gene detail

Gene description

TAIR ID: AT5G43630

Short description: zinc knuckle (CCHC-type) family protein

Pathogen responsiveness: NA

General responsiveness: NA

Orthologous

Rice:

OS01G0775100

Maize: No orthologous gene

Wheat:

TAAFFX.120120.1.S1_AT

GO biological process

histone modification, growth, transcription elongation from RNA polymerase II promoter, regulation of transcription, DNA-templated

GO cellular component

nucleus, Cdc73/Paf1 complex

GO molecular function

RNA polymerase II C-terminal domain phosphoserine binding, DNA binding, zinc ion binding, transcription factor activity, RNA polymerase II transcription factor binding

Protein domain

Pfam	PF03126, Plus-3 domain
SMART	SM00719, Plus3
SMART	SM00343, ZnF_C2HC

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation

Regulator:
AT5G22220, AT1G24260, AT4G36990

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 3

click to view PPI network

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE56094_WT_HRPA-  view
GSE56094_WT_PSTDC3000  view

Differentially expressed condition

3 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE37269	St0, WT, control	St0, WT, TEV 21 d	-1.54	5.68E-03
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 12 h	-1.80	5.34E-12
GSE52979	Col, WT, oxo_C14_HSL	Col, WT, oxo_C14_HSL flg22_2 h	-1.75	5.22E-06