co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G47960

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0000354: cis assembly of pre-catalytic spliceosome	0.00E+00
2	GO:0072722: response to amitrole	0.00E+00
3	GO:0043201: response to leucine	0.00E+00
4	GO:0080052: response to histidine	0.00E+00
5	GO:0042430: indole-containing compound metabolic process	0.00E+00
6	GO:0080053: response to phenylalanine	0.00E+00
7	GO:0002376: immune system process	0.00E+00
8	GO:0030149: sphingolipid catabolic process	0.00E+00
9	GO:0006793: phosphorus metabolic process	0.00E+00
10	GO:0033542: fatty acid beta-oxidation, unsaturated, even number	0.00E+00
11	GO:0006182: cGMP biosynthetic process	0.00E+00
12	GO:0009617: response to bacterium	1.64E-09
13	GO:0006468: protein phosphorylation	5.17E-09
14	GO:0042742: defense response to bacterium	8.02E-08
15	GO:0071456: cellular response to hypoxia	8.24E-06
16	GO:0002237: response to molecule of bacterial origin	7.08E-05
17	GO:0070588: calcium ion transmembrane transport	8.48E-05
18	GO:0009697: salicylic acid biosynthetic process	9.74E-05
19	GO:0051707: response to other organism	2.43E-04
20	GO:0010150: leaf senescence	2.93E-04
21	GO:0099132: ATP hydrolysis coupled cation transmembrane transport	3.09E-04
22	GO:0010726: positive regulation of hydrogen peroxide metabolic process	3.09E-04
23	GO:1903648: positive regulation of chlorophyll catabolic process	3.09E-04
24	GO:0030091: protein repair	3.17E-04
25	GO:0009737: response to abscisic acid	3.84E-04
26	GO:0010120: camalexin biosynthetic process	3.89E-04
27	GO:0010112: regulation of systemic acquired resistance	4.68E-04
28	GO:0009626: plant-type hypersensitive response	5.67E-04
29	GO:0006032: chitin catabolic process	6.45E-04
30	GO:0080151: positive regulation of salicylic acid mediated signaling pathway	6.76E-04
31	GO:0090057: root radial pattern formation	6.76E-04
32	GO:0051788: response to misfolded protein	6.76E-04
33	GO:0044419: interspecies interaction between organisms	6.76E-04
34	GO:0031349: positive regulation of defense response	6.76E-04
35	GO:0019752: carboxylic acid metabolic process	6.76E-04
36	GO:0042939: tripeptide transport	6.76E-04
37	GO:0051592: response to calcium ion	6.76E-04
38	GO:0009682: induced systemic resistance	7.44E-04
39	GO:0000272: polysaccharide catabolic process	7.44E-04
40	GO:0012501: programmed cell death	8.50E-04
41	GO:0006952: defense response	8.96E-04
42	GO:0010200: response to chitin	1.01E-03
43	GO:0009407: toxin catabolic process	1.04E-03
44	GO:0010272: response to silver ion	1.10E-03
45	GO:0009871: jasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathway	1.10E-03
46	GO:0048281: inflorescence morphogenesis	1.10E-03
47	GO:0007188: adenylate cyclase-modulating G-protein coupled receptor signaling pathway	1.10E-03
48	GO:0034051: negative regulation of plant-type hypersensitive response	1.10E-03
49	GO:0010359: regulation of anion channel activity	1.10E-03
50	GO:0051176: positive regulation of sulfur metabolic process	1.10E-03
51	GO:0010351: lithium ion transport	1.10E-03
52	GO:0048194: Golgi vesicle budding	1.57E-03
53	GO:0006107: oxaloacetate metabolic process	1.57E-03
54	GO:0009647: skotomorphogenesis	1.57E-03
55	GO:0006882: cellular zinc ion homeostasis	1.57E-03
56	GO:0001676: long-chain fatty acid metabolic process	1.57E-03
57	GO:0010116: positive regulation of abscisic acid biosynthetic process	1.57E-03
58	GO:0055114: oxidation-reduction process	1.60E-03
59	GO:0016998: cell wall macromolecule catabolic process	1.80E-03
