co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G53490

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0042493: response to drug	0.00E+00
2	GO:0006399: tRNA metabolic process	0.00E+00
3	GO:0002184: cytoplasmic translational termination	0.00E+00
4	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
5	GO:0090071: negative regulation of ribosome biogenesis	0.00E+00
6	GO:0090470: shoot organ boundary specification	0.00E+00
7	GO:0015805: S-adenosyl-L-methionine transport	0.00E+00
8	GO:0015979: photosynthesis	1.29E-10
9	GO:0009773: photosynthetic electron transport in photosystem I	1.04E-08
10	GO:0032544: plastid translation	1.57E-07
11	GO:0010027: thylakoid membrane organization	3.22E-06
12	GO:0010196: nonphotochemical quenching	5.63E-06
13	GO:0090391: granum assembly	1.55E-05
14	GO:0016024: CDP-diacylglycerol biosynthetic process	4.75E-05
15	GO:0009735: response to cytokinin	5.91E-05
16	GO:0015995: chlorophyll biosynthetic process	8.53E-05
17	GO:0006412: translation	8.82E-05
18	GO:0045038: protein import into chloroplast thylakoid membrane	9.74E-05
19	GO:0042254: ribosome biogenesis	1.23E-04
20	GO:0006655: phosphatidylglycerol biosynthetic process	1.41E-04
21	GO:1901259: chloroplast rRNA processing	1.93E-04
22	GO:0009772: photosynthetic electron transport in photosystem II	2.51E-04
23	GO:0042335: cuticle development	2.82E-04
24	GO:1904964: positive regulation of phytol biosynthetic process	3.09E-04
25	GO:0042759: long-chain fatty acid biosynthetic process	3.09E-04
26	GO:0080051: cutin transport	3.09E-04
27	GO:0042371: vitamin K biosynthetic process	3.09E-04
28	GO:1902458: positive regulation of stomatal opening	3.09E-04
29	GO:0034337: RNA folding	3.09E-04
30	GO:0071588: hydrogen peroxide mediated signaling pathway	3.09E-04
31	GO:1904966: positive regulation of vitamin E biosynthetic process	3.09E-04
32	GO:0048564: photosystem I assembly	3.17E-04
33	GO:0009658: chloroplast organization	6.51E-04
34	GO:0001736: establishment of planar polarity	6.76E-04
35	GO:1903426: regulation of reactive oxygen species biosynthetic process	6.76E-04
36	GO:0030388: fructose 1,6-bisphosphate metabolic process	6.76E-04
37	GO:1902326: positive regulation of chlorophyll biosynthetic process	6.76E-04
38	GO:0015908: fatty acid transport	6.76E-04
39	GO:0010115: regulation of abscisic acid biosynthetic process	6.76E-04
40	GO:0034755: iron ion transmembrane transport	6.76E-04
41	GO:0009750: response to fructose	7.44E-04
42	GO:0010207: photosystem II assembly	1.08E-03
43	GO:0006000: fructose metabolic process	1.10E-03
44	GO:0046168: glycerol-3-phosphate catabolic process	1.10E-03
45	GO:0006013: mannose metabolic process	1.10E-03
46	GO:0006518: peptide metabolic process	1.10E-03
47	GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition	1.10E-03
48	GO:0034599: cellular response to oxidative stress	1.31E-03
49	GO:0006986: response to unfolded protein	1.57E-03
50	GO:2001141: regulation of RNA biosynthetic process	1.57E-03
51	GO:0009413: response to flooding	1.57E-03
52	GO:0010371: regulation of gibberellin biosynthetic process	1.57E-03
53	GO:0051085: chaperone mediated protein folding requiring cofactor	1.57E-03
54	GO:0009152: purine ribonucleotide biosynthetic process	1.57E-03
55	GO:0046653: tetrahydrofolate metabolic process	1.57E-03
56	GO:0010239: chloroplast mRNA processing	1.57E-03
