gene detail

Gene description

TAIR ID: AT5G47610

Short description: RING/U-box superfamily protein

Pathogen responsiveness: 0.54

General responsiveness: 2.43

Orthologous

Rice:

OS02G0106600

Maize: No orthologous gene

Wheat:

TAAFFX.134039.1.S1_AT

GO biological process

protein ubiquitination

GO cellular component

nucleus, integral component of membrane

GO molecular function

metal ion binding

Protein domain

Pfam	PF13639, Ring finger domain
SMART	SM00184, RING

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation

Regulator:
AT1G24260, AT2G43010

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 19 (Top10%)

click to view PPI network

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE26679_WT_GC  view
GSE56094_WT_HRPA-  view
GSE13739_WT_GO  view
GSE13739_EDS16_GO  view
GSE5686_WT_GO  view
GSE26679_EDR1_GC  view

Differentially expressed condition

28 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE12856	Col, WT, control	Col, WT, Bg h	-1.76	9.25E-07
GSE12856	Col, ataf1, control	Col, ataf1, Bg h	-1.84	4.32E-07
GSE17464	Laer, JA+Flg22 0 h	Laer, JA+Flg22 2 h	-1.65	3.71E-02
GSE17464	Laer, control	Laer, Flg22 1 h	-2.45	9.43E-04
GSE17464	Laer, control	Laer, Flg22 2 h	-1.55	3.43E-02
GSE17464	Penta, control	Penta, Flg22 2 h	-1.53	4.41E-02
GSE17500	Col, WT, control 0 h	Col, WT, PstDC3000 24 h	-1.69	3.35E-03
GSE18978	Col, WT, control 24 h	Col, WT, PsmES4326 24 h	-3.90	4.73E-09
GSE37269	Di2, WT, control	Di2, WT, TEV 21 d	1.81	2.15E-02
GSE37269	Ei2, WT, control	Ei2, WT, TEV 21 d	1.61	1.41E-02
GSE37269	St0, WT, control	St0, WT, TEV 21 d	-2.89	5.81E-06
GSE40544	Col, WT, control	Col, WT, PstDC3000 AvrRpt2	-2.47	1.32E-02
GSE40544	Col, Sid2, control	Col, Sid2, PstDC3000 AvrRpt2	-2.71	7.36E-03
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 12 h	-1.55	4.43E-10
GSE45214	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 4 h	-1.58	1.63E-06
GSE45214	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 4 h	-1.70	6.73E-07
GSE45214	Col, med16, PstDC3000 AvrRpt2 0 h	Col, med16, PstDC3000 AvrRpt2 4 h	-2.06	2.32E-08
GSE52979	Col, WT, acetone	Col, WT, acetone flg22_2 h	-2.74	2.22E-06
GSE52979	Col, WT, oxo_C14_HSL	Col, WT, oxo_C14_HSL flg22_2 h	-2.89	9.84E-07
GSE5520	Col, WT, control 7 h	Col, WT, PstDC3000 7 h	-2.23	2.90E-03
GSE56094	Col, WT, control 12 h	Col, WT, PstDC3000 12 h	-1.97	3.64E-18
GSE56094	Col, WT, control 12 h	Col, WT, hrpA- 12 h	-1.58	1.23E-11
GSE56094	Col, WT, control 13 h	Col, WT, PstDC3000 13 h	-2.25	5.84E-22
GSE56094	Col, WT, control 13 h	Col, WT, hrpA- 13 h	-1.68	4.35E-13
GSE58954	Col, WT, Psm AvrRpt2 0 h	Col, WT, Psm AvrRpt2 6 h	-2.35	2.00E-03
GSE6176	Col, WT, control 12 h	Col, WT, PstDC3000 12 h	-2.01	2.25E-06
GSE6556	Col, gh3.5, control	Col, gh3.5, PstDC3000 AvrRpt2 48 h	-2.34	2.08E-05
GSE9674	Ws-4, WT, control	Ws-4, WT, Xanthomonas strain Xcc147 90-105 min	1.91	4.06E-02