co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G52970

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0005996: monosaccharide metabolic process	0.00E+00
2	GO:0035674: tricarboxylic acid transmembrane transport	0.00E+00
3	GO:0009773: photosynthetic electron transport in photosystem I	4.38E-12
4	GO:0015995: chlorophyll biosynthetic process	8.88E-09
5	GO:0015979: photosynthesis	1.20E-07
6	GO:0030388: fructose 1,6-bisphosphate metabolic process	1.22E-06
7	GO:0032544: plastid translation	2.36E-06
8	GO:0010206: photosystem II repair	3.34E-06
9	GO:0006000: fructose metabolic process	4.55E-06
10	GO:0090391: granum assembly	4.55E-06
11	GO:0005983: starch catabolic process	1.01E-05
12	GO:0010196: nonphotochemical quenching	8.96E-05
13	GO:0009772: photosynthetic electron transport in photosystem II	8.96E-05
14	GO:0042254: ribosome biogenesis	1.07E-04
15	GO:0006810: transport	1.10E-04
16	GO:0006002: fructose 6-phosphate metabolic process	1.44E-04
17	GO:0009735: response to cytokinin	1.57E-04
18	GO:0000025: maltose catabolic process	1.58E-04
19	GO:0005980: glycogen catabolic process	1.58E-04
20	GO:0034337: RNA folding	1.58E-04
21	GO:0006835: dicarboxylic acid transport	1.58E-04
22	GO:0071588: hydrogen peroxide mediated signaling pathway	1.58E-04
23	GO:0000023: maltose metabolic process	1.58E-04
24	GO:0010027: thylakoid membrane organization	1.89E-04
25	GO:0006412: translation	2.94E-04
26	GO:0009631: cold acclimation	3.30E-04
27	GO:0005976: polysaccharide metabolic process	3.60E-04
28	GO:0010353: response to trehalose	3.60E-04
29	GO:0006729: tetrahydrobiopterin biosynthetic process	3.60E-04
30	GO:0006094: gluconeogenesis	3.82E-04
31	GO:0005986: sucrose biosynthetic process	3.82E-04
32	GO:0010207: photosystem II assembly	4.31E-04
33	GO:0006636: unsaturated fatty acid biosynthetic process	5.37E-04
34	GO:0006518: peptide metabolic process	5.89E-04
35	GO:0009768: photosynthesis, light harvesting in photosystem I	6.55E-04
36	GO:0061077: chaperone-mediated protein folding	7.18E-04
37	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	8.43E-04
38	GO:0006020: inositol metabolic process	8.43E-04
39	GO:0071484: cellular response to light intensity	8.43E-04
40	GO:0051085: chaperone mediated protein folding requiring cofactor	8.43E-04
41	GO:0045727: positive regulation of translation	1.12E-03
42	GO:0015994: chlorophyll metabolic process	1.12E-03
43	GO:0006021: inositol biosynthetic process	1.12E-03
44	GO:0000302: response to reactive oxygen species	1.41E-03
45	GO:0006461: protein complex assembly	1.41E-03
46	GO:0055114: oxidation-reduction process	1.61E-03
47	GO:0046855: inositol phosphate dephosphorylation	1.74E-03
48	GO:1902456: regulation of stomatal opening	1.74E-03
49	GO:0010190: cytochrome b6f complex assembly	1.74E-03
50	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	1.74E-03
51	GO:0006633: fatty acid biosynthetic process	2.05E-03
52	GO:0042026: protein refolding	2.09E-03
53	GO:1901259: chloroplast rRNA processing	2.09E-03
54	GO:0009854: oxidative photosynthetic carbon pathway	2.09E-03
55	GO:0010019: chloroplast-nucleus signaling pathway	2.09E-03
56	GO:0009610: response to symbiotic fungus	2.45E-03
57	GO:0016311: dephosphorylation	2.51E-03
58	GO:0030091: protein repair	2.84E-03
59	GO:0009657: plastid organization	3.25E-03
60	GO:0034599: cellular response to oxidative stress	3.48E-03
61	GO:0006783: heme biosynthetic process	3.67E-03
62	GO:0006754: ATP biosynthetic process	3.67E-03
63	GO:0009658: chloroplast organization	4.02E-03
64	GO:0010205: photoinhibition	4.12E-03
65	GO:0006782: protoporphyrinogen IX biosynthetic process	4.58E-03
66	GO:0009641: shade avoidance	4.58E-03
67	GO:0006415: translational termination	5.05E-03
68	GO:0009089: lysine biosynthetic process via diaminopimelate	5.05E-03
69	GO:0000272: polysaccharide catabolic process	5.05E-03
70	GO:0009750: response to fructose	5.05E-03
71	GO:0018119: peptidyl-cysteine S-nitrosylation	5.05E-03
72	GO:0009409: response to cold	5.52E-03
73	GO:0006790: sulfur compound metabolic process	5.55E-03
74	GO:0006364: rRNA processing	5.77E-03
75	GO:0019253: reductive pentose-phosphate cycle	6.59E-03