57	GO:0006072: glycerol-3-phosphate metabolic process	1.57E-03
58	GO:0009650: UV protection	1.57E-03
59	GO:1901332: negative regulation of lateral root development	1.57E-03
60	GO:0016042: lipid catabolic process	1.78E-03
61	GO:0010222: stem vascular tissue pattern formation	2.11E-03
62	GO:0045727: positive regulation of translation	2.11E-03
63	GO:0015994: chlorophyll metabolic process	2.11E-03
64	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	2.15E-03
65	GO:0009306: protein secretion	2.33E-03
66	GO:0006564: L-serine biosynthetic process	2.69E-03
67	GO:0010236: plastoquinone biosynthetic process	2.69E-03
68	GO:0000413: protein peptidyl-prolyl isomerization	2.73E-03
69	GO:0006561: proline biosynthetic process	3.32E-03
70	GO:0042549: photosystem II stabilization	3.32E-03
71	GO:0000470: maturation of LSU-rRNA	3.32E-03
72	GO:0000302: response to reactive oxygen species	3.63E-03
73	GO:0010019: chloroplast-nucleus signaling pathway	4.00E-03
74	GO:0042372: phylloquinone biosynthetic process	4.00E-03
75	GO:0017148: negative regulation of translation	4.00E-03
76	GO:0048280: vesicle fusion with Golgi apparatus	4.00E-03
77	GO:0009828: plant-type cell wall loosening	4.40E-03
78	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	4.72E-03
79	GO:0010444: guard mother cell differentiation	4.72E-03
80	GO:0006400: tRNA modification	4.72E-03
81	GO:2000070: regulation of response to water deprivation	5.48E-03
82	GO:0010492: maintenance of shoot apical meristem identity	5.48E-03
83	GO:0045292: mRNA cis splicing, via spliceosome	5.48E-03
84	GO:0006353: DNA-templated transcription, termination	5.48E-03
85	GO:0006605: protein targeting	5.48E-03
86	GO:0009627: systemic acquired resistance	5.86E-03
87	GO:0042744: hydrogen peroxide catabolic process	6.14E-03
88	GO:0006002: fructose 6-phosphate metabolic process	6.28E-03
89	GO:0071482: cellular response to light stimulus	6.28E-03
90	GO:0000373: Group II intron splicing	7.12E-03
91	GO:0009245: lipid A biosynthetic process	7.12E-03
92	GO:0010206: photosystem II repair	7.12E-03
93	GO:0048507: meristem development	7.12E-03
94	GO:0010311: lateral root formation	7.20E-03
95	GO:0010205: photoinhibition	8.01E-03
96	GO:0009638: phototropism	8.01E-03
97	GO:0009451: RNA modification	8.08E-03
98	GO:0009688: abscisic acid biosynthetic process	8.92E-03
99	GO:0048829: root cap development	8.92E-03
100	GO:0006949: syncytium formation	8.92E-03
101	GO:0006896: Golgi to vacuole transport	8.92E-03
102	GO:0048765: root hair cell differentiation	9.88E-03
103	GO:0046856: phosphatidylinositol dephosphorylation	9.88E-03
104	GO:0008285: negative regulation of cell proliferation	9.88E-03
105	GO:0043085: positive regulation of catalytic activity	9.88E-03
106	GO:0006879: cellular iron ion homeostasis	9.88E-03
107	GO:0006352: DNA-templated transcription, initiation	9.88E-03
108	GO:0030001: metal ion transport	9.92E-03
109	GO:0005983: starch catabolic process	1.09E-02
110	GO:0010114: response to red light	1.12E-02
111	GO:0050826: response to freezing	1.19E-02
112	GO:0006094: gluconeogenesis	1.19E-02
113	GO:0005986: sucrose biosynthetic process	1.19E-02
114	GO:0010588: cotyledon vascular tissue pattern formation	1.19E-02
115	GO:0009785: blue light signaling pathway	1.19E-02
116	GO:0010628: positive regulation of gene expression	1.19E-02
117	GO:0006006: glucose metabolic process	1.19E-02
