gene detail

Gene description

TAIR ID: AT5G53550

Short description: YELLOW STRIPE like 3

Pathogen responsiveness: -0.03

General responsiveness: -0.67

Orthologous

Rice: No orthologous gene

Maize:

GRMZM2G051179

Wheat: No orthologous gene

GO biological process

seed development, ion transport, iron ion homeostasis, oligopeptide transport, transmembrane transport, response to nematode, response to iron ion, developmental process involved in reproduction

GO cellular component

cytoplasm, integral component of membrane, plasma membrane

GO molecular function

iron-nicotianamine transmembrane transporter activity, oligopeptide transporter activity

Protein domain

Pfam	PF03169, OPT oligopeptide transporter protein

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation

Regulator:
AT3G24050, AT4G34680, AT2G45050, AT1G24260, AT3G60530, AT4G36990

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 9 (Top20%)

click to view PPI network

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE26679_WT_GC  view
GSE13739_WT_GO  view
GSE5686_WT_GO  view
GSE45212_MED14_PSTDC3000_AVRRPT2  view
GSE26679_EDR1_GC  view

Differentially expressed condition

16 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE11807	Col, WT, water 4 h	Col, WT, Flg22 4 h	3.08	9.07E-03
GSE16472	Col, WT, Flg22 0 min	Col, WT, Flg22 60min	2.62	4.95E-02
GSE18329	Col, wrky72_1, control	Col, wrky72_1, Hpa noco2 96 h	1.88	6.48E-11
GSE18329	Col, wrky72_1, control	Col, wrky72_2, Hpa noco2 96 h	1.77	1.88E-10
GSE26679	Col, WT, GC 0 h	Col, WT, GC 18 h	2.16	2.53E-09
GSE26679	Col, WT, GC 0 h	Col, WT, GC 36 h	1.75	7.91E-08
GSE26679	Col, edr1, GC 0 h	Col, edr1, GC 18 h	1.81	4.56E-08
GSE26679	Col, edr1, GC 0 h	Col, edr1, GC 36 h	2.15	1.37E-09
GSE40544	Col, WT, control	Col, WT, PstDC3000 AvrRpt2	1.72	2.21E-03
GSE40544	Col, WT, control	Col, WT, PstDC3000 EV	1.62	3.46E-03
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 12 h	2.08	2.34E-14
GSE52979	Col, WT, acetone	Col, WT, acetone flg22_2 h	1.73	7.12E-06
GSE52979	Col, WT, oxo_C14_HSL	Col, WT, oxo_C14_HSL flg22_2 h	1.78	4.24E-06
GSE5520	Col, WT, control 7 h	Col, WT, PstDC3000 7 h	-1.60	2.07E-02
GSE5615	Col, WT, water 4 h	Col, WT, HrpZ 4 h	1.55	3.34E-05
GSE6556	Col, gh3.5, control	Col, gh3.5, PstDC3000 AvrRpt2 48 h	2.33	3.24E-05