76	GO:0010223: secondary shoot formation	6.59E-03
77	GO:0009266: response to temperature stimulus	6.59E-03
78	GO:0005985: sucrose metabolic process	7.13E-03
79	GO:0071732: cellular response to nitric oxide	7.13E-03
80	GO:0046854: phosphatidylinositol phosphorylation	7.13E-03
81	GO:0000027: ribosomal large subunit assembly	8.27E-03
82	GO:0051017: actin filament bundle assembly	8.27E-03
83	GO:0006629: lipid metabolic process	8.66E-03
84	GO:0016114: terpenoid biosynthetic process	9.46E-03
85	GO:0035428: hexose transmembrane transport	1.01E-02
86	GO:0016226: iron-sulfur cluster assembly	1.01E-02
87	GO:0007005: mitochondrion organization	1.01E-02
88	GO:0071369: cellular response to ethylene stimulus	1.07E-02
89	GO:0006012: galactose metabolic process	1.07E-02
90	GO:0042744: hydrogen peroxide catabolic process	1.17E-02
91	GO:0070417: cellular response to cold	1.20E-02
92	GO:0042631: cellular response to water deprivation	1.27E-02
93	GO:0046323: glucose import	1.34E-02
94	GO:0015986: ATP synthesis coupled proton transport	1.41E-02
95	GO:0071281: cellular response to iron ion	1.71E-02
96	GO:0045893: positive regulation of transcription, DNA-templated	2.14E-02
97	GO:0009627: systemic acquired resistance	2.19E-02
98	GO:0018298: protein-chromophore linkage	2.44E-02
99	GO:0008219: cell death	2.44E-02
100	GO:0006457: protein folding	2.48E-02
101	GO:0010218: response to far red light	2.62E-02
102	GO:0007568: aging	2.71E-02
103	GO:0009853: photorespiration	2.89E-02
104	GO:0009637: response to blue light	2.89E-02
105	GO:0006839: mitochondrial transport	3.17E-02
106	GO:0010114: response to red light	3.46E-02
107	GO:0032259: methylation	3.86E-02
108	GO:0009793: embryo development ending in seed dormancy	4.22E-02
109	GO:0042742: defense response to bacterium	4.32E-02
110	GO:0006979: response to oxidative stress	4.36E-02

Rank	GO Term	Adjusted P value
1	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
2	GO:0016631: enoyl-[acyl-carrier-protein] reductase activity	0.00E+00
3	GO:0050515: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity	0.00E+00
4	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
5	GO:0008887: glycerate kinase activity	0.00E+00
6	GO:0046408: chlorophyll synthetase activity	0.00E+00
7	GO:0015142: tricarboxylic acid transmembrane transporter activity	0.00E+00
8	GO:0004318: enoyl-[acyl-carrier-protein] reductase (NADH) activity	0.00E+00
9	GO:0019843: rRNA binding	3.97E-11
10	GO:0005528: FK506 binding	5.27E-07
11	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	1.22E-06
12	GO:0010297: heteropolysaccharide binding	1.22E-06
13	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	3.00E-06
14	GO:0003735: structural constituent of ribosome	9.13E-06
15	GO:0016851: magnesium chelatase activity	1.06E-05
16	GO:0004130: cytochrome-c peroxidase activity	4.79E-05
17	GO:0050521: alpha-glucan, water dikinase activity	1.58E-04
18	GO:0008184: glycogen phosphorylase activity	1.58E-04
19	GO:0004853: uroporphyrinogen decarboxylase activity	1.58E-04
20	GO:0045485: omega-6 fatty acid desaturase activity	1.58E-04
21	GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity	1.58E-04
22	GO:0004134: 4-alpha-glucanotransferase activity	1.58E-04
23	GO:0004645: phosphorylase activity	1.58E-04
24	GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity	1.58E-04
25	GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity	1.58E-04
26	GO:0044183: protein binding involved in protein folding	2.91E-04
27	GO:0052832: inositol monophosphate 3-phosphatase activity	3.60E-04
28	GO:0008934: inositol monophosphate 1-phosphatase activity	3.60E-04
29	GO:0052833: inositol monophosphate 4-phosphatase activity	3.60E-04
30	GO:0008967: phosphoglycolate phosphatase activity	3.60E-04
31	GO:0018708: thiol S-methyltransferase activity	3.60E-04
32	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	3.60E-04
33	GO:0047746: chlorophyllase activity	3.60E-04
34	GO:0042389: omega-3 fatty acid desaturase activity	3.60E-04
35	GO:0031072: heat shock protein binding	3.82E-04
36	GO:0031409: pigment binding	5.37E-04
37	GO:0010277: chlorophyllide a oxygenase [overall] activity	5.89E-04
38	GO:0005310: dicarboxylic acid transmembrane transporter activity	5.89E-04