60	GO:0009751: response to salicylic acid	1.83E-03
61	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	1.85E-03
62	GO:0009636: response to toxic substance	1.98E-03
63	GO:0006536: glutamate metabolic process	2.11E-03
64	GO:0006734: NADH metabolic process	2.11E-03
65	GO:0080142: regulation of salicylic acid biosynthetic process	2.11E-03
66	GO:0042938: dipeptide transport	2.11E-03
67	GO:0034052: positive regulation of plant-type hypersensitive response	2.69E-03
68	GO:0000304: response to singlet oxygen	2.69E-03
69	GO:0043248: proteasome assembly	3.32E-03
70	GO:0060918: auxin transport	3.32E-03
71	GO:1902456: regulation of stomatal opening	3.32E-03
72	GO:0009117: nucleotide metabolic process	3.32E-03
73	GO:0002238: response to molecule of fungal origin	3.32E-03
74	GO:0006561: proline biosynthetic process	3.32E-03
75	GO:0010942: positive regulation of cell death	3.32E-03
76	GO:2000067: regulation of root morphogenesis	4.00E-03
77	GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	4.00E-03
78	GO:0006694: steroid biosynthetic process	4.00E-03
79	GO:0010555: response to mannitol	4.00E-03
80	GO:0048528: post-embryonic root development	4.72E-03
81	GO:0043090: amino acid import	4.72E-03
82	GO:1900056: negative regulation of leaf senescence	4.72E-03
83	GO:0007205: protein kinase C-activating G-protein coupled receptor signaling pathway	4.72E-03
84	GO:0030026: cellular manganese ion homeostasis	4.72E-03
85	GO:0050829: defense response to Gram-negative bacterium	4.72E-03
86	GO:1900057: positive regulation of leaf senescence	4.72E-03
87	GO:1902074: response to salt	4.72E-03
88	GO:0050790: regulation of catalytic activity	4.72E-03
89	GO:0009787: regulation of abscisic acid-activated signaling pathway	5.48E-03
90	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	5.48E-03
91	GO:0009819: drought recovery	5.48E-03
92	GO:0043068: positive regulation of programmed cell death	5.48E-03
93	GO:0031540: regulation of anthocyanin biosynthetic process	5.48E-03
94	GO:0009816: defense response to bacterium, incompatible interaction	5.55E-03
95	GO:0009627: systemic acquired resistance	5.86E-03
96	GO:0009699: phenylpropanoid biosynthetic process	6.28E-03
97	GO:0006075: (1->3)-beta-D-glucan biosynthetic process	6.28E-03
98	GO:0007186: G-protein coupled receptor signaling pathway	6.28E-03
99	GO:0010204: defense response signaling pathway, resistance gene-independent	6.28E-03
100	GO:0030968: endoplasmic reticulum unfolded protein response	6.28E-03
101	GO:0043562: cellular response to nitrogen levels	6.28E-03
102	GO:0009808: lignin metabolic process	6.28E-03
103	GO:0051865: protein autoubiquitination	7.12E-03
104	GO:0032259: methylation	7.13E-03
105	GO:0050832: defense response to fungus	7.15E-03
106	GO:0010119: regulation of stomatal movement	7.93E-03
107	GO:0010043: response to zinc ion	7.93E-03
108	GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway	8.01E-03
109	GO:0055062: phosphate ion homeostasis	8.92E-03
110	GO:0009870: defense response signaling pathway, resistance gene-dependent	8.92E-03
111	GO:0007166: cell surface receptor signaling pathway	9.31E-03
112	GO:0052544: defense response by callose deposition in cell wall	9.88E-03
113	GO:0009089: lysine biosynthetic process via diaminopimelate	9.88E-03
114	GO:0009750: response to fructose	9.88E-03
115	GO:0048229: gametophyte development	9.88E-03
116	GO:0042542: response to hydrogen peroxide	1.08E-02
117	GO:0006790: sulfur compound metabolic process	1.09E-02
