Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G40890

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0042371: vitamin K biosynthetic process0.00E+00
2GO:0006399: tRNA metabolic process0.00E+00
3GO:0042593: glucose homeostasis0.00E+00
4GO:1901918: negative regulation of exoribonuclease activity0.00E+00
5GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
6GO:0016553: base conversion or substitution editing0.00E+00
7GO:0033494: ferulate metabolic process0.00E+00
8GO:1901698: response to nitrogen compound0.00E+00
9GO:2000121: regulation of removal of superoxide radicals0.00E+00
10GO:0061635: regulation of protein complex stability0.00E+00
11GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
12GO:0006412: translation1.20E-15
13GO:0042254: ribosome biogenesis6.57E-09
14GO:0032544: plastid translation5.35E-07
15GO:0009735: response to cytokinin1.52E-06
16GO:0015979: photosynthesis4.06E-06
17GO:0006833: water transport1.09E-05
18GO:0015995: chlorophyll biosynthetic process1.90E-05
19GO:0010206: photosystem II repair4.07E-05
20GO:0034220: ion transmembrane transport4.89E-05
21GO:2001141: regulation of RNA biosynthetic process6.54E-05
22GO:0080170: hydrogen peroxide transmembrane transport6.54E-05
23GO:0006810: transport2.10E-04
24GO:0042549: photosystem II stabilization2.51E-04
25GO:0009658: chloroplast organization3.96E-04
26GO:0009772: photosynthetic electron transport in photosystem II4.34E-04
27GO:0071370: cellular response to gibberellin stimulus4.45E-04
28GO:0000481: maturation of 5S rRNA4.45E-04
29GO:0042547: cell wall modification involved in multidimensional cell growth4.45E-04
30GO:1904964: positive regulation of phytol biosynthetic process4.45E-04
31GO:1902458: positive regulation of stomatal opening4.45E-04
32GO:0034337: RNA folding4.45E-04
33GO:0010729: positive regulation of hydrogen peroxide biosynthetic process4.45E-04
34GO:0000476: maturation of 4.5S rRNA4.45E-04
35GO:0046901: tetrahydrofolylpolyglutamate biosynthetic process4.45E-04
36GO:0000967: rRNA 5'-end processing4.45E-04
37GO:0070509: calcium ion import4.45E-04
38GO:0007263: nitric oxide mediated signal transduction4.45E-04
39GO:0043489: RNA stabilization4.45E-04
40GO:1904966: positive regulation of vitamin E biosynthetic process4.45E-04
41GO:0009409: response to cold5.13E-04
42GO:0010114: response to red light5.76E-04
43GO:0071482: cellular response to light stimulus6.60E-04
44GO:0045490: pectin catabolic process7.88E-04
45GO:0009793: embryo development ending in seed dormancy8.74E-04
46GO:0006779: porphyrin-containing compound biosynthetic process9.32E-04
47GO:0034755: iron ion transmembrane transport9.61E-04
48GO:0080151: positive regulation of salicylic acid mediated signaling pathway9.61E-04
49GO:1903426: regulation of reactive oxygen species biosynthetic process9.61E-04
50GO:0006521: regulation of cellular amino acid metabolic process9.61E-04
51GO:0030388: fructose 1,6-bisphosphate metabolic process9.61E-04
52GO:0034470: ncRNA processing9.61E-04
53GO:0010275: NAD(P)H dehydrogenase complex assembly9.61E-04
54GO:1902326: positive regulation of chlorophyll biosynthetic process9.61E-04
55GO:0006949: syncytium formation1.08E-03
56GO:0006782: protoporphyrinogen IX biosynthetic process1.08E-03
57GO:0006352: DNA-templated transcription, initiation1.25E-03
58GO:0009750: response to fructose1.25E-03
