co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G54270

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1903508: positive regulation of nucleic acid-templated transcription	0.00E+00
2	GO:0071474: cellular hyperosmotic response	0.00E+00
3	GO:1903428: positive regulation of reactive oxygen species biosynthetic process	0.00E+00
4	GO:0070584: mitochondrion morphogenesis	0.00E+00
5	GO:1901401: regulation of tetrapyrrole metabolic process	0.00E+00
6	GO:0010378: temperature compensation of the circadian clock	0.00E+00
7	GO:0090279: regulation of calcium ion import	0.00E+00
8	GO:0030644: cellular chloride ion homeostasis	0.00E+00
9	GO:0009768: photosynthesis, light harvesting in photosystem I	2.46E-21
10	GO:0015979: photosynthesis	3.22E-15
11	GO:0018298: protein-chromophore linkage	2.01E-13
12	GO:0009645: response to low light intensity stimulus	4.40E-11
13	GO:0010218: response to far red light	9.75E-10
14	GO:0010114: response to red light	4.32E-09
15	GO:0009416: response to light stimulus	6.37E-08
16	GO:0009637: response to blue light	6.58E-08
17	GO:0009644: response to high light intensity	1.92E-07
18	GO:0007623: circadian rhythm	3.42E-07
19	GO:0009769: photosynthesis, light harvesting in photosystem II	1.72E-06
20	GO:0009409: response to cold	6.05E-06
21	GO:0009765: photosynthesis, light harvesting	2.77E-05
22	GO:0010196: nonphotochemical quenching	1.22E-04
23	GO:0032958: inositol phosphate biosynthetic process	1.93E-04
24	GO:0015812: gamma-aminobutyric acid transport	1.93E-04
25	GO:0080167: response to karrikin	2.77E-04
26	GO:0015995: chlorophyll biosynthetic process	3.43E-04
27	GO:0051262: protein tetramerization	4.33E-04
28	GO:0006883: cellular sodium ion homeostasis	4.33E-04
29	GO:0051170: nuclear import	4.33E-04
30	GO:1902884: positive regulation of response to oxidative stress	4.33E-04
31	GO:0042542: response to hydrogen peroxide	6.97E-04
32	GO:0042256: mature ribosome assembly	7.06E-04
33	GO:1902448: positive regulation of shade avoidance	7.06E-04
34	GO:0006598: polyamine catabolic process	7.06E-04
35	GO:1901562: response to paraquat	7.06E-04
36	GO:0008643: carbohydrate transport	8.08E-04
37	GO:0048511: rhythmic process	9.35E-04
38	GO:0009269: response to desiccation	9.35E-04
39	GO:0050482: arachidonic acid secretion	1.01E-03
40	GO:0006020: inositol metabolic process	1.01E-03
41	GO:0044211: CTP salvage	1.01E-03
42	GO:0031936: negative regulation of chromatin silencing	1.01E-03
43	GO:0010017: red or far-red light signaling pathway	1.02E-03
44	GO:0009658: chloroplast organization	1.08E-03
45	GO:0000003: reproduction	1.34E-03
46	GO:2000306: positive regulation of photomorphogenesis	1.34E-03
47	GO:0010600: regulation of auxin biosynthetic process	1.34E-03
48	GO:1901002: positive regulation of response to salt stress	1.34E-03
49	GO:0044206: UMP salvage	1.34E-03
50	GO:0030104: water homeostasis	1.34E-03
51	GO:0048578: positive regulation of long-day photoperiodism, flowering	1.70E-03
52	GO:0043097: pyrimidine nucleoside salvage	1.70E-03
53	GO:0045962: positive regulation of development, heterochronic	2.10E-03
54	GO:0006206: pyrimidine nucleobase metabolic process	2.10E-03
55	GO:1901657: glycosyl compound metabolic process	2.11E-03
56	GO:0009861: jasmonic acid and ethylene-dependent systemic resistance	2.52E-03
57	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	2.52E-03
58	GO:0071470: cellular response to osmotic stress	2.52E-03
59	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	2.52E-03
60	GO:0006355: regulation of transcription, DNA-templated	2.81E-03
61	GO:0010161: red light signaling pathway	2.96E-03
62	GO:1900056: negative regulation of leaf senescence	2.96E-03
63	GO:0080111: DNA demethylation	2.96E-03
64	GO:0010078: maintenance of root meristem identity	3.43E-03
65	GO:0009704: de-etiolation	3.43E-03
66	GO:0006644: phospholipid metabolic process	3.43E-03
67	GO:0010928: regulation of auxin mediated signaling pathway	3.43E-03