118	GO:0006890: retrograde vesicle-mediated transport, Golgi to ER	1.09E-02
119	GO:0006108: malate metabolic process	1.19E-02
120	GO:0055046: microgametogenesis	1.19E-02
121	GO:0009718: anthocyanin-containing compound biosynthetic process	1.19E-02
122	GO:0010053: root epidermal cell differentiation	1.40E-02
123	GO:0046854: phosphatidylinositol phosphorylation	1.40E-02
124	GO:0009846: pollen germination	1.41E-02
125	GO:0042538: hyperosmotic salinity response	1.41E-02
126	GO:0000162: tryptophan biosynthetic process	1.52E-02
127	GO:0080147: root hair cell development	1.63E-02
128	GO:2000377: regulation of reactive oxygen species metabolic process	1.63E-02
129	GO:0005992: trehalose biosynthetic process	1.63E-02
130	GO:0006874: cellular calcium ion homeostasis	1.75E-02
131	GO:0009620: response to fungus	1.98E-02
132	GO:0044550: secondary metabolite biosynthetic process	2.00E-02
133	GO:0009814: defense response, incompatible interaction	2.00E-02
134	GO:0016226: iron-sulfur cluster assembly	2.00E-02
135	GO:0031348: negative regulation of defense response	2.00E-02
136	GO:0071369: cellular response to ethylene stimulus	2.12E-02
137	GO:0010227: floral organ abscission	2.12E-02
138	GO:0009624: response to nematode	2.16E-02
139	GO:0010584: pollen exine formation	2.25E-02
140	GO:0006817: phosphate ion transport	2.25E-02
141	GO:0010091: trichome branching	2.25E-02
142	GO:0009561: megagametogenesis	2.25E-02
143	GO:0042147: retrograde transport, endosome to Golgi	2.39E-02
144	GO:0042631: cellular response to water deprivation	2.52E-02
145	GO:0042391: regulation of membrane potential	2.52E-02
146	GO:0015031: protein transport	2.63E-02
147	GO:0008360: regulation of cell shape	2.66E-02
148	GO:0009958: positive gravitropism	2.66E-02
149	GO:0071472: cellular response to salt stress	2.66E-02
150	GO:0006520: cellular amino acid metabolic process	2.66E-02
151	GO:0010197: polar nucleus fusion	2.66E-02
152	GO:0042752: regulation of circadian rhythm	2.80E-02
153	GO:0048544: recognition of pollen	2.80E-02
154	GO:0006814: sodium ion transport	2.80E-02
155	GO:0010183: pollen tube guidance	2.95E-02
156	GO:0048825: cotyledon development	2.95E-02
157	GO:0009749: response to glucose	2.95E-02
158	GO:0009851: auxin biosynthetic process	2.95E-02
159	GO:0002229: defense response to oomycetes	3.09E-02
160	GO:0000302: response to reactive oxygen species	3.09E-02
161	GO:0006891: intra-Golgi vesicle-mediated transport	3.09E-02
162	GO:0006635: fatty acid beta-oxidation	3.09E-02
163	GO:0009630: gravitropism	3.24E-02
164	GO:0030163: protein catabolic process	3.39E-02
165	GO:0010252: auxin homeostasis	3.55E-02
166	GO:0006464: cellular protein modification process	3.55E-02
167	GO:0040008: regulation of growth	3.57E-02
168	GO:0051607: defense response to virus	3.86E-02
169	GO:0009615: response to virus	4.02E-02
170	GO:0016311: dephosphorylation	4.68E-02
171	GO:0016049: cell growth	4.68E-02
172	GO:0009817: defense response to fungus, incompatible interaction	4.85E-02

Rank	GO Term	Adjusted P value
1	GO:0050269: coniferyl-aldehyde dehydrogenase activity	0.00E+00
2	GO:0008117: sphinganine-1-phosphate aldolase activity	0.00E+00
3	GO:0047720: indoleacetaldoxime dehydratase activity	0.00E+00
4	GO:0016312: inositol bisphosphate phosphatase activity	0.00E+00
5	GO:0004674: protein serine/threonine kinase activity	8.88E-11
6	GO:0016301: kinase activity	1.92E-07
7	GO:0005524: ATP binding	2.35E-05
8	GO:0005516: calmodulin binding	5.37E-05
