Gene: AT5G54270
     

Gene description


TAIR ID: AT5G54270

Short description: light-harvesting chlorophyll B-binding protein 3

Pathogen responsiveness: 0.52

General responsiveness: 2.96

Orthologous


Rice:

OS07G0562700   OS09G0296800  

Maize:

GRMZM2G057281  

Wheat: No orthologous gene

GO biological process


regulation of stomatal movement, protein-chromophore linkage, photosynthesis, light harvesting in photosystem I, response to high light intensity, light harvesting in photosystem II, response to abscisic acid, response to herbicide


GO cellular component


chloroplast thylakoid membrane, chloroplast thylakoid, integral component of membrane, thylakoid, plastoglobule, thylakoid membrane, light-harvesting complex, chloroplast envelope, chloroplast, photosystem II, photosystem I


GO molecular function


metal ion binding, pigment binding, chlorophyll binding, protein binding, structural molecule activity


Protein domain


PfamPF00504, Chlorophyll A-B binding protein

Metabolic pathway


Not involved in metabolic pathway


Transcriptional regulation


Regulator:
AT5G13790

Target:
none

Protein-protein interaction network


The number of partners (degree) is: 2

click to view PPI network

Differentially expressed condition


24 conditions



SeriesControlTreatmentLog2FCAdj. P value
GSE12856Col, WT, controlCol, WT, Bg h-2.139.36E-09
GSE12856Col, ataf1, controlCol, ataf1, Bg h-1.763.51E-08
GSE13739Col, WT, control 0 hCol, WT, G.orontii 6 h-2.743.84E-17
GSE13739Col, eds, control 0 hCol, eds, G.orontii 6 h-2.553.81E-16
GSE18978Col, WT, control 24 hCol, WT, PsmES4326 24 h-2.076.23E-05
GSE26679Col, WT, GC 0 hCol, WT, GC 18 h-2.012.40E-12
GSE26679Col, WT, GC 0 hCol, WT, GC 36 h-1.571.79E-10
GSE26679Col, edr1, GC 0 hCol, edr1, GC 18 h-1.811.37E-11
GSE45212Col, WT, PstDC3000 AvrRpt2 0 hCol, WT, PstDC3000 AvrRpt2 12 h-4.424.01E-12
GSE45212Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 12 h-6.492.19E-14
GSE45212Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 8 h-3.135.92E-10
GSE5520Col, WT, control 10 hCol, WT, Cor- 10 h-3.113.35E-03
GSE5520Col, WT, control 7 hCol, WT, PstDC3000 7 h-2.732.03E-03
GSE56094Col, WT, control 10 hCol, WT, PstDC3000 10 h-2.311.76E-05
GSE56094Col, WT, control 11 hCol, WT, PstDC3000 11 h-2.602.14E-06
GSE56094Col, WT, control 11 hCol, WT, hrpA- 11 h-1.841.23E-03
GSE56094Col, WT, control 12 hCol, WT, PstDC3000 12 h-2.978.15E-08
GSE56094Col, WT, control 12 hCol, WT, hrpA- 12 h-1.521.20E-02
GSE56094Col, WT, control 13 hCol, WT, PstDC3000 13 h-3.762.99E-11
GSE56094Col, WT, control 13 hCol, WT, hrpA- 13 h-1.531.23E-02
GSE56094Col, WT, control 4 hCol, WT, PstDC3000 4 h-2.017.01E-04
GSE56094Col, WT, control 9 hCol, WT, PstDC3000 9 h-2.488.10E-06
GSE56094Col, WT, control 9 hCol, WT, hrpA- 9 h-2.231.25E-04
GSE6176Col, WT, control 12 hCol, WT, PstDC3000 12 h-1.814.16E-04






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