118	GO:0010143: cutin biosynthetic process	1.30E-02
119	GO:0019253: reductive pentose-phosphate cycle	1.30E-02
120	GO:0090351: seedling development	1.40E-02
121	GO:0071732: cellular response to nitric oxide	1.40E-02
122	GO:0009664: plant-type cell wall organization	1.41E-02
123	GO:0006833: water transport	1.52E-02
124	GO:0006364: rRNA processing	1.52E-02
125	GO:0010025: wax biosynthetic process	1.52E-02
126	GO:0006636: unsaturated fatty acid biosynthetic process	1.52E-02
127	GO:0000027: ribosomal large subunit assembly	1.63E-02
128	GO:0051017: actin filament bundle assembly	1.63E-02
129	GO:0010073: meristem maintenance	1.75E-02
130	GO:0019953: sexual reproduction	1.75E-02
131	GO:0007017: microtubule-based process	1.75E-02
132	GO:0003333: amino acid transmembrane transport	1.87E-02
133	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.88E-02
134	GO:0016226: iron-sulfur cluster assembly	2.00E-02
135	GO:0071369: cellular response to ethylene stimulus	2.12E-02
136	GO:0010227: floral organ abscission	2.12E-02
137	GO:0009411: response to UV	2.12E-02
138	GO:0009624: response to nematode	2.16E-02
139	GO:0042147: retrograde transport, endosome to Golgi	2.39E-02
140	GO:0034220: ion transmembrane transport	2.52E-02
141	GO:0080022: primary root development	2.52E-02
142	GO:0010182: sugar mediated signaling pathway	2.66E-02
143	GO:0006457: protein folding	2.66E-02
144	GO:0009958: positive gravitropism	2.66E-02
145	GO:0006662: glycerol ether metabolic process	2.66E-02
146	GO:0032259: methylation	2.78E-02
147	GO:0015986: ATP synthesis coupled proton transport	2.80E-02
148	GO:0009058: biosynthetic process	2.86E-02
149	GO:0006623: protein targeting to vacuole	2.95E-02
150	GO:0006891: intra-Golgi vesicle-mediated transport	3.09E-02
151	GO:0009790: embryo development	3.16E-02
152	GO:0016032: viral process	3.24E-02
153	GO:0071281: cellular response to iron ion	3.39E-02
154	GO:0006633: fatty acid biosynthetic process	3.40E-02
155	GO:0045490: pectin catabolic process	3.74E-02
156	GO:0009739: response to gibberellin	4.18E-02
157	GO:0006888: ER to Golgi vesicle-mediated transport	4.51E-02
158	GO:0016311: dephosphorylation	4.68E-02
159	GO:0009817: defense response to fungus, incompatible interaction	4.85E-02
160	GO:0018298: protein-chromophore linkage	4.85E-02

Rank	GO Term	Adjusted P value
1	GO:0102193: protein-ribulosamine 3-kinase activity	0.00E+00
2	GO:0005048: signal sequence binding	0.00E+00
3	GO:0010301: xanthoxin dehydrogenase activity	0.00E+00
4	GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity	0.00E+00
5	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
6	GO:0047661: amino-acid racemase activity	0.00E+00
7	GO:0019843: rRNA binding	4.97E-12
8	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	3.34E-09
9	GO:0005528: FK506 binding	9.08E-08
10	GO:0016851: magnesium chelatase activity	1.59E-07
11	GO:0003735: structural constituent of ribosome	1.93E-05
12	GO:0043023: ribosomal large subunit binding	3.45E-05
13	GO:0004130: cytochrome-c peroxidase activity	1.41E-04
14	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	1.41E-04
15	GO:0015245: fatty acid transporter activity	3.09E-04
16	GO:0030794: (S)-coclaurine-N-methyltransferase activity	3.09E-04
17	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	3.09E-04
