Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G48560

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0009312: oligosaccharide biosynthetic process0.00E+00
2GO:0006983: ER overload response0.00E+00
3GO:0090480: purine nucleotide-sugar transmembrane transport0.00E+00
4GO:0010401: pectic galactan metabolic process0.00E+00
5GO:0046865: terpenoid transport0.00E+00
6GO:0015012: heparan sulfate proteoglycan biosynthetic process2.81E-07
7GO:0006024: glycosaminoglycan biosynthetic process2.81E-07
8GO:0009863: salicylic acid mediated signaling pathway4.37E-06
9GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline3.30E-05
10GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway6.42E-05
11GO:0006562: proline catabolic process7.07E-05
12GO:0032469: endoplasmic reticulum calcium ion homeostasis7.07E-05
13GO:0042539: hypotonic salinity response7.07E-05
14GO:0034975: protein folding in endoplasmic reticulum7.07E-05
15GO:0016337: single organismal cell-cell adhesion7.07E-05
16GO:0009868: jasmonic acid and ethylene-dependent systemic resistance, jasmonic acid mediated signaling pathway7.07E-05
17GO:0000303: response to superoxide7.07E-05
18GO:0043066: negative regulation of apoptotic process1.70E-04
19GO:0008535: respiratory chain complex IV assembly1.70E-04
20GO:0010155: regulation of proton transport1.70E-04
21GO:0010133: proline catabolic process to glutamate1.70E-04
22GO:0052541: plant-type cell wall cellulose metabolic process1.70E-04
23GO:0080168: abscisic acid transport2.86E-04
24GO:0015783: GDP-fucose transport2.86E-04
25GO:0009410: response to xenobiotic stimulus2.86E-04
26GO:0015692: lead ion transport2.86E-04
27GO:0031022: nuclear migration along microfilament2.86E-04
28GO:0006537: glutamate biosynthetic process4.15E-04
29GO:0033617: mitochondrial respiratory chain complex IV assembly4.15E-04
30GO:0006809: nitric oxide biosynthetic process4.15E-04
31GO:0010193: response to ozone4.99E-04
32GO:0009902: chloroplast relocation5.53E-04
33GO:0007112: male meiosis cytokinesis5.53E-04
34GO:0006464: cellular protein modification process6.02E-04
35GO:0009229: thiamine diphosphate biosynthetic process7.00E-04
36GO:0006665: sphingolipid metabolic process7.00E-04
37GO:0009228: thiamine biosynthetic process8.57E-04
38GO:0009861: jasmonic acid and ethylene-dependent systemic resistance1.02E-03
39GO:0000911: cytokinesis by cell plate formation1.02E-03
40GO:0009867: jasmonic acid mediated signaling pathway1.15E-03
41GO:0010044: response to aluminum ion1.19E-03
42GO:0046470: phosphatidylcholine metabolic process1.19E-03
43GO:0009850: auxin metabolic process1.37E-03
44GO:0006605: protein targeting1.37E-03
45GO:0006367: transcription initiation from RNA polymerase II promoter1.56E-03
46GO:0006972: hyperosmotic response1.56E-03
47GO:0045454: cell redox homeostasis1.66E-03
48GO:0015780: nucleotide-sugar transport1.76E-03
49GO:0006486: protein glycosylation1.96E-03
50GO:0043067: regulation of programmed cell death1.97E-03
51GO:0009086: methionine biosynthetic process1.97E-03
52GO:0043069: negative regulation of programmed cell death2.19E-03
53GO:0009089: lysine biosynthetic process via diaminopimelate2.41E-03
54GO:0000038: very long-chain fatty acid metabolic process2.41E-03
55GO:0012501: programmed cell death2.64E-03
56GO:0045037: protein import into chloroplast stroma2.64E-03
57GO:0010102: lateral root morphogenesis2.88E-03
58GO:0009873: ethylene-activated signaling pathway2.98E-03
59GO:0080147: root hair cell development3.89E-03
60GO:2000377: regulation of reactive oxygen species metabolic process3.89E-03
61GO:0000027: ribosomal large subunit assembly3.89E-03
62GO:0030150: protein import into mitochondrial matrix3.89E-03
63GO:0009790: embryo development4.04E-03
64GO:0043622: cortical microtubule organization4.17E-03
65GO:0009738: abscisic acid-activated signaling pathway4.27E-03
66GO:0009814: defense response, incompatible interaction4.73E-03
67GO:0006470: protein dephosphorylation5.44E-03
68GO:0010087: phloem or xylem histogenesis5.93E-03
69GO:0002229: defense response to oomycetes7.22E-03
70GO:0016032: viral process7.56E-03
71GO:0032502: developmental process7.56E-03
72GO:0030163: protein catabolic process7.90E-03
73GO:0006970: response to osmotic stress7.93E-03
74GO:0009723: response to ethylene8.51E-03
75GO:0009816: defense response to bacterium, incompatible interaction9.71E-03
76GO:0009414: response to water deprivation1.06E-02
77GO:0042742: defense response to bacterium1.09E-02
78GO:0008219: cell death1.13E-02
79GO:0016042: lipid catabolic process1.31E-02
80GO:0009751: response to salicylic acid1.33E-02
81GO:0009408: response to heat1.35E-02
82GO:0008643: carbohydrate transport1.68E-02
83GO:0006855: drug transmembrane transport1.77E-02
84GO:0009846: pollen germination1.87E-02
85GO:0010224: response to UV-B2.01E-02
86GO:0009620: response to fungus2.37E-02
87GO:0042545: cell wall modification2.47E-02
88GO:0007275: multicellular organism development2.56E-02
