Gene: AT5G23120
     

Gene description


TAIR ID: AT5G23120

Short description: photosystem II stability/assembly factor, chloroplast (HCF136)

Pathogen responsiveness: -0.30

General responsiveness: 2.49

Orthologous


Rice: No orthologous gene
Maize:

GRMZM2G102838  

Wheat:

TA.18169.1.S1_X_AT  TA.4259.1.A1_X_AT  


GO biological process


photosynthesis, protein complex assembly, plastid organization, response to cytokinin, response to cadmium ion


GO cellular component


chloroplast thylakoid lumen, chloroplast, chloroplast thylakoid membrane, chloroplast photosystem II, photosystem II, chloroplast thylakoid, chloroplast stromal thylakoid, chloroplast envelope, thylakoid, chloroplast stroma, thylakoid lumen


GO molecular function


unkown


Protein domain


PfamPF14870, Photosynthesis system II assembly factor YCF48

Metabolic pathway


Not involved in metabolic pathway


KEGG pathway


Not involved in KEGG pathway


Transcriptional regulation


Regulator:
AT3G16857, AT4G16110

Target:
none

Protein-protein interaction network


The number of partners (degree) is: 4

click to view PPI network

Differentially expressed condition


17 conditions



SeriesControlTreatmentLog2FCAdj. P value
GSE18978Col, WT, control 24 hCol, WT, PsmES4326 24 h-2.681.71E-09
GSE37269Ei2, WT, controlEi2, WT, TEV 21 d-2.042.50E-03
GSE37269St0, WT, controlSt0, WT, TEV 21 d-1.892.66E-03
GSE45212Col, WT, PstDC3000 AvrRpt2 0 hCol, WT, PstDC3000 AvrRpt2 12 h-1.543.98E-08
GSE45212Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 12 h-2.369.40E-11
GSE45212Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 8 h-1.961.28E-09
GSE5520Col, WT, control 10 hCol, WT, Cor- 10 h-1.614.47E-04
GSE56094Col, WT, control 10 hCol, WT, PstDC3000 10 h-2.067.17E-09
GSE56094Col, WT, control 10 hCol, WT, hrpA- 10 h-2.021.13E-07
GSE56094Col, WT, control 11 hCol, WT, PstDC3000 11 h-1.795.04E-07
GSE56094Col, WT, control 11 hCol, WT, hrpA- 11 h-1.848.32E-07
GSE56094Col, WT, control 12 hCol, WT, PstDC3000 12 h-1.964.94E-08
GSE56094Col, WT, control 13 hCol, WT, PstDC3000 13 h-2.228.32E-10
GSE56094Col, WT, control 13 hCol, WT, hrpA- 13 h-1.671.78E-05
GSE56094Col, WT, control 8 hCol, WT, hrpA- 8 h-1.942.69E-07
GSE56094Col, WT, control 9 hCol, WT, PstDC3000 9 h-1.798.40E-07
GSE56094Col, WT, control 9 hCol, WT, hrpA- 9 h-2.191.84E-08






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