59GO:0010027: thylakoid membrane organization1.30E-03
60GO:0006013: mannose metabolic process1.57E-03
61GO:0015840: urea transport1.57E-03
62GO:0045493: xylan catabolic process1.57E-03
63GO:0071705: nitrogen compound transport1.57E-03
64GO:0005977: glycogen metabolic process1.57E-03
65GO:0006011: UDP-glucose metabolic process1.57E-03
66GO:0006000: fructose metabolic process1.57E-03
67GO:0006518: peptide metabolic process1.57E-03
68GO:0009826: unidimensional cell growth1.58E-03
69GO:0009725: response to hormone1.62E-03
70GO:0006094: gluconeogenesis1.62E-03
71GO:0018298: protein-chromophore linkage1.82E-03
72GO:0010207: photosystem II assembly1.83E-03
73GO:0010030: positive regulation of seed germination2.05E-03
74GO:0055085: transmembrane transport2.11E-03
75GO:0051513: regulation of monopolar cell growth2.27E-03
76GO:0009800: cinnamic acid biosynthetic process2.27E-03
77GO:0006636: unsaturated fatty acid biosynthetic process2.29E-03
78GO:0080167: response to karrikin2.48E-03
79GO:0009790: embryo development2.77E-03
80GO:0015976: carbon utilization3.05E-03
81GO:0071249: cellular response to nitrate3.05E-03
82GO:0030104: water homeostasis3.05E-03
83GO:0045727: positive regulation of translation3.05E-03
84GO:0015994: chlorophyll metabolic process3.05E-03
85GO:0009814: defense response, incompatible interaction3.37E-03
86GO:0010236: plastoquinone biosynthetic process3.90E-03
87GO:0045038: protein import into chloroplast thylakoid membrane3.90E-03
88GO:0009247: glycolipid biosynthetic process3.90E-03
89GO:0034052: positive regulation of plant-type hypersensitive response3.90E-03
90GO:0032543: mitochondrial translation3.90E-03
91GO:0009306: protein secretion4.00E-03
92GO:0032973: amino acid export4.83E-03
93GO:0000741: karyogamy4.83E-03
94GO:0010942: positive regulation of cell death4.83E-03
95GO:0006655: phosphatidylglycerol biosynthetic process4.83E-03
96GO:1902456: regulation of stomatal opening4.83E-03
97GO:0006559: L-phenylalanine catabolic process4.83E-03
98GO:0010019: chloroplast-nucleus signaling pathway5.83E-03
99GO:0042372: phylloquinone biosynthetic process5.83E-03
100GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)5.83E-03
101GO:0009626: plant-type hypersensitive response6.70E-03
102GO:0051510: regulation of unidimensional cell growth6.89E-03
103GO:0050829: defense response to Gram-negative bacterium6.89E-03
104GO:0009610: response to symbiotic fungus6.89E-03
105GO:0043090: amino acid import6.89E-03
106GO:0030497: fatty acid elongation6.89E-03
107GO:0010444: guard mother cell differentiation6.89E-03
108GO:0042545: cell wall modification7.54E-03
109GO:0009828: plant-type cell wall loosening7.59E-03
110GO:0032508: DNA duplex unwinding8.02E-03
111GO:0042255: ribosome assembly8.02E-03
112GO:2000070: regulation of response to water deprivation8.02E-03
113GO:0010492: maintenance of shoot apical meristem identity8.02E-03
114GO:0009231: riboflavin biosynthetic process8.02E-03
115GO:0052543: callose deposition in cell wall8.02E-03
116GO:0006402: mRNA catabolic process8.02E-03
117GO:0043068: positive regulation of programmed cell death8.02E-03
118GO:0006605: protein targeting8.02E-03
119GO:0019375: galactolipid biosynthetic process8.02E-03
120GO:0009657: plastid organization9.21E-03
121GO:0009699: phenylpropanoid biosynthetic process9.21E-03
122GO:0009932: cell tip growth9.21E-03