9	GO:0005388: calcium-transporting ATPase activity	5.85E-05
10	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	1.93E-04
11	GO:0004364: glutathione transferase activity	2.27E-04
12	GO:0035614: snRNA stem-loop binding	3.09E-04
13	GO:0033984: indole-3-glycerol-phosphate lyase activity	3.09E-04
14	GO:0080023: 3R-hydroxyacyl-CoA dehydratase activity	3.09E-04
15	GO:0010285: L,L-diaminopimelate aminotransferase activity	3.09E-04
16	GO:0004568: chitinase activity	6.45E-04
17	GO:0042937: tripeptide transporter activity	6.76E-04
18	GO:0004385: guanylate kinase activity	6.76E-04
19	GO:0004129: cytochrome-c oxidase activity	7.44E-04
20	GO:0001664: G-protein coupled receptor binding	1.10E-03
21	GO:0003854: 3-beta-hydroxy-delta5-steroid dehydrogenase activity	1.10E-03
22	GO:0000975: regulatory region DNA binding	1.10E-03
23	GO:0004441: inositol-1,4-bisphosphate 1-phosphatase activity	1.10E-03
24	GO:0031683: G-protein beta/gamma-subunit complex binding	1.10E-03
25	GO:0004383: guanylate cyclase activity	1.10E-03
26	GO:0008061: chitin binding	1.21E-03
27	GO:0004190: aspartic-type endopeptidase activity	1.21E-03
28	GO:0004351: glutamate decarboxylase activity	1.57E-03
29	GO:0035529: NADH pyrophosphatase activity	1.57E-03
30	GO:0004834: tryptophan synthase activity	2.11E-03
31	GO:0042936: dipeptide transporter activity	2.11E-03
32	GO:0015369: calcium:proton antiporter activity	2.11E-03
33	GO:0003995: acyl-CoA dehydrogenase activity	2.11E-03
34	GO:0010279: indole-3-acetic acid amido synthetase activity	2.11E-03
35	GO:0015368: calcium:cation antiporter activity	2.11E-03
36	GO:0030246: carbohydrate binding	2.53E-03
37	GO:0045431: flavonol synthase activity	2.69E-03
38	GO:0003997: acyl-CoA oxidase activity	2.69E-03
39	GO:0005496: steroid binding	2.69E-03
40	GO:0031386: protein tag	2.69E-03
41	GO:0047631: ADP-ribose diphosphatase activity	2.69E-03
42	GO:0004526: ribonuclease P activity	3.32E-03
43	GO:0000210: NAD+ diphosphatase activity	3.32E-03
44	GO:0004029: aldehyde dehydrogenase (NAD) activity	3.32E-03
45	GO:0016615: malate dehydrogenase activity	3.32E-03
46	GO:0050660: flavin adenine dinucleotide binding	3.79E-03
47	GO:0051920: peroxiredoxin activity	4.00E-03
48	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	4.00E-03
49	GO:0004012: phospholipid-translocating ATPase activity	4.00E-03
50	GO:0030060: L-malate dehydrogenase activity	4.00E-03
51	GO:0004602: glutathione peroxidase activity	4.00E-03
52	GO:0004656: procollagen-proline 4-dioxygenase activity	4.00E-03
53	GO:0008113: peptide-methionine (S)-S-oxide reductase activity	4.00E-03
54	GO:0004143: diacylglycerol kinase activity	4.72E-03
55	GO:0016831: carboxy-lyase activity	4.72E-03
56	GO:0008320: protein transmembrane transporter activity	4.72E-03
57	GO:0005509: calcium ion binding	4.84E-03
58	GO:0016209: antioxidant activity	5.48E-03
59	GO:0004033: aldo-keto reductase (NADP) activity	5.48E-03
60	GO:0015491: cation:cation antiporter activity	5.48E-03
61	GO:0030170: pyridoxal phosphate binding	5.94E-03
62	GO:0030247: polysaccharide binding	6.18E-03
63	GO:0004683: calmodulin-dependent protein kinase activity	6.18E-03
64	GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	6.23E-03
65	GO:0003843: 1,3-beta-D-glucan synthase activity	6.28E-03
66	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	6.51E-03
67	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	7.18E-03
68	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	7.93E-03
69	GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity	8.01E-03
