Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G23120

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006399: tRNA metabolic process0.00E+00
2GO:0045176: apical protein localization0.00E+00
3GO:0098586: cellular response to virus0.00E+00
4GO:0016553: base conversion or substitution editing0.00E+00
5GO:0015805: S-adenosyl-L-methionine transport0.00E+00
6GO:0033494: ferulate metabolic process0.00E+00
7GO:0061635: regulation of protein complex stability0.00E+00
8GO:0017009: protein-phycocyanobilin linkage0.00E+00
9GO:0042820: vitamin B6 catabolic process0.00E+00
10GO:0042821: pyridoxal biosynthetic process0.00E+00
11GO:1904966: positive regulation of vitamin E biosynthetic process0.00E+00
12GO:2001294: malonyl-CoA catabolic process0.00E+00
13GO:1904964: positive regulation of phytol biosynthetic process0.00E+00
14GO:0042493: response to drug0.00E+00
15GO:0015979: photosynthesis1.11E-14
16GO:0009773: photosynthetic electron transport in photosystem I1.84E-14
17GO:0009735: response to cytokinin6.29E-08
18GO:0010196: nonphotochemical quenching1.14E-07
19GO:1902326: positive regulation of chlorophyll biosynthetic process6.85E-06
20GO:0010027: thylakoid membrane organization7.84E-06
21GO:0018298: protein-chromophore linkage1.54E-05
22GO:0032544: plastid translation2.19E-05
23GO:0006518: peptide metabolic process2.39E-05
24GO:0042254: ribosome biogenesis4.45E-05
25GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly5.22E-05
26GO:0015976: carbon utilization9.22E-05
27GO:2000122: negative regulation of stomatal complex development9.22E-05
28GO:0010037: response to carbon dioxide9.22E-05
29GO:0019253: reductive pentose-phosphate cycle1.19E-04
30GO:0006412: translation1.37E-04
31GO:0031365: N-terminal protein amino acid modification1.43E-04
32GO:0042549: photosystem II stabilization2.05E-04
33GO:0009409: response to cold2.86E-04
34GO:0006810: transport3.66E-04
35GO:0090548: response to nitrate starvation3.92E-04
36GO:0034337: RNA folding3.92E-04
37GO:0071588: hydrogen peroxide mediated signaling pathway3.92E-04
38GO:0009443: pyridoxal 5'-phosphate salvage3.92E-04
39GO:0043489: RNA stabilization3.92E-04
40GO:1902025: nitrate import3.92E-04
41GO:0000481: maturation of 5S rRNA3.92E-04
42GO:0071277: cellular response to calcium ion3.92E-04
43GO:0033481: galacturonate biosynthetic process3.92E-04
44GO:0042371: vitamin K biosynthetic process3.92E-04
45GO:0043686: co-translational protein modification3.92E-04
46GO:0010205: photoinhibition7.75E-04
47GO:0030388: fructose 1,6-bisphosphate metabolic process8.49E-04
48GO:0010024: phytochromobilin biosynthetic process8.49E-04
49GO:0043255: regulation of carbohydrate biosynthetic process8.49E-04
50GO:0010115: regulation of abscisic acid biosynthetic process8.49E-04
51GO:0046741: transport of virus in host, tissue to tissue8.49E-04
52GO:0001736: establishment of planar polarity8.49E-04
53GO:0018119: peptidyl-cysteine S-nitrosylation1.04E-03
54GO:0009658: chloroplast organization1.20E-03
55GO:0006006: glucose metabolic process1.34E-03
56GO:0006954: inflammatory response1.38E-03
57GO:0090391: granum assembly1.38E-03
58GO:0006000: fructose metabolic process1.38E-03
59GO:0006788: heme oxidation1.38E-03
60GO:0006753: nucleoside phosphate metabolic process1.38E-03
61GO:0071492: cellular response to UV-A1.38E-03
62GO:0010143: cutin biosynthetic process1.51E-03
63GO:0006636: unsaturated fatty acid biosynthetic process1.89E-03
64GO:0009152: purine ribonucleotide biosynthetic process1.99E-03
65GO:0046653: tetrahydrofolate metabolic process1.99E-03
66GO:0009800: cinnamic acid biosynthetic process1.99E-03
67GO:0009650: UV protection1.99E-03
68GO:0043572: plastid fission1.99E-03
69GO:2001141: regulation of RNA biosynthetic process1.99E-03
70GO:0009768: photosynthesis, light harvesting in photosystem I2.31E-03
71GO:0031408: oxylipin biosynthetic process2.54E-03
72GO:0016998: cell wall macromolecule catabolic process2.54E-03
73GO:0071486: cellular response to high light intensity2.67E-03
74GO:0009765: photosynthesis, light harvesting2.67E-03
75GO:0031122: cytoplasmic microtubule organization2.67E-03
76GO:0045727: positive regulation of translation2.67E-03
77GO:0015994: chlorophyll metabolic process2.67E-03
78GO:0006546: glycine catabolic process2.67E-03
79GO:0009644: response to high light intensity2.94E-03
80GO:0009306: protein secretion3.30E-03
81GO:0009107: lipoate biosynthetic process3.42E-03