18	GO:0045485: omega-6 fatty acid desaturase activity	3.09E-04
19	GO:0005080: protein kinase C binding	3.09E-04
20	GO:0016788: hydrolase activity, acting on ester bonds	6.73E-04
21	GO:0047746: chlorophyllase activity	6.76E-04
22	GO:0009977: proton motive force dependent protein transmembrane transporter activity	6.76E-04
23	GO:0004617: phosphoglycerate dehydrogenase activity	6.76E-04
24	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	6.76E-04
25	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	6.76E-04
26	GO:0016630: protochlorophyllide reductase activity	6.76E-04
27	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	6.76E-04
28	GO:0008266: poly(U) RNA binding	1.08E-03
29	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	1.10E-03
30	GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity	1.10E-03
31	GO:0008864: formyltetrahydrofolate deformylase activity	1.10E-03
32	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	1.10E-03
33	GO:0052689: carboxylic ester hydrolase activity	1.13E-03
34	GO:0001872: (1->3)-beta-D-glucan binding	1.57E-03
35	GO:0004445: inositol-polyphosphate 5-phosphatase activity	1.57E-03
36	GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity	2.11E-03
37	GO:0004659: prenyltransferase activity	2.11E-03
38	GO:0001053: plastid sigma factor activity	2.11E-03
39	GO:0010011: auxin binding	2.11E-03
40	GO:0016987: sigma factor activity	2.11E-03
41	GO:0010328: auxin influx transmembrane transporter activity	2.11E-03
42	GO:0043495: protein anchor	2.11E-03
43	GO:0030570: pectate lyase activity	2.15E-03
44	GO:0051287: NAD binding	2.18E-03
45	GO:0003959: NADPH dehydrogenase activity	2.69E-03
46	GO:0004040: amidase activity	2.69E-03
47	GO:0016491: oxidoreductase activity	3.22E-03
48	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	3.32E-03
49	GO:0031177: phosphopantetheine binding	3.32E-03
50	GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity	3.32E-03
51	GO:0016688: L-ascorbate peroxidase activity	3.32E-03
52	GO:0004559: alpha-mannosidase activity	4.00E-03
53	GO:0000035: acyl binding	4.00E-03
54	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	4.00E-03
55	GO:0016746: transferase activity, transferring acyl groups	4.06E-03
56	GO:0019899: enzyme binding	4.72E-03
57	GO:0005509: calcium ion binding	4.84E-03
58	GO:0016597: amino acid binding	4.96E-03
59	GO:0008312: 7S RNA binding	5.48E-03
60	GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process	5.48E-03
61	GO:0052747: sinapyl alcohol dehydrogenase activity	5.48E-03
62	GO:0043022: ribosome binding	5.48E-03
63	GO:0005381: iron ion transmembrane transporter activity	8.01E-03
64	GO:0008047: enzyme activator activity	8.92E-03
65	GO:0045551: cinnamyl-alcohol dehydrogenase activity	1.09E-02
66	GO:0008378: galactosyltransferase activity	1.09E-02
67	GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity	1.09E-02
68	GO:0031072: heat shock protein binding	1.19E-02
69	GO:0004565: beta-galactosidase activity	1.19E-02
70	GO:0004022: alcohol dehydrogenase (NAD) activity	1.19E-02
71	GO:0008168: methyltransferase activity	1.30E-02
72	GO:0051536: iron-sulfur cluster binding	1.63E-02
73	GO:0051087: chaperone binding	1.75E-02
74	GO:0003824: catalytic activity	2.05E-02
75	GO:0022891: substrate-specific transmembrane transporter activity	2.12E-02
76	GO:0051082: unfolded protein binding	2.16E-02