39	GO:0070402: NADPH binding	5.89E-04
40	GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity	5.89E-04
41	GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity	5.89E-04
42	GO:0019201: nucleotide kinase activity	8.43E-04
43	GO:0016149: translation release factor activity, codon specific	8.43E-04
44	GO:0017077: oxidative phosphorylation uncoupler activity	8.43E-04
45	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.12E-03
46	GO:0051082: unfolded protein binding	1.16E-03
47	GO:0048038: quinone binding	1.41E-03
48	GO:0016688: L-ascorbate peroxidase activity	1.74E-03
49	GO:2001070: starch binding	1.74E-03
50	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	2.09E-03
51	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	2.09E-03
52	GO:0004017: adenylate kinase activity	2.09E-03
53	GO:0051920: peroxiredoxin activity	2.09E-03
54	GO:0016168: chlorophyll binding	2.14E-03
55	GO:0004034: aldose 1-epimerase activity	2.84E-03
56	GO:0004033: aldo-keto reductase (NADP) activity	2.84E-03
57	GO:0016209: antioxidant activity	2.84E-03
58	GO:0004222: metalloendopeptidase activity	2.90E-03
59	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	3.25E-03
60	GO:0003747: translation release factor activity	3.67E-03
61	GO:0047617: acyl-CoA hydrolase activity	4.12E-03
62	GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity	4.12E-03
63	GO:0030234: enzyme regulator activity	4.58E-03
64	GO:0051537: 2 iron, 2 sulfur cluster binding	4.64E-03
65	GO:0047372: acylglycerol lipase activity	5.05E-03
66	GO:0016491: oxidoreductase activity	5.26E-03
67	GO:0051536: iron-sulfur cluster binding	8.27E-03
68	GO:0003756: protein disulfide isomerase activity	1.14E-02
69	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	1.34E-02
70	GO:0005355: glucose transmembrane transporter activity	1.41E-02
71	GO:0050662: coenzyme binding	1.41E-02
72	GO:0016853: isomerase activity	1.41E-02
73	GO:0051015: actin filament binding	1.71E-02
74	GO:0008237: metallopeptidase activity	1.86E-02
75	GO:0008168: methyltransferase activity	2.13E-02
76	GO:0004601: peroxidase activity	2.21E-02
77	GO:0046872: metal ion binding	2.78E-02
78	GO:0003993: acid phosphatase activity	2.98E-02
79	GO:0016787: hydrolase activity	3.78E-02
80	GO:0003723: RNA binding	4.42E-02

Rank	GO Term	Adjusted P value
1	GO:0005835: fatty acid synthase complex	0.00E+00
2	GO:0009515: granal stacked thylakoid	0.00E+00
3	GO:0009507: chloroplast	3.55E-60
4	GO:0009535: chloroplast thylakoid membrane	1.90E-44
5	GO:0009941: chloroplast envelope	7.08E-37
6	GO:0009534: chloroplast thylakoid	7.30E-36
7	GO:0009570: chloroplast stroma	1.17E-27
8	GO:0009579: thylakoid	5.25E-20
9	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	6.70E-13
10	GO:0009543: chloroplast thylakoid lumen	1.03E-12
11	GO:0031977: thylakoid lumen	2.33E-11
12	GO:0005840: ribosome	5.59E-07
13	GO:0010007: magnesium chelatase complex	4.55E-06
14	GO:0010319: stromule	7.27E-06
15	GO:0009706: chloroplast inner membrane	1.06E-05
16	GO:0031969: chloroplast membrane	1.60E-04
17	GO:0010287: plastoglobule	1.95E-04
18	GO:0031357: integral component of chloroplast inner membrane	3.60E-04
19	GO:0000427: plastid-encoded plastid RNA polymerase complex	3.60E-04
20	GO:0030095: chloroplast photosystem II	4.31E-04
21	GO:0030076: light-harvesting complex	4.83E-04
22	GO:0042651: thylakoid membrane	6.55E-04
23	GO:0015935: small ribosomal subunit	7.18E-04
24	GO:0009544: chloroplast ATP synthase complex	1.12E-03
25	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	1.74E-03
26	GO:0009533: chloroplast stromal thylakoid	2.45E-03
27	GO:0032040: small-subunit processome	5.55E-03
28	GO:0009654: photosystem II oxygen evolving complex	8.86E-03
29	GO:0048046: apoplast	1.05E-02
30	GO:0015629: actin cytoskeleton	1.07E-02
31	GO:0009522: photosystem I	1.41E-02
32	GO:0009523: photosystem II	1.48E-02
33	GO:0019898: extrinsic component of membrane	1.48E-02
34	GO:0022626: cytosolic ribosome	1.70E-02
35	GO:0009707: chloroplast outer membrane	2.44E-02
36	GO:0015934: large ribosomal subunit	2.71E-02
37	GO:0022625: cytosolic large ribosomal subunit	2.88E-02
38	GO:0005856: cytoskeleton	3.76E-02