70	GO:0009055: electron carrier activity	8.47E-03
71	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	8.69E-03
72	GO:0008171: O-methyltransferase activity	8.92E-03
73	GO:0008047: enzyme activator activity	8.92E-03
74	GO:0004713: protein tyrosine kinase activity	8.92E-03
75	GO:0008794: arsenate reductase (glutaredoxin) activity	9.88E-03
76	GO:0008559: xenobiotic-transporting ATPase activity	9.88E-03
77	GO:0005262: calcium channel activity	1.19E-02
78	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	1.19E-02
79	GO:0008168: methyltransferase activity	1.30E-02
80	GO:0020037: heme binding	1.38E-02
81	GO:0030552: cAMP binding	1.40E-02
82	GO:0004867: serine-type endopeptidase inhibitor activity	1.40E-02
83	GO:0030553: cGMP binding	1.40E-02
84	GO:0031418: L-ascorbic acid binding	1.63E-02
85	GO:0003954: NADH dehydrogenase activity	1.63E-02
86	GO:0008134: transcription factor binding	1.63E-02
87	GO:0005506: iron ion binding	1.70E-02
88	GO:0005216: ion channel activity	1.75E-02
89	GO:0008233: peptidase activity	1.76E-02
90	GO:0004298: threonine-type endopeptidase activity	1.87E-02
91	GO:0061630: ubiquitin protein ligase activity	1.92E-02
92	GO:0015035: protein disulfide oxidoreductase activity	2.23E-02
93	GO:0016746: transferase activity, transferring acyl groups	2.23E-02
94	GO:0004499: N,N-dimethylaniline monooxygenase activity	2.25E-02
95	GO:0004871: signal transducer activity	2.39E-02
96	GO:0043565: sequence-specific DNA binding	2.47E-02
97	GO:0030551: cyclic nucleotide binding	2.52E-02
98	GO:0005249: voltage-gated potassium channel activity	2.52E-02
99	GO:0019825: oxygen binding	3.05E-02
100	GO:0008565: protein transporter activity	3.24E-02
101	GO:0004197: cysteine-type endopeptidase activity	3.24E-02
102	GO:0008483: transaminase activity	3.70E-02
103	GO:0051213: dioxygenase activity	4.02E-02
104	GO:0009931: calcium-dependent protein serine/threonine kinase activity	4.35E-02

Rank	GO Term	Adjusted P value
1	GO:0005886: plasma membrane	9.87E-09
2	GO:0016021: integral component of membrane	6.46E-06
3	GO:0031304: intrinsic component of mitochondrial inner membrane	6.76E-04
4	GO:0005901: caveola	6.76E-04
5	GO:0030134: ER to Golgi transport vesicle	6.76E-04
6	GO:0005783: endoplasmic reticulum	7.56E-04
7	GO:0005829: cytosol	1.07E-03
8	GO:0005751: mitochondrial respiratory chain complex IV	1.10E-03
9	GO:0030660: Golgi-associated vesicle membrane	2.11E-03
10	GO:0071556: integral component of lumenal side of endoplasmic reticulum membrane	2.11E-03
11	GO:0016020: membrane	2.39E-03
12	GO:0005746: mitochondrial respiratory chain	2.69E-03
13	GO:0005789: endoplasmic reticulum membrane	4.45E-03
14	GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane	5.48E-03
15	GO:0019773: proteasome core complex, alpha-subunit complex	6.28E-03
16	GO:0000148: 1,3-beta-D-glucan synthase complex	6.28E-03
17	GO:0000325: plant-type vacuole	7.93E-03
18	GO:0015030: Cajal body	8.01E-03
19	GO:0005686: U2 snRNP	8.92E-03
20	GO:0005765: lysosomal membrane	9.88E-03
21	GO:0008541: proteasome regulatory particle, lid subcomplex	9.88E-03
22	GO:0005887: integral component of plasma membrane	1.21E-02
23	GO:0005764: lysosome	1.30E-02
24	GO:0000502: proteasome complex	1.52E-02
25	GO:0005839: proteasome core complex	1.87E-02
26	GO:0005770: late endosome	2.66E-02
27	GO:0009504: cell plate	2.95E-02
28	GO:0071944: cell periphery	3.39E-02
29	GO:0032580: Golgi cisterna membrane	3.55E-02
30	GO:0046658: anchored component of plasma membrane	4.93E-02