82GO:0080110: sporopollenin biosynthetic process3.42E-03
83GO:0006564: L-serine biosynthetic process3.42E-03
84GO:0010236: plastoquinone biosynthetic process3.42E-03
85GO:0042335: cuticle development3.87E-03
86GO:0048827: phyllome development4.23E-03
87GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway4.23E-03
88GO:0000470: maturation of LSU-rRNA4.23E-03
89GO:0009913: epidermal cell differentiation4.23E-03
90GO:0010190: cytochrome b6f complex assembly4.23E-03
91GO:0016554: cytidine to uridine editing4.23E-03
92GO:0010337: regulation of salicylic acid metabolic process4.23E-03
93GO:0006559: L-phenylalanine catabolic process4.23E-03
94GO:0006561: proline biosynthetic process4.23E-03
95GO:0010019: chloroplast-nucleus signaling pathway5.09E-03
96GO:0042372: phylloquinone biosynthetic process5.09E-03
97GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)5.09E-03
98GO:0010189: vitamin E biosynthetic process5.09E-03
99GO:0000302: response to reactive oxygen species5.15E-03
100GO:0009395: phospholipid catabolic process6.02E-03
101GO:0009772: photosynthetic electron transport in photosystem II6.02E-03
102GO:0015937: coenzyme A biosynthetic process6.02E-03
103GO:0009645: response to low light intensity stimulus6.02E-03
104GO:0010444: guard mother cell differentiation6.02E-03
105GO:0006400: tRNA modification6.02E-03
106GO:0050829: defense response to Gram-negative bacterium6.02E-03
107GO:0030091: protein repair7.00E-03
108GO:0008610: lipid biosynthetic process7.00E-03
109GO:0006605: protein targeting7.00E-03
110GO:0009704: de-etiolation7.00E-03
111GO:0046620: regulation of organ growth7.00E-03
112GO:0032508: DNA duplex unwinding7.00E-03
113GO:0017004: cytochrome complex assembly8.03E-03
114GO:0006002: fructose 6-phosphate metabolic process8.03E-03
115GO:0071482: cellular response to light stimulus8.03E-03
116GO:0042128: nitrate assimilation8.34E-03
117GO:0010411: xyloglucan metabolic process8.80E-03
118GO:0015995: chlorophyll biosynthetic process8.80E-03
119GO:0009051: pentose-phosphate shunt, oxidative branch9.12E-03
120GO:0010206: photosystem II repair9.12E-03
121GO:0090333: regulation of stomatal closure9.12E-03
122GO:0000373: Group II intron splicing9.12E-03
123GO:1900865: chloroplast RNA modification1.03E-02
124GO:0010119: regulation of stomatal movement1.13E-02
125GO:0009631: cold acclimation1.13E-02
126GO:0006032: chitin catabolic process1.14E-02
127GO:0019538: protein metabolic process1.14E-02
128GO:0009688: abscisic acid biosynthetic process1.14E-02
129GO:0048829: root cap development1.14E-02
130GO:0032259: methylation1.22E-02
131GO:0009637: response to blue light1.24E-02
132GO:0048765: root hair cell differentiation1.27E-02
133GO:0000038: very long-chain fatty acid metabolic process1.27E-02
134GO:0009073: aromatic amino acid family biosynthetic process1.27E-02
135GO:0043085: positive regulation of catalytic activity1.27E-02
136GO:0006352: DNA-templated transcription, initiation1.27E-02
137GO:0009750: response to fructose1.27E-02
138GO:0055114: oxidation-reduction process1.29E-02
139GO:0034599: cellular response to oxidative stress1.30E-02
140GO:0016024: CDP-diacylglycerol biosynthetic process1.40E-02
141GO:0006839: mitochondrial transport1.42E-02
142GO:0055085: transmembrane transport1.44E-02
143GO:0006094: gluconeogenesis1.53E-02
144GO:0009767: photosynthetic electron transport chain1.53E-02
145GO:0005986: sucrose biosynthetic process1.53E-02
146GO:0010628: positive regulation of gene expression1.53E-02
147GO:0010229: inflorescence development1.53E-02
148GO:0009926: auxin polar transport1.60E-02
149GO:0010114: response to red light1.60E-02
150GO:0010540: basipetal auxin transport1.66E-02
151GO:0010207: photosystem II assembly1.66E-02
152GO:0010020: chloroplast fission1.66E-02
153GO:0042546: cell wall biogenesis1.67E-02
154GO:0010053: root epidermal cell differentiation1.81E-02
155GO:0009225: nucleotide-sugar metabolic process1.81E-02
156GO:0009825: multidimensional cell growth1.81E-02
157GO:0010167: response to nitrate1.81E-02
158GO:0005985: sucrose metabolic process1.81E-02
159GO:0019762: glucosinolate catabolic process1.95E-02
160GO:0006487: protein N-linked glycosylation2.10E-02
161GO:0000027: ribosomal large subunit assembly2.10E-02
162GO:0009809: lignin biosynthetic process2.16E-02
163GO:0051302: regulation of cell division2.25E-02
164GO:0009695: jasmonic acid biosynthetic process2.25E-02