77	GO:0003756: protein disulfide isomerase activity	2.25E-02
78	GO:0047134: protein-disulfide reductase activity	2.39E-02
79	GO:0016787: hydrolase activity	2.46E-02
80	GO:0008080: N-acetyltransferase activity	2.66E-02
81	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	2.66E-02
82	GO:0004791: thioredoxin-disulfide reductase activity	2.80E-02
83	GO:0050662: coenzyme binding	2.80E-02
84	GO:0016829: lyase activity	2.93E-02
85	GO:0004518: nuclease activity	3.24E-02
86	GO:0004519: endonuclease activity	3.26E-02
87	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	3.39E-02
88	GO:0051015: actin filament binding	3.39E-02
89	GO:0003729: mRNA binding	3.41E-02
90	GO:0016791: phosphatase activity	3.55E-02
91	GO:0005200: structural constituent of cytoskeleton	3.70E-02
92	GO:0015250: water channel activity	4.02E-02
93	GO:0016168: chlorophyll binding	4.18E-02
94	GO:0030247: polysaccharide binding	4.51E-02
95	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	4.73E-02
96	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	4.85E-02

Rank	GO Term	Adjusted P value
1	GO:0044391: ribosomal subunit	0.00E+00
2	GO:0009515: granal stacked thylakoid	0.00E+00
3	GO:0009507: chloroplast	9.17E-42
4	GO:0009570: chloroplast stroma	1.39E-31
5	GO:0009579: thylakoid	1.31E-22
6	GO:0009534: chloroplast thylakoid	1.47E-22
7	GO:0009535: chloroplast thylakoid membrane	1.00E-21
8	GO:0009941: chloroplast envelope	1.04E-21
9	GO:0009543: chloroplast thylakoid lumen	3.70E-18
10	GO:0031977: thylakoid lumen	1.93E-14
11	GO:0005840: ribosome	1.18E-08
12	GO:0010007: magnesium chelatase complex	3.28E-08
13	GO:0009654: photosystem II oxygen evolving complex	1.21E-07
14	GO:0019898: extrinsic component of membrane	9.83E-07
15	GO:0005618: cell wall	3.01E-04
16	GO:0009547: plastid ribosome	3.09E-04
17	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	3.09E-04
18	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	4.68E-04
19	GO:0080085: signal recognition particle, chloroplast targeting	6.76E-04
20	GO:0030093: chloroplast photosystem I	6.76E-04
21	GO:0030095: chloroplast photosystem II	1.08E-03
22	GO:0009897: external side of plasma membrane	1.10E-03
23	GO:0033281: TAT protein transport complex	1.10E-03
24	GO:0016020: membrane	1.26E-03
25	GO:0015630: microtubule cytoskeleton	1.57E-03
26	GO:0009331: glycerol-3-phosphate dehydrogenase complex	1.57E-03
27	GO:0048046: apoplast	1.72E-03
28	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	3.32E-03
29	GO:0009523: photosystem II	3.39E-03
30	GO:0031969: chloroplast membrane	4.21E-03
31	GO:0009295: nucleoid	4.67E-03
32	GO:0009986: cell surface	4.72E-03
33	GO:0010287: plastoglobule	4.86E-03
34	GO:0012507: ER to Golgi transport vesicle membrane	5.48E-03
35	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	6.28E-03
36	GO:0009536: plastid	8.44E-03
37	GO:0000311: plastid large ribosomal subunit	1.09E-02
38	GO:0032040: small-subunit processome	1.09E-02
39	GO:0046658: anchored component of plasma membrane	1.12E-02
40	GO:0031225: anchored component of membrane	1.12E-02
41	GO:0009508: plastid chromosome	1.19E-02
42	GO:0042651: thylakoid membrane	1.75E-02
43	GO:0015629: actin cytoskeleton	2.12E-02
44	GO:0009706: chloroplast inner membrane	2.16E-02
45	GO:0043231: intracellular membrane-bounded organelle	3.31E-02
46	GO:0010319: stromule	3.70E-02
47	GO:0005886: plasma membrane	3.74E-02