123GO:0006002: fructose 6-phosphate metabolic process9.21E-03
124GO:0042128: nitrate assimilation1.01E-02
125GO:0006783: heme biosynthetic process1.05E-02
126GO:0048507: meristem development1.05E-02
127GO:0009051: pentose-phosphate shunt, oxidative branch1.05E-02
128GO:0009821: alkaloid biosynthetic process1.05E-02
129GO:0080144: amino acid homeostasis1.05E-02
130GO:0006098: pentose-phosphate shunt1.05E-02
131GO:0010411: xyloglucan metabolic process1.07E-02
132GO:0010205: photoinhibition1.18E-02
133GO:0009299: mRNA transcription1.31E-02
134GO:0006535: cysteine biosynthetic process from serine1.31E-02
135GO:0006879: cellular iron ion homeostasis1.46E-02
136GO:0018119: peptidyl-cysteine S-nitrosylation1.46E-02
137GO:0010015: root morphogenesis1.46E-02
138GO:0000038: very long-chain fatty acid metabolic process1.46E-02
139GO:0019684: photosynthesis, light reaction1.46E-02
140GO:0009089: lysine biosynthetic process via diaminopimelate1.46E-02
141GO:0009698: phenylpropanoid metabolic process1.46E-02
142GO:0043085: positive regulation of catalytic activity1.46E-02
143GO:0009773: photosynthetic electron transport in photosystem I1.46E-02
144GO:0009651: response to salt stress1.47E-02
145GO:0009637: response to blue light1.51E-02
146GO:0007623: circadian rhythm1.57E-02
147GO:0016024: CDP-diacylglycerol biosynthetic process1.60E-02
148GO:0045037: protein import into chloroplast stroma1.60E-02
149GO:0015706: nitrate transport1.60E-02
150GO:0005983: starch catabolic process1.60E-02
151GO:0006006: glucose metabolic process1.75E-02
152GO:2000028: regulation of photoperiodism, flowering1.75E-02
153GO:0050826: response to freezing1.75E-02
154GO:0009767: photosynthetic electron transport chain1.75E-02
155GO:0005986: sucrose biosynthetic process1.75E-02
156GO:0019253: reductive pentose-phosphate cycle1.91E-02
157GO:0010143: cutin biosynthetic process1.91E-02
158GO:0009744: response to sucrose1.95E-02
159GO:0005985: sucrose metabolic process2.07E-02
160GO:0010167: response to nitrate2.07E-02
161GO:0019762: glucosinolate catabolic process2.24E-02
162GO:0010025: wax biosynthetic process2.24E-02
163GO:0005992: trehalose biosynthetic process2.41E-02
164GO:0019344: cysteine biosynthetic process2.41E-02
165GO:0000027: ribosomal large subunit assembly2.41E-02
166GO:0009664: plant-type cell wall organization2.45E-02
167GO:0009768: photosynthesis, light harvesting in photosystem I2.59E-02
168GO:0006418: tRNA aminoacylation for protein translation2.59E-02
169GO:0019915: lipid storage2.77E-02
170GO:0061077: chaperone-mediated protein folding2.77E-02
171GO:0031408: oxylipin biosynthetic process2.77E-02
172GO:0035428: hexose transmembrane transport2.95E-02
173GO:0006730: one-carbon metabolic process2.95E-02
174GO:0019748: secondary metabolic process2.95E-02
175GO:0006096: glycolytic process3.11E-02
176GO:0009831: plant-type cell wall modification involved in multidimensional cell growth3.14E-02
177GO:0006284: base-excision repair3.33E-02
178GO:0009740: gibberellic acid mediated signaling pathway3.52E-02
179GO:0009789: positive regulation of abscisic acid-activated signaling pathway3.53E-02
180GO:0005975: carbohydrate metabolic process3.59E-02
181GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway3.72E-02
182GO:0080022: primary root development3.73E-02
183GO:0042335: cuticle development3.73E-02