68	GO:0042255: ribosome assembly	3.43E-03
69	GO:0000160: phosphorelay signal transduction system	3.65E-03
70	GO:0010099: regulation of photomorphogenesis	3.93E-03
71	GO:0006075: (1->3)-beta-D-glucan biosynthetic process	3.93E-03
72	GO:0009827: plant-type cell wall modification	3.93E-03
73	GO:0007186: G-protein coupled receptor signaling pathway	3.93E-03
74	GO:0006351: transcription, DNA-templated	4.17E-03
75	GO:0055114: oxidation-reduction process	4.32E-03
76	GO:0090333: regulation of stomatal closure	4.44E-03
77	GO:0030042: actin filament depolymerization	4.99E-03
78	GO:0048354: mucilage biosynthetic process involved in seed coat development	4.99E-03
79	GO:0010380: regulation of chlorophyll biosynthetic process	4.99E-03
80	GO:0009641: shade avoidance	5.55E-03
81	GO:0006949: syncytium formation	5.55E-03
82	GO:0010162: seed dormancy process	5.55E-03
83	GO:0009970: cellular response to sulfate starvation	5.55E-03
84	GO:0006995: cellular response to nitrogen starvation	5.55E-03
85	GO:0055062: phosphate ion homeostasis	5.55E-03
86	GO:0009735: response to cytokinin	5.61E-03
87	GO:0009640: photomorphogenesis	5.66E-03
88	GO:0018119: peptidyl-cysteine S-nitrosylation	6.13E-03
89	GO:0030148: sphingolipid biosynthetic process	6.13E-03
90	GO:0046856: phosphatidylinositol dephosphorylation	6.13E-03
91	GO:0005983: starch catabolic process	6.73E-03
92	GO:0006812: cation transport	7.11E-03
93	GO:0042538: hyperosmotic salinity response	7.11E-03
94	GO:0050826: response to freezing	7.36E-03
95	GO:0018107: peptidyl-threonine phosphorylation	7.36E-03
96	GO:0009718: anthocyanin-containing compound biosynthetic process	7.36E-03
97	GO:0009767: photosynthetic electron transport chain	7.36E-03
98	GO:0009585: red, far-red light phototransduction	7.63E-03
99	GO:0007015: actin filament organization	8.01E-03
100	GO:0009266: response to temperature stimulus	8.01E-03
101	GO:0010207: photosystem II assembly	8.01E-03
102	GO:0090351: seedling development	8.67E-03
103	GO:0019853: L-ascorbic acid biosynthetic process	8.67E-03
104	GO:0055085: transmembrane transport	9.23E-03
105	GO:0006874: cellular calcium ion homeostasis	1.08E-02
106	GO:0003333: amino acid transmembrane transport	1.15E-02
107	GO:0010431: seed maturation	1.15E-02
108	GO:0006629: lipid metabolic process	1.24E-02
109	GO:0006012: galactose metabolic process	1.31E-02
110	GO:0071215: cellular response to abscisic acid stimulus	1.31E-02
111	GO:0045492: xylan biosynthetic process	1.39E-02
112	GO:0070417: cellular response to cold	1.47E-02
113	GO:0008360: regulation of cell shape	1.63E-02
114	GO:0006814: sodium ion transport	1.72E-02
115	GO:0042752: regulation of circadian rhythm	1.72E-02
116	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	1.90E-02
117	GO:0000302: response to reactive oxygen species	1.90E-02
118	GO:0009737: response to abscisic acid	1.97E-02
119	GO:0032502: developmental process	1.99E-02
120	GO:0009828: plant-type cell wall loosening	2.18E-02
121	GO:0010286: heat acclimation	2.27E-02
122	GO:0016579: protein deubiquitination	2.37E-02
123	GO:0016126: sterol biosynthetic process	2.47E-02
124	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	2.57E-02
125	GO:0010029: regulation of seed germination	2.57E-02
126	GO:0048573: photoperiodism, flowering	2.77E-02
127	GO:0006950: response to stress	2.77E-02
128	GO:0006888: ER to Golgi vesicle-mediated transport	2.77E-02
129	GO:0009817: defense response to fungus, incompatible interaction	2.98E-02
130	GO:0048481: plant ovule development	2.98E-02
131	GO:0045893: positive regulation of transcription, DNA-templated	3.03E-02
132	GO:0006970: response to osmotic stress	3.15E-02
133	GO:0006811: ion transport	3.20E-02
134	GO:0006810: transport	3.29E-02
135	GO:0009910: negative regulation of flower development	3.31E-02
136	GO:0009631: cold acclimation	3.31E-02
137	GO:0010119: regulation of stomatal movement	3.31E-02
138	GO:0009723: response to ethylene	3.38E-02
