Gene: AT5G53550

Gene description

TAIR ID: AT5G53550

Short description: YELLOW STRIPE like 3

Pathogen responsiveness: -0.03

General responsiveness: -0.67


Rice: No orthologous gene


Wheat: No orthologous gene

GO biological process

seed development, ion transport, iron ion homeostasis, oligopeptide transport, transmembrane transport, response to nematode, response to iron ion, developmental process involved in reproduction

GO cellular component

cytoplasm, integral component of membrane, plasma membrane

GO molecular function

iron-nicotianamine transmembrane transporter activity, oligopeptide transporter activity

Protein domain

PfamPF03169, OPT oligopeptide transporter protein

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation

AT3G24050, AT4G34680, AT2G45050, AT1G24260, AT3G60530, AT4G36990


Protein-protein interaction network

The number of partners (degree) is: 9 (Top20%)

click to view PPI network

Differentially expressed condition

16 conditions

SeriesControlTreatmentLog2FCAdj. P value
GSE11807Col, WT, water 4 hCol, WT, Flg22 4 h3.089.07E-03
GSE16472Col, WT, Flg22 0 minCol, WT, Flg22 60min2.624.95E-02
GSE18329Col, wrky72_1, controlCol, wrky72_1, Hpa noco2 96 h1.886.48E-11
GSE18329Col, wrky72_1, controlCol, wrky72_2, Hpa noco2 96 h1.771.88E-10
GSE26679Col, WT, GC 0 hCol, WT, GC 18 h2.162.53E-09
GSE26679Col, WT, GC 0 hCol, WT, GC 36 h1.757.91E-08
GSE26679Col, edr1, GC 0 hCol, edr1, GC 18 h1.814.56E-08
GSE26679Col, edr1, GC 0 hCol, edr1, GC 36 h2.151.37E-09
GSE40544Col, WT, controlCol, WT, PstDC3000 AvrRpt21.722.21E-03
GSE40544Col, WT, controlCol, WT, PstDC3000 EV1.623.46E-03
GSE45212Col, WT, PstDC3000 AvrRpt2 0 hCol, WT, PstDC3000 AvrRpt2 12 h2.082.34E-14
GSE52979Col, WT, acetoneCol, WT, acetone flg22_2 h1.737.12E-06
GSE52979Col, WT, oxo_C14_HSLCol, WT, oxo_C14_HSL flg22_2 h1.784.24E-06
GSE5520Col, WT, control 7 hCol, WT, PstDC3000 7 h-1.602.07E-02
GSE5615Col, WT, water 4 hCol, WT, HrpZ 4 h1.553.34E-05
GSE6556Col, gh3.5, controlCol, gh3.5, PstDC3000 AvrRpt2 48 h2.333.24E-05

Copyright © 2017 Ziding Zhang's Lab - China Agricultural University. All Rights Reserved.