gene detail

Gene description

TAIR ID: AT5G54650

Short description: formin homology5

Pathogen responsiveness: 0.38

General responsiveness: -0.33

Orthologous

Rice: No orthologous gene

Maize:

GRMZM5G864498

Wheat:

TAAFFX.119976.1.A1_AT TAAFFX.92893.1.S1_AT

GO biological process

actin nucleation, endosperm development, actin filament polymerization, seed morphogenesis

GO cellular component

integral component of membrane, phragmoplast, plasma membrane, cytoplasm, cell wall

GO molecular function

unkown

Protein domain

Pfam	PF02181, Formin Homology 2 Domain
SMART	SM00498, FH2

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation

Regulator:
AT1G66600

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 1

click to view PPI network

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE26679_WT_GC  view
GSE56094_WT_HRPA-  view
GSE56094_WT_PSTDC3000  view
GSE45212_MED14_PSTDC3000_AVRRPT2  view
GSE26679_EDR1_GC  view

Differentially expressed condition

26 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE17382	Col, WT, Flg22 0 min	Col, WT, Flg22 60min	1.55	2.99E-02
GSE17464	Laer, JA+Flg22 0 h	Laer, JA+Flg22 1 h	1.75	1.20E-02
GSE17464	Laer, JA+Flg22 0 h	Laer, JA+Flg22 2 h	1.85	5.83E-03
GSE17464	Laer, control	Laer, Flg22 1 h	3.41	2.34E-07
GSE17464	Laer, control	Laer, Flg22 2 h	3.48	4.92E-07
GSE17464	Penta, control	Penta, Flg22 2 h	3.73	3.72E-08
GSE17464	Penta, control	Penta, Flg22 2 h	3.62	3.50E-07
GSE17500	Col, WT, control 0 h	Col, WT, PstDC3000 24 h	1.77	4.59E-06
GSE18978	Col, WT, control 24 h	Col, WT, PsmES4326 24 h	2.08	1.35E-05
GSE21920	Col, WT, mock	Col, WT, Pto HopZ1a 6 h	1.83	6.48E-07
GSE26679	Col, edr1, GC 0 h	Col, edr1, GC 18 h	1.59	1.28E-05
GSE26679	Col, edr1, GC 0 h	Col, edr1, GC 36 h	1.75	2.08E-06
GSE40544	Col, Sid2, control	Col, Sid2, PstDC3000 AvrRpt2	1.65	1.17E-02
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 4 h	1.52	8.64E-10
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 8 h	1.75	8.94E-11
GSE45214	Col, med16, PstDC3000 AvrRpt2 0 h	Col, med16, PstDC3000 AvrRpt2 4 h	1.86	7.18E-12
GSE52979	Col, WT, acetone	Col, WT, acetone flg22_2 h	1.74	2.64E-09
GSE52979	Col, WT, oxo_C14_HSL	Col, WT, oxo_C14_HSL flg22_2 h	2.04	2.85E-10
GSE5520	Col, WT, control 10 h	Col, WT, Cor- 10 h	2.62	3.46E-03
GSE56094	Col, WT, control 13 h	Col, WT, PstDC3000 13 h	1.72	3.27E-10
GSE5615	Col, WT, GST 4 h	Col, WT, GST+NPP1 4 h	1.67	5.63E-07
GSE5615	Col, WT, water 4 h	Col, WT, HrpZ 4 h	1.78	4.04E-08
GSE58954	Col, WT, Psm AvrRpt2 0 h	Col, WT, Psm AvrRpt2 6 h	2.94	5.80E-03
GSE6176	Col, WT, control 4 h	Col, WT, PstDC3000 AvrRpm1 4 h	1.98	1.58E-03
GSE9674	Ws-4, AtMYB30 ox, control	Ws-4, AtMYB30 ox, Xanthomonas strain Xcc147 6 h	2.39	8.59E-04
GSE9674	Ws-4, WT, control	Ws-4, WT, Xanthomonas strain Xcc147 6 h	2.46	8.27E-04