gene detail

Gene description

TAIR ID: AT5G53490

Short description: Tetratricopeptide repeat (TPR)-like superfamily protein

Pathogen responsiveness: 0.55

General responsiveness: 2.56

Orthologous

Rice:

OS10G0502000

Maize:

GRMZM2G436710

Wheat: No orthologous gene

GO biological process

biological_process

GO cellular component

thylakoid, chloroplast, chloroplast thylakoid membrane, chloroplast stroma, chloroplast thylakoid lumen, thylakoid lumen, integral component of membrane, chloroplast thylakoid, extracellular region

GO molecular function

protein binding

Protein domain

Pfam	PF13599, Pentapeptide repeats (9 copies)

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation

Regulator:
AT4G18770

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 2

click to view PPI network

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE26679_WT_GC  view
GSE56094_WT_HRPA-  view
GSE13739_WT_GO  view
GSE13739_EDS16_GO  view
GSE5686_WT_GO  view
GSE56094_WT_PSTDC3000  view
GSE45212_MED14_PSTDC3000_AVRRPT2  view

Differentially expressed condition

33 conditions

Show entries

Search:

Series	Control	Treatment	Log₂FC	Adj. P value
GSE56094	Col, WT, control 7 h	Col, WT, hrpA- 7 h	-1.55	3.69E-05
GSE12856	Col, ataf1, control	Col, ataf1, Bg h	-1.56	4.01E-07
GSE56094	Col, WT, control 6 h	Col, WT, PstDC3000 6 h	-1.57	2.07E-05
GSE17464	Laer, control	Laer, Flg22 2 h	-1.59	5.14E-03
GSE40544	Col, WT, control	Col, WT, PstDC3000 EV	-1.61	1.89E-06
GSE56094	Col, WT, control 11 h	Col, WT, hrpA- 11 h	-1.65	4.90E-06
GSE56094	Col, WT, control 4 h	Col, WT, PstDC3000 4 h	-1.65	1.22E-05
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 8 h	-1.79	4.07E-13
GSE56094	Col, WT, control 9 h	Col, WT, hrpA- 9 h	-1.81	1.16E-06
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 12 h	-1.83	3.44E-13

Showing 1 to 10 of 33 entries

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