184GO:0042391: regulation of membrane potential3.73E-02
185GO:0000413: protein peptidyl-prolyl isomerization3.73E-02
186GO:0010087: phloem or xylem histogenesis3.73E-02
187GO:0042631: cellular response to water deprivation3.73E-02
188GO:0006396: RNA processing3.85E-02
189GO:0010197: polar nucleus fusion3.94E-02
190GO:0046323: glucose import3.94E-02
191GO:0009741: response to brassinosteroid3.94E-02
192GO:0009742: brassinosteroid mediated signaling pathway3.96E-02
193GO:0009791: post-embryonic development4.36E-02
194GO:0009749: response to glucose4.36E-02
195GO:0002229: defense response to oomycetes4.57E-02
196GO:0016132: brassinosteroid biosynthetic process4.57E-02
197GO:0000302: response to reactive oxygen species4.57E-02
198GO:0032502: developmental process4.79E-02
RankGO TermAdjusted P value
1GO:0004822: isoleucine-tRNA ligase activity0.00E+00
2GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity0.00E+00
3GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
4GO:0005222: intracellular cAMP activated cation channel activity0.00E+00
5GO:0046406: magnesium protoporphyrin IX methyltransferase activity0.00E+00
6GO:0047513: 1,2-alpha-L-fucosidase activity0.00E+00
7GO:0061634: alpha-D-xyloside xylohydrolase0.00E+00
8GO:0016754: sinapoylglucose-malate O-sinapoyltransferase activity0.00E+00
9GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity0.00E+00
10GO:0080176: xyloglucan 1,6-alpha-xylosidase activity0.00E+00
11GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
12GO:0019843: rRNA binding6.30E-26
13GO:0003735: structural constituent of ribosome3.10E-20
14GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity8.79E-06
15GO:0003755: peptidyl-prolyl cis-trans isomerase activity9.70E-06
16GO:0015250: water channel activity1.26E-05
17GO:0005528: FK506 binding1.37E-05
18GO:0001053: plastid sigma factor activity1.14E-04
19GO:0016987: sigma factor activity1.14E-04
20GO:0008266: poly(U) RNA binding1.57E-04
21GO:0019899: enzyme binding4.34E-04
22GO:0005221: intracellular cyclic nucleotide activated cation channel activity4.45E-04
23GO:0000248: C-5 sterol desaturase activity4.45E-04
24GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity4.45E-04
25GO:0046906: tetrapyrrole binding4.45E-04
26GO:0004655: porphobilinogen synthase activity4.45E-04
27GO:0015200: methylammonium transmembrane transporter activity4.45E-04
28GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water6.60E-04
29GO:0047746: chlorophyllase activity9.61E-04
30GO:0042389: omega-3 fatty acid desaturase activity9.61E-04
31GO:0004618: phosphoglycerate kinase activity9.61E-04
32GO:0004326: tetrahydrofolylpolyglutamate synthase activity9.61E-04
33GO:0043425: bHLH transcription factor binding9.61E-04
34GO:0009977: proton motive force dependent protein transmembrane transporter activity9.61E-04
35GO:0008686: 3,4-dihydroxy-2-butanone-4-phosphate synthase activity9.61E-04
36GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity9.61E-04
37GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity9.61E-04
38GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase9.61E-04
39GO:0016168: chlorophyll binding1.39E-03
40GO:0003935: GTP cyclohydrolase II activity1.57E-03
41GO:0003983: UTP:glucose-1-phosphate uridylyltransferase activity1.57E-03
42GO:0047274: galactinol-sucrose galactosyltransferase activity1.57E-03