139	GO:0005975: carbohydrate metabolic process	3.45E-02
140	GO:0046686: response to cadmium ion	3.58E-02
141	GO:0034599: cellular response to oxidative stress	3.64E-02
142	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	3.74E-02
143	GO:0006839: mitochondrial transport	3.87E-02
144	GO:0044550: secondary metabolite biosynthetic process	3.93E-02
145	GO:0009651: response to salt stress	4.19E-02
146	GO:0051707: response to other organism	4.23E-02
147	GO:0045892: negative regulation of transcription, DNA-templated	4.39E-02
148	GO:0006886: intracellular protein transport	4.46E-02
149	GO:0009965: leaf morphogenesis	4.59E-02
150	GO:0009664: plant-type cell wall organization	4.96E-02

Rank	GO Term	Adjusted P value
1	GO:0015038: glutathione disulfide oxidoreductase activity	0.00E+00
2	GO:0080081: 4-methylumbelliferyl-beta-D-glucopyranoside beta-glucosidase activity	0.00E+00
3	GO:0048529: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity	0.00E+00
4	GO:0047668: amygdalin beta-glucosidase activity	0.00E+00
5	GO:0019912: cyclin-dependent protein kinase activating kinase activity	0.00E+00
6	GO:0080083: beta-gentiobiose beta-glucosidase activity	0.00E+00
7	GO:0030504: inorganic diphosphate transmembrane transporter activity	0.00E+00
8	GO:0010349: L-galactose dehydrogenase activity	0.00E+00
9	GO:0090711: FMN hydrolase activity	0.00E+00
10	GO:0004567: beta-mannosidase activity	0.00E+00
11	GO:0080082: esculin beta-glucosidase activity	0.00E+00
12	GO:0031409: pigment binding	1.45E-19
13	GO:0016168: chlorophyll binding	8.66E-16
14	GO:0033857: diphosphoinositol-pentakisphosphate kinase activity	1.93E-04
15	GO:0016901: oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor	1.93E-04
16	GO:0000829: inositol heptakisphosphate kinase activity	1.93E-04
17	GO:0005227: calcium activated cation channel activity	1.93E-04
18	GO:0080079: cellobiose glucosidase activity	1.93E-04
19	GO:0000828: inositol hexakisphosphate kinase activity	1.93E-04
20	GO:0052631: sphingolipid delta-8 desaturase activity	1.93E-04
21	GO:0015185: gamma-aminobutyric acid transmembrane transporter activity	1.93E-04
22	GO:0046872: metal ion binding	3.58E-04
23	GO:0015180: L-alanine transmembrane transporter activity	4.33E-04
24	GO:0016630: protochlorophyllide reductase activity	4.33E-04
25	GO:0005515: protein binding	6.97E-04
26	GO:0004096: catalase activity	7.06E-04
27	GO:0046592: polyamine oxidase activity	7.06E-04
28	GO:0015189: L-lysine transmembrane transporter activity	1.01E-03
29	GO:0015181: arginine transmembrane transporter activity	1.01E-03
30	GO:0004845: uracil phosphoribosyltransferase activity	1.34E-03
31	GO:0005313: L-glutamate transmembrane transporter activity	1.34E-03
32	GO:0004506: squalene monooxygenase activity	1.34E-03
33	GO:0004930: G-protein coupled receptor activity	1.34E-03
34	GO:0004623: phospholipase A2 activity	1.70E-03
35	GO:0016702: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	1.70E-03
36	GO:0015562: efflux transmembrane transporter activity	2.10E-03
37	GO:0004556: alpha-amylase activity	2.10E-03
38	GO:0000156: phosphorelay response regulator activity	2.11E-03
39	GO:0005261: cation channel activity	2.52E-03
40	GO:0004849: uridine kinase activity	2.52E-03
41	GO:0015297: antiporter activity	3.10E-03
42	GO:0102483: scopolin beta-glucosidase activity	3.14E-03
43	GO:0004564: beta-fructofuranosidase activity	3.43E-03
44	GO:0004033: aldo-keto reductase (NADP) activity	3.43E-03
45	GO:0008353: RNA polymerase II carboxy-terminal domain kinase activity	3.93E-03
46	GO:0003843: 1,3-beta-D-glucan synthase activity	3.93E-03
47	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	4.44E-03
48	GO:0000989: transcription factor activity, transcription factor binding	4.44E-03
49	GO:0008422: beta-glucosidase activity	4.80E-03
50	GO:0004575: sucrose alpha-glucosidase activity	4.99E-03
51	GO:0047372: acylglycerol lipase activity	6.13E-03
