Gene: AT5G47960
     

Gene description


TAIR ID: AT5G47960

Short description: RAB GTPase homolog A4C

Pathogen responsiveness: 0.34

General responsiveness: 0.24

Orthologous


Rice: No orthologous gene
Maize:

GRMZM2G019119  

Wheat: No orthologous gene

GO biological process


protein transport


GO cellular component


endosome, plasma membrane, Golgi apparatus


GO molecular function


GTPase activity, GTP binding


Protein domain


PfamPF00071, Ras family
SMARTSM00173, RAS
SMARTSM00175, RAB
SMARTSM00177, ARF
SMARTSM00176, RAN
SMARTSM00174, RHO

Metabolic pathway


Not involved in metabolic pathway


Transcriptional regulation


Regulator:
AT3G24050, AT3G14230, AT4G34680, AT2G45050, AT3G60530

Target:
none

Protein-protein interaction network


The number of partners (degree) is: 1

click to view PPI network

Differentially expressed condition


26 conditions



SeriesControlTreatmentLog2FCAdj. P value
GSE12856Col, WT, controlCol, WT, Bg h2.132.69E-06
GSE12856Col, ataf1, controlCol, ataf1, Bg h2.377.07E-07
GSE17464Laer, JA+Flg22 0 hLaer, JA+Flg22 1 h1.924.49E-03
GSE17464Laer, JA+Flg22 0 hLaer, JA+Flg22 2 h1.815.18E-03
GSE17464Laer, controlLaer, Flg22 1 h2.991.60E-06
GSE17464Laer, controlLaer, Flg22 2 h2.692.02E-05
GSE17464Penta, controlPenta, Flg22 2 h3.061.02E-06
GSE17464Penta, controlPenta, Flg22 2 h2.741.33E-05
GSE18978Col, WT, control 24 hCol, WT, PsmES4326 24 h1.911.20E-06
GSE2169Col, rre1, waterCol, rre1, chitin 30 min1.534.13E-09
GSE2538Col, WT, controlCol, WT, crab shell chitin 30 min2.592.40E-05
GSE2538Col, WT, controlCol, WT, purified chitin octamer 30 min2.151.02E-04
GSE40544Col, WT, controlCol, WT, PstDC3000 AvrRpt22.524.56E-07
GSE40544Col, WT, controlCol, WT, PstDC3000 EV1.915.58E-06
GSE40544Col, Sid2, controlCol, Sid2, PstDC3000 AvrRpt22.711.66E-07
GSE45212Col, WT, PstDC3000 AvrRpt2 0 hCol, WT, PstDC3000 AvrRpt2 4 h1.561.46E-09
GSE45212Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 4 h2.322.05E-12
GSE45214Col, WT, PstDC3000 AvrRpt2 0 hCol, WT, PstDC3000 AvrRpt2 4 h3.472.26E-14
GSE45214Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 4 h2.571.82E-12
GSE45214Col, med16, PstDC3000 AvrRpt2 0 hCol, med16, PstDC3000 AvrRpt2 4 h3.024.57E-14
GSE45214Col, npr1, PstDC3000 AvrRpt2 0 hCol, npr1, PstDC3000 AvrRpt2 4 h3.179.97E-14
GSE4746Col, WT, water 30 minCol, WT, chitooctaose 30 min1.971.09E-03
GSE50526Col, WT, mock 24 hCol, WT, A. brassicicola 24 h1.884.95E-05
GSE50526Col, WT, mock 9 hCol, WT, A. brassicicola 9 h1.921.32E-05
GSE58954Col, WT, Psm AvrRpt2 0 hCol, WT, Psm AvrRpt2 6 h1.682.43E-03
GSE8319Col, WT, controlCol, WT, chitooctaose 30 min2.981.24E-14






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