gene detail

Gene description

TAIR ID: AT5G40890

Short description: chloride channel A

Pathogen responsiveness: -0.78

General responsiveness: -0.86

Orthologous

Rice: No orthologous gene

Maize:

GRMZM2G057616

Wheat: No orthologous gene

GO biological process

nitrate transport, chloride transport, response to nitrate, chloride transmembrane transport

GO cellular component

plant-type vacuole membrane, intracellular, nucleus, chloride channel complex, integral component of membrane

GO molecular function

nitrate:proton symporter activity, protein binding, voltage-gated chloride channel activity, anion channel activity, nitrate transmembrane transporter activity

Protein domain

Pfam	PF00571, CBS domain
Pfam	PF00654, Voltage gated chloride channel
SMART	SM00116, CBS

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation

Regulator:
AT1G24260, AT5G61850

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 7

click to view PPI network

Coexpression network

GSE26679_WT_GC  view
GSE56094_WT_HRPA-  view
GSE13739_WT_GO  view
GSE13739_EDS16_GO  view
GSE5686_WT_GO  view
GSE26679_EDR1_GC  view

Differentially expressed condition

8 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE17464	Laer, control	Laer, Flg22 2 h	-1.79	1.00E-03
GSE17464	Penta, control	Penta, Flg22 2 h	-2.59	7.13E-06
GSE37269	St0, WT, control	St0, WT, TEV 21 d	-2.29	4.67E-04
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 4 h	-1.61	8.59E-07
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 8 h	-1.97	4.85E-08
GSE58954	Col, WT, Psm AvrRpt2 0 h	Col, WT, Psm AvrRpt2 6 h	-1.59	1.13E-03
GSE9674	Ws-4, AtMYB30 ox, control	Ws-4, AtMYB30 ox, Xanthomonas strain Xcc147 6 h	-2.17	5.11E-04
GSE9674	Ws-4, WT, control	Ws-4, WT, Xanthomonas strain Xcc147 6 h	-1.96	1.15E-03