52	GO:0005215: transporter activity	6.34E-03
53	GO:0016787: hydrolase activity	6.54E-03
54	GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity	6.73E-03
55	GO:0005315: inorganic phosphate transmembrane transporter activity	7.36E-03
56	GO:0004565: beta-galactosidase activity	7.36E-03
57	GO:0004022: alcohol dehydrogenase (NAD) activity	7.36E-03
58	GO:0003700: transcription factor activity, sequence-specific DNA binding	7.53E-03
59	GO:0008131: primary amine oxidase activity	8.01E-03
60	GO:0004190: aspartic-type endopeptidase activity	8.67E-03
61	GO:0005217: intracellular ligand-gated ion channel activity	8.67E-03
62	GO:0003712: transcription cofactor activity	8.67E-03
63	GO:0004970: ionotropic glutamate receptor activity	8.67E-03
64	GO:0005216: ion channel activity	1.08E-02
65	GO:0008324: cation transmembrane transporter activity	1.08E-02
66	GO:0019706: protein-cysteine S-palmitoyltransferase activity	1.15E-02
67	GO:0036459: thiol-dependent ubiquitinyl hydrolase activity	1.15E-02
68	GO:0004707: MAP kinase activity	1.15E-02
69	GO:0003677: DNA binding	1.30E-02
70	GO:0003727: single-stranded RNA binding	1.39E-02
71	GO:0008514: organic anion transmembrane transporter activity	1.39E-02
72	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	1.40E-02
73	GO:0005351: sugar:proton symporter activity	1.84E-02
74	GO:0048038: quinone binding	1.90E-02
75	GO:0004843: thiol-dependent ubiquitin-specific protease activity	1.90E-02
76	GO:0008168: methyltransferase activity	2.81E-02
77	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	3.20E-02
78	GO:0050897: cobalt ion binding	3.31E-02
79	GO:0016301: kinase activity	3.47E-02
80	GO:0008233: peptidase activity	3.56E-02
81	GO:0004497: monooxygenase activity	3.62E-02
82	GO:0003993: acid phosphatase activity	3.64E-02
83	GO:0020037: heme binding	3.65E-02
84	GO:0042393: histone binding	3.87E-02
85	GO:0051537: 2 iron, 2 sulfur cluster binding	4.47E-02
86	GO:0043621: protein self-association	4.47E-02
87	GO:0008270: zinc ion binding	4.50E-02
88	GO:0015293: symporter activity	4.59E-02
89	GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	4.66E-02

Rank	GO Term	Adjusted P value
1	GO:0009783: photosystem II antenna complex	0.00E+00
2	GO:0009522: photosystem I	3.31E-17
3	GO:0010287: plastoglobule	1.95E-15
4	GO:0030076: light-harvesting complex	3.38E-15
5	GO:0009579: thylakoid	1.74E-13
6	GO:0009534: chloroplast thylakoid	1.87E-13
7	GO:0009535: chloroplast thylakoid membrane	1.39E-12
8	GO:0009941: chloroplast envelope	6.36E-12
9	GO:0009517: PSII associated light-harvesting complex II	1.34E-07
10	GO:0009523: photosystem II	1.59E-07
11	GO:0016021: integral component of membrane	4.80E-07
12	GO:0009507: chloroplast	1.86E-05
13	GO:0016020: membrane	6.20E-05
14	GO:0009538: photosystem I reaction center	1.56E-04
15	GO:0042651: thylakoid membrane	8.55E-04
16	GO:0009898: cytoplasmic side of plasma membrane	1.34E-03
17	GO:0032586: protein storage vacuole membrane	1.34E-03
18	GO:0030660: Golgi-associated vesicle membrane	1.34E-03
19	GO:0071556: integral component of lumenal side of endoplasmic reticulum membrane	1.34E-03
20	GO:0030127: COPII vesicle coat	2.10E-03
21	GO:0009533: chloroplast stromal thylakoid	2.96E-03
22	GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane	3.43E-03
23	GO:0000326: protein storage vacuole	3.93E-03
24	GO:0000148: 1,3-beta-D-glucan synthase complex	3.93E-03
25	GO:0010494: cytoplasmic stress granule	4.44E-03
26	GO:0005765: lysosomal membrane	6.13E-03
27	GO:0031966: mitochondrial membrane	7.11E-03
28	GO:0030095: chloroplast photosystem II	8.01E-03
29	GO:0009654: photosystem II oxygen evolving complex	1.08E-02
30	GO:0031410: cytoplasmic vesicle	1.23E-02
31	GO:0015629: actin cytoskeleton	1.31E-02
32	GO:0019898: extrinsic component of membrane	1.81E-02
33	GO:0000932: P-body	2.47E-02
34	GO:0009707: chloroplast outer membrane	2.98E-02
35	GO:0005777: peroxisome	3.03E-02
36	GO:0031977: thylakoid lumen	3.99E-02