43GO:0050734: hydroxycinnamoyltransferase activity1.57E-03
44GO:0045548: phenylalanine ammonia-lyase activity1.57E-03
45GO:0002161: aminoacyl-tRNA editing activity1.57E-03
46GO:0031072: heat shock protein binding1.62E-03
47GO:0004565: beta-galactosidase activity1.62E-03
48GO:0016851: magnesium chelatase activity2.27E-03
49GO:0035250: UDP-galactosyltransferase activity2.27E-03
50GO:0043495: protein anchor3.05E-03
51GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity3.05E-03
52GO:0046556: alpha-L-arabinofuranosidase activity3.05E-03
53GO:0015204: urea transmembrane transporter activity3.05E-03
54GO:0004659: prenyltransferase activity3.05E-03
55GO:0004345: glucose-6-phosphate dehydrogenase activity3.05E-03
56GO:0009044: xylan 1,4-beta-xylosidase activity3.05E-03
57GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity3.05E-03
58GO:0022891: substrate-specific transmembrane transporter activity3.68E-03
59GO:0030570: pectate lyase activity3.68E-03
60GO:0008725: DNA-3-methyladenine glycosylase activity3.90E-03
61GO:0008374: O-acyltransferase activity3.90E-03
62GO:0009922: fatty acid elongase activity3.90E-03
63GO:0003959: NADPH dehydrogenase activity3.90E-03
64GO:0003727: single-stranded RNA binding4.00E-03
65GO:0003756: protein disulfide isomerase activity4.00E-03
66GO:0008519: ammonium transmembrane transporter activity4.83E-03
67GO:0004332: fructose-bisphosphate aldolase activity4.83E-03
68GO:0004130: cytochrome-c peroxidase activity4.83E-03
69GO:0045330: aspartyl esterase activity5.68E-03
70GO:0005261: cation channel activity5.83E-03
71GO:0004559: alpha-mannosidase activity5.83E-03
72GO:0005242: inward rectifier potassium channel activity5.83E-03
73GO:0004124: cysteine synthase activity5.83E-03
74GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity5.83E-03
75GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds7.19E-03
76GO:0030599: pectinesterase activity7.25E-03
77GO:0004033: aldo-keto reductase (NADP) activity8.02E-03
78GO:0004564: beta-fructofuranosidase activity8.02E-03
79GO:0016597: amino acid binding8.56E-03
80GO:0008236: serine-type peptidase activity1.13E-02
81GO:0016844: strictosidine synthase activity1.18E-02
82GO:0004575: sucrose alpha-glucosidase activity1.18E-02
83GO:0005381: iron ion transmembrane transporter activity1.18E-02
84GO:0004252: serine-type endopeptidase activity1.19E-02
85GO:0004805: trehalose-phosphatase activity1.31E-02
86GO:0003729: mRNA binding1.37E-02
87GO:0000049: tRNA binding1.60E-02
88GO:0004089: carbonate dehydratase activity1.75E-02
89GO:0005262: calcium channel activity1.75E-02
90GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.91E-02
91GO:0004185: serine-type carboxypeptidase activity1.95E-02
92GO:0008146: sulfotransferase activity2.07E-02
93GO:0030552: cAMP binding2.07E-02
94GO:0030553: cGMP binding2.07E-02
95GO:0051537: 2 iron, 2 sulfur cluster binding2.11E-02
96GO:0102337: 3-oxo-cerotoyl-CoA synthase activity2.24E-02
97GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity2.24E-02
98GO:0031409: pigment binding2.24E-02
99GO:0102336: 3-oxo-arachidoyl-CoA synthase activity2.24E-02
100GO:0005216: ion channel activity2.59E-02
101GO:0015079: potassium ion transmembrane transporter activity2.59E-02
102GO:0003899: DNA-directed 5'-3' RNA polymerase activity2.63E-02
103GO:0003690: double-stranded DNA binding2.72E-02
