:0004805: trehalose-phosphatase activity1.88E-03
40GO:0000156: phosphorelay response regulator activity1.95E-03
41GO:0005089: Rho guanyl-nucleotide exchange factor activity2.17E-03
42GO:0046524: sucrose-phosphate synthase activity2.29E-03
43GO:0070330: aromatase activity2.29E-03
44GO:0017150: tRNA dihydrouridine synthase activity2.29E-03
45GO:0002161: aminoacyl-tRNA editing activity2.29E-03
46GO:0042781: 3'-tRNA processing endoribonuclease activity2.29E-03
47GO:0004557: alpha-galactosidase activity2.29E-03
48GO:0052692: raffinose alpha-galactosidase activity2.29E-03
49GO:0070180: large ribosomal subunit rRNA binding2.29E-03
50GO:0009982: pseudouridine synthase activity2.84E-03
51GO:0005262: calcium channel activity2.84E-03
52GO:0016798: hydrolase activity, acting on glycosyl bonds3.28E-03
53GO:0001872: (1->3)-beta-D-glucan binding3.33E-03
54GO:0035250: UDP-galactosyltransferase activity3.33E-03
55GO:0016656: monodehydroascorbate reductase (NADH) activity3.33E-03
56GO:0035197: siRNA binding3.33E-03
57GO:0043023: ribosomal large subunit binding3.33E-03
58GO:0004845: uracil phosphoribosyltransferase activity4.49E-03
59GO:0004345: glucose-6-phosphate dehydrogenase activity4.49E-03
60GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds4.49E-03
61GO:0016987: sigma factor activity4.49E-03
62GO:0005253: anion channel activity4.49E-03
63GO:0042277: peptide binding4.49E-03
64GO:0019199: transmembrane receptor protein kinase activity4.49E-03
65GO:0004659: prenyltransferase activity4.49E-03
66GO:0001053: plastid sigma factor activity4.49E-03
67GO:0016614: oxidoreductase activity, acting on CH-OH group of donors4.51E-03
68GO:0004176: ATP-dependent peptidase activity5.42E-03
69GO:0005275: amine transmembrane transporter activity5.77E-03
70GO:0018685: alkane 1-monooxygenase activity5.77E-03
71GO:0004040: amidase activity5.77E-03
72GO:0050660: flavin adenine dinucleotide binding5.96E-03
73GO:0030983: mismatched DNA binding7.17E-03
74GO:0004605: phosphatidate cytidylyltransferase activity7.17E-03
75GO:1990714: hydroxyproline O-galactosyltransferase activity7.17E-03
76GO:0004332: fructose-bisphosphate aldolase activity7.17E-03
77GO:0042578: phosphoric ester hydrolase activity7.17E-03
78GO:0008519: ammonium transmembrane transporter activity7.17E-03
79GO:0005247: voltage-gated chloride channel activity7.17E-03
80GO:0004812: aminoacyl-tRNA ligase activity7.66E-03
81GO:0004124: cysteine synthase activity8.67E-03
82GO:0008195: phosphatidate phosphatase activity8.67E-03
83GO:0004849: uridine kinase activity8.67E-03
84GO:0003730: mRNA 3'-UTR binding8.67E-03
85GO:0004656: procollagen-proline 4-dioxygenase activity8.67E-03
86GO:0003872: 6-phosphofructokinase activity1.03E-02
87GO:0043022: ribosome binding1.20E-02
88GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity1.38E-02
89GO:0005375: copper ion transmembrane transporter activity1.38E-02
90GO:0016301: kinase activity1.43E-02
91GO:0008237: metallopeptidase activity1.43E-02
92GO:0016597: amino acid binding1.52E-02
93GO:0008889: glycerophosphodiester phosphodiesterase activity1.57E-02
94GO:0003747: translation release factor activity1.57E-02
95GO:0009672: auxin:proton symporter activity1.76E-02
96GO:0004674: protein serine/threonine kinase activity1.92E-02
97GO:0004713: protein tyrosine kinase activity1.97E-02
98GO:0005524: ATP binding2.09E-02
99GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity2.11E-02
100GO:0044183: protein binding involved in protein folding2.18E-02
101GO:0004521: endoribonuclease activity2.41E-02
102GO:0000976: transcription regulatory region sequence-specific DNA binding2.41E-02
103GO:0000049: tRNA binding2.41E-02
104GO:0019888: protein phosphatase regulator activity2.64E-02
105GO:0004565: beta-galactosidase activity2.64E-02
106GO:0010329: auxin efflux transmembrane transporter activity2.64E-02
107GO:0015266: protein channel activity2.64E-02
108GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism2.64E-02
109GO:0004089: carbonate dehydratase activity2.64E-02
110GO:0015095: magnesium ion transmembrane transporter activity2.64E-02
111GO:0031072: heat shock protein binding2.64E-02
112GO:0003746: translation elongation factor activity2.67E-02
113GO:0102336: 3-oxo-arachidoyl-CoA synthase activity3.37E-02
114GO:0102337: 3-oxo-cerotoyl-CoA synthase activity3.37E-02
115GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity3.37E-02
116GO:0004185: serine-type carboxypeptidase activity3.45E-02
117GO:0003714: transcription corepressor activity3.63E-02
118GO:0031418: L-ascorbic acid binding3.63E-02
119GO:0043621: protein self-association3.73E-02
120GO:0015079: potassium ion transmembrane transporter activity3.89E-02
121GO:0005345: purine nucleobase transmembrane transporter activity3.89E-02
122GO:0003924: GTPase activity4.03E-02
123GO:0033612: receptor serine/threonine kinase binding4.16E-02
124GO:0008408: 3'-5' exonuclease activity4.16E-02
125GO:0004672: protein kinase activity4.29E-02
126GO:0009055: electron carrier activity4.46E-02
127GO:0030570: pectate lyase activity4.72E-02
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Gene type



Gene DE type