gene detail

Gene description

TAIR ID: AT5G52970

Short description: thylakoid lumen 15.0 kDa protein

Pathogen responsiveness: 0.51

General responsiveness: 2.27

Orthologous

Rice: No orthologous gene

Maize:

GRMZM2G022876

Wheat: No orthologous gene

GO biological process

biological_process

GO cellular component

thylakoid lumen, chloroplast thylakoid lumen, thylakoid, chloroplast

GO molecular function

molecular_function

Protein domain

No domain annotation

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation

Regulator:
AT5G61850

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 1

click to view PPI network

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE56094_WT_HRPA-  view
GSE13739_WT_GO  view
GSE13739_EDS16_GO  view
GSE5686_WT_GO  view
GSE56094_WT_PSTDC3000  view
GSE45212_MED14_PSTDC3000_AVRRPT2  view

Differentially expressed condition

25 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE17464	Laer, control	Laer, Alternaria brassicicola 3 d	1.79	6.62E-03
GSE17464	Penta, control	Penta, Alternaria brassicicola 3 d	1.83	4.65E-03
GSE17464	Penta, control	Penta, PstDC3000 12 h	1.58	1.55E-02
GSE17500	Col, 35S:AFB1, control 0 h	Col, 35S:AFB1, PstDC3000 24 h	-2.40	1.09E-04
GSE17500	Col, WT, control 0 h	Col, WT, PstDC3000 24 h	-2.46	5.01E-05
GSE17500	Col, miR393, control 0 h	Col, miR393, PstDC3000 24 h	-2.48	7.07E-05
GSE18978	Col, WT, control 24 h	Col, WT, PsmES4326 24 h	-4.48	1.47E-11
GSE21920	Col, WT, mock	Col, WT, Pto HopZ1a 6 h	-1.84	5.77E-06
GSE40544	Col, WT, control	Col, WT, PstDC3000 AvrRpt2	-2.33	6.40E-05
GSE40544	Col, WT, control	Col, WT, PstDC3000 EV	-2.00	2.41E-04
GSE40544	Col, Sid2, control	Col, Sid2, PstDC3000 AvrRpt2	-2.35	6.02E-05
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 12 h	-2.78	1.36E-10
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 8 h	-1.69	1.94E-07
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 12 h	-3.80	1.64E-12
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 4 h	-2.11	8.99E-09
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 8 h	-3.06	3.15E-11
GSE45214	Col, med16, PstDC3000 AvrRpt2 0 h	Col, med16, PstDC3000 AvrRpt2 4 h	-1.72	5.01E-11
GSE50526	Col, WT, mock 24 h	Col, WT, A. brassicicola 24 h	-1.92	3.18E-03
GSE5520	Col, WT, control 10 h	Col, WT, Cor- 10 h	-2.99	7.89E-06
GSE5520	Col, WT, control 24 h	Col, WT, PstDC3000 24 h	-1.50	2.06E-02
GSE5520	Col, WT, control 7 h	Col, WT, PstDC3000 7 h	-2.50	4.60E-06
GSE56094	Col, WT, control 13 h	Col, WT, PstDC3000 13 h	-1.58	8.36E-11
GSE58954	Col, WT, Psm AvrRpt2 0 h	Col, WT, Psm AvrRpt2 6 h	-1.72	3.47E-03
GSE6176	Col, WT, control 12 h	Col, WT, PstDC3000 HrpA- 12 h	-1.54	6.21E-04
GSE6176	Col, WT, control 12 h	Col, WT, PstDC3000 12 h	-1.86	2.88E-05