104GO:0004650: polygalacturonase activity3.42E-02
105GO:0004812: aminoacyl-tRNA ligase activity3.53E-02
106GO:0030551: cyclic nucleotide binding3.73E-02
107GO:0051082: unfolded protein binding3.74E-02
108GO:0016746: transferase activity, transferring acyl groups3.85E-02
109GO:0010181: FMN binding4.14E-02
110GO:0005355: glucose transmembrane transporter activity4.14E-02
111GO:0050662: coenzyme binding4.14E-02
112GO:0016762: xyloglucan:xyloglucosyl transferase activity4.57E-02
113GO:0048038: quinone binding4.57E-02
RankGO TermAdjusted P value
1GO:0005943: phosphatidylinositol 3-kinase complex, class IA0.00E+00
2GO:0044391: ribosomal subunit0.00E+00
3GO:0009507: chloroplast3.71E-49
4GO:0009941: chloroplast envelope3.49E-36
5GO:0009570: chloroplast stroma1.10E-29
6GO:0009535: chloroplast thylakoid membrane3.54E-26
7GO:0009534: chloroplast thylakoid8.19E-20
8GO:0009543: chloroplast thylakoid lumen6.29E-15
9GO:0005840: ribosome6.82E-15
10GO:0009579: thylakoid7.47E-13
11GO:0009505: plant-type cell wall9.87E-07
12GO:0000311: plastid large ribosomal subunit3.71E-06
13GO:0016020: membrane4.65E-06
14GO:0031977: thylakoid lumen4.84E-06
15GO:0000312: plastid small ribosomal subunit6.60E-06
16GO:0031969: chloroplast membrane2.04E-05
17GO:0005618: cell wall2.89E-05
18GO:0009523: photosystem II7.46E-05
19GO:0030095: chloroplast photosystem II1.57E-04
20GO:0009654: photosystem II oxygen evolving complex2.87E-04
21GO:0015935: small ribosomal subunit3.27E-04
22GO:0015934: large ribosomal subunit3.33E-04
23GO:0042807: central vacuole4.34E-04
24GO:0009344: nitrite reductase complex [NAD(P)H]4.45E-04
25GO:0009547: plastid ribosome4.45E-04
26GO:0043674: columella4.45E-04
27GO:0019898: extrinsic component of membrane7.51E-04
28GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)7.90E-04
29GO:0042170: plastid membrane9.61E-04
30GO:0009295: nucleoid1.12E-03
31GO:0048046: apoplast1.35E-03
32GO:0009706: chloroplast inner membrane1.55E-03
33GO:0009509: chromoplast1.57E-03
34GO:0033281: TAT protein transport complex1.57E-03
35GO:0010007: magnesium chelatase complex1.57E-03
36GO:0005775: vacuolar lumen2.27E-03
37GO:0042646: plastid nucleoid2.27E-03
38GO:0005887: integral component of plasma membrane2.45E-03
39GO:0005774: vacuolar membrane2.85E-03
40GO:0009536: plastid3.26E-03
41GO:0031225: anchored component of membrane3.32E-03
42GO:0005773: vacuole4.36E-03
43GO:0009522: photosystem I5.44E-03
44GO:0005762: mitochondrial large ribosomal subunit5.83E-03
45GO:0016363: nuclear matrix5.83E-03
46GO:0009533: chloroplast stromal thylakoid6.89E-03
47GO:0009506: plasmodesma8.88E-03
48GO:0030529: intracellular ribonucleoprotein complex9.07E-03
49GO:0000326: protein storage vacuole9.21E-03
50GO:0005763: mitochondrial small ribosomal subunit1.05E-02
51GO:0022626: cytosolic ribosome1.24E-02
52GO:0009705: plant-type vacuole membrane1.57E-02
53GO:0032040: small-subunit processome1.60E-02
54GO:0009508: plastid chromosome1.75E-02
55GO:0019013: viral nucleocapsid1.75E-02
56GO:0030076: light-harvesting complex2.07E-02
57GO:0022627: cytosolic small ribosomal subunit2.25E-02
58GO:0046658: anchored component of plasma membrane2.25E-02
59GO:0042651: thylakoid membrane2.59E-02
60GO:0022625: cytosolic large ribosomal subunit3.80E-02
61GO:0010287: plastoglobule4.43E-02
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Gene type



Gene DE type