89GO:0018105: peptidyl-serine phosphorylation2.58E-02
90GO:0006396: RNA processing2.58E-02
91GO:0055114: oxidation-reduction process2.99E-02
92GO:0055085: transmembrane transport3.05E-02
93GO:0006413: translational initiation3.55E-02
94GO:0010150: leaf senescence3.73E-02
95GO:0045490: pectin catabolic process3.73E-02
96GO:0009451: RNA modification3.79E-02
97GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process4.04E-02
98GO:0007166: cell surface receptor signaling pathway4.10E-02
99GO:0009617: response to bacterium4.23E-02
100GO:0010468: regulation of gene expression4.23E-02
101GO:0006351: transcription, DNA-templated4.63E-02
RankGO TermAdjusted P value
1GO:0050334: thiaminase activity0.00E+00
2GO:0008455: alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity0.00E+00
3GO:0004656: procollagen-proline 4-dioxygenase activity1.83E-05
4GO:0004630: phospholipase D activity4.22E-05
5GO:0070290: N-acylphosphatidylethanolamine-specific phospholipase D activity4.22E-05
6GO:0004657: proline dehydrogenase activity7.07E-05
7GO:0047150: betaine-homocysteine S-methyltransferase activity7.07E-05
8GO:0010285: L,L-diaminopimelate aminotransferase activity7.07E-05
9GO:0015036: disulfide oxidoreductase activity1.70E-04
10GO:0031418: L-ascorbic acid binding2.00E-04
11GO:0005457: GDP-fucose transmembrane transporter activity2.86E-04
12GO:0010178: IAA-amino acid conjugate hydrolase activity4.15E-04
13GO:0003950: NAD+ ADP-ribosyltransferase activity1.02E-03
14GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors1.15E-03
15GO:0004525: ribonuclease III activity1.37E-03
16GO:0004722: protein serine/threonine phosphatase activity1.86E-03
17GO:0005509: calcium ion binding2.03E-03
18GO:0015035: protein disulfide oxidoreductase activity2.86E-03
19GO:0031072: heat shock protein binding2.88E-03
20GO:0005262: calcium channel activity2.88E-03
21GO:0015266: protein channel activity2.88E-03
22GO:0035251: UDP-glucosyltransferase activity4.44E-03
23GO:0004707: MAP kinase activity4.44E-03
24GO:0003756: protein disulfide isomerase activity5.32E-03
25GO:0042626: ATPase activity, coupled to transmembrane movement of substances6.05E-03
26GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor7.90E-03
27GO:0008483: transaminase activity8.61E-03
28GO:0008237: metallopeptidase activity8.61E-03
29GO:0008375: acetylglucosaminyltransferase activity1.01E-02
30GO:0009931: calcium-dependent protein serine/threonine kinase activity1.01E-02
31GO:0004683: calmodulin-dependent protein kinase activity1.05E-02
32GO:0005506: iron ion binding1.07E-02
33GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity1.13E-02
34GO:0035091: phosphatidylinositol binding1.68E-02
35GO:0045330: aspartyl esterase activity2.11E-02
36GO:0016874: ligase activity2.42E-02
37GO:0030599: pectinesterase activity2.42E-02
38GO:0051082: unfolded protein binding2.53E-02
39GO:0043565: sequence-specific DNA binding2.69E-02
40GO:0016740: transferase activity2.93E-02
41GO:0030170: pyridoxal phosphate binding3.19E-02
42GO:0015144: carbohydrate transmembrane transporter activity3.37E-02
43GO:0004675: transmembrane receptor protein serine/threonine kinase activity3.55E-02
44GO:0046910: pectinesterase inhibitor activity3.55E-02
45GO:0015297: antiporter activity3.61E-02
46GO:0005351: sugar:proton symporter activity3.67E-02
47GO:0003743: translation initiation factor activity4.16E-02
48GO:0046872: metal ion binding4.26E-02
49GO:0003700: transcription factor activity, sequence-specific DNA binding4.38E-02
50GO:0042802: identical protein binding4.42E-02
51GO:0044212: transcription regulatory region DNA binding4.84E-02
52GO:0008168: methyltransferase activity4.95E-02
RankGO TermAdjusted P value
1GO:0005674: transcription factor TFIIF complex0.00E+00
2GO:0031314: extrinsic component of mitochondrial inner membrane1.70E-04
3GO:0005789: endoplasmic reticulum membrane2.01E-04
4GO:0005623: cell4.07E-04
5GO:0016363: nuclear matrix1.02E-03
6GO:0031305: integral component of mitochondrial inner membrane1.37E-03
7GO:0005743: mitochondrial inner membrane1.97E-03
8GO:0030176: integral component of endoplasmic reticulum membrane3.37E-03
9GO:0005795: Golgi stack3.37E-03
10GO:0005783: endoplasmic reticulum4.29E-03
11GO:0016021: integral component of membrane4.30E-03
12GO:0031410: cytoplasmic vesicle4.73E-03
13GO:0005744: mitochondrial inner membrane presequence translocase complex5.32E-03
14GO:0009504: cell plate6.89E-03
15GO:0071944: cell periphery7.90E-03
16GO:0005622: intracellular9.24E-03
17GO:0022625: cytosolic large ribosomal subunit9.60E-03
18GO:0000151: ubiquitin ligase complex1.13E-02
19GO:0000325: plant-type vacuole1.25E-02
20GO:0000139: Golgi membrane1.60E-02
21GO:0005635: nuclear envelope2.06E-02
22GO:0009706: chloroplast inner membrane2.53E-02
23GO:0005794: Golgi apparatus2.63E-02
24GO:0005737: cytoplasm3.33E-02
25GO:0005802: trans-Golgi network3.84E-02
26GO:0016020: membrane4.17E-02
27GO:0005768: endosome4.36E-02
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Gene type



Gene DE type