gene detail

Gene description

TAIR ID: AT5G48560

Short description: basic helix-loop-helix (bHLH) DNA-binding superfamily protein

Pathogen responsiveness: -1.30

General responsiveness: 1.58

Orthologous

Rice:

OS01G0915600 OS09G0474100 OS03G0802900 OS05G0541400

Maize:

GRMZM2G030762 GRMZM2G180406

Wheat: No orthologous gene

GO biological process

regulation of transcription, DNA-templated, transcription, response to blue light

GO cellular component

nucleus

GO molecular function

protein dimerization activity, transcription factor activity, sequence-specific DNA binding, DNA binding, protein binding

Protein domain

Pfam	PF00010, Helix-loop-helix DNA-binding domain
SMART	SM00353, HLH

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation

Regulator:
AT5G13790

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 3

click to view PPI network

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE56094_WT_HRPA-  view
GSE56094_WT_PSTDC3000  view
GSE45212_MED14_PSTDC3000_AVRRPT2  view

Differentially expressed condition

7 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE26679	Col, WT, GC 0 h	Col, WT, GC 18 h	1.54	1.60E-05
GSE26679	Col, WT, GC 0 h	Col, WT, GC 36 h	1.86	9.55E-07
GSE26679	Col, edr1, GC 0 h	Col, edr1, GC 36 h	1.76	1.46E-06
GSE37269	Ei2, WT, control	Ei2, WT, TEV 21 d	-2.39	3.12E-03
GSE37269	St0, WT, control	St0, WT, TEV 21 d	-2.15	4.54E-03
GSE58954	Col, WT, Psm AvrRpt2 0 h	Col, WT, Psm AvrRpt2 6 h	1.71	7.72E-04
GSE6176	Col, WT, control 4 h	Col, WT, PstDC3000 AvrRpm1 4 h	1.52	3.22E-06