165GO:0007017: microtubule-based process2.25E-02
166GO:0061077: chaperone-mediated protein folding2.41E-02
167GO:0003333: amino acid transmembrane transport2.41E-02
168GO:0006096: glycolytic process2.56E-02
169GO:0030245: cellulose catabolic process2.57E-02
170GO:0009411: response to UV2.73E-02
171GO:0080167: response to karrikin2.80E-02
172GO:0010584: pollen exine formation2.90E-02
173GO:0042127: regulation of cell proliferation2.90E-02
174GO:0019722: calcium-mediated signaling2.90E-02
175GO:0009561: megagametogenesis2.90E-02
176GO:0009416: response to light stimulus3.05E-02
177GO:0009611: response to wounding3.15E-02
178GO:0042742: defense response to bacterium3.18E-02
179GO:0000413: protein peptidyl-prolyl isomerization3.25E-02
180GO:0009958: positive gravitropism3.42E-02
181GO:0006662: glycerol ether metabolic process3.42E-02
182GO:0010182: sugar mediated signaling pathway3.42E-02
183GO:0045454: cell redox homeostasis3.51E-02
184GO:0048544: recognition of pollen3.61E-02
185GO:0015986: ATP synthesis coupled proton transport3.61E-02
186GO:0048825: cotyledon development3.79E-02
187GO:0006869: lipid transport3.93E-02
188GO:0071554: cell wall organization or biogenesis3.98E-02
189GO:0009630: gravitropism4.17E-02
190GO:1901657: glycosyl compound metabolic process4.36E-02
191GO:0042744: hydrogen peroxide catabolic process4.38E-02
192GO:0019760: glucosinolate metabolic process4.56E-02
193GO:0007267: cell-cell signaling4.76E-02
194GO:0006633: fatty acid biosynthetic process4.82E-02
195GO:0009753: response to jasmonic acid4.93E-02
RankGO TermAdjusted P value
1GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity0.00E+00
2GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
3GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
4GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity0.00E+00
5GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity0.00E+00
6GO:0010301: xanthoxin dehydrogenase activity0.00E+00
7GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity0.00E+00
8GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
9GO:0019843: rRNA binding1.36E-12
10GO:0005528: FK506 binding2.35E-07
11GO:0016168: chlorophyll binding3.89E-07
12GO:0003755: peptidyl-prolyl cis-trans isomerase activity5.57E-06
13GO:0022891: substrate-specific transmembrane transporter activity2.05E-05
14GO:0003735: structural constituent of ribosome2.15E-05
15GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor9.22E-05
16GO:0043495: protein anchor9.22E-05
17GO:0008266: poly(U) RNA binding1.19E-04
18GO:0019899: enzyme binding3.58E-04
19GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity3.92E-04
20GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity3.92E-04
21GO:0010945: CoA pyrophosphatase activity3.92E-04
22GO:0009496: plastoquinol--plastocyanin reductase activity3.92E-04
23GO:0008568: microtubule-severing ATPase activity3.92E-04
24GO:0046028: electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity3.92E-04
25GO:0004321: fatty-acyl-CoA synthase activity3.92E-04
26GO:0042586: peptide deformylase activity3.92E-04
27GO:0045485: omega-6 fatty acid desaturase activity3.92E-04
28GO:0004033: aldo-keto reductase (NADP) activity4.48E-04
29GO:0047746: chlorophyllase activity8.49E-04
30GO:0004618: phosphoglycerate kinase activity8.49E-04
31GO:0004617: phosphoglycerate dehydrogenase activity8.49E-04
32GO:0018708: thiol S-methyltransferase activity8.49E-04
33GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity8.49E-04
34GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity8.49E-04
35GO:0016630: protochlorophyllide reductase activity8.49E-04
36GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity8.49E-04
37GO:0016788: hydrolase activity, acting on ester bonds1.24E-03
38GO:0004089: carbonate dehydratase activity1.34E-03
39GO:0031072: heat shock protein binding1.34E-03
40GO:0004565: beta-galactosidase activity1.34E-03
41GO:0070402: NADPH binding1.38E-03
42GO:0008864: formyltetrahydrofolate deformylase activity1.38E-03
43GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor1.38E-03
44GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity1.38E-03
45GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity1.38E-03
46GO:0045158: electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity1.38E-03
47GO:0050734: hydroxycinnamoyltransferase activity1.38E-03
48GO:0016992: lipoate synthase activity1.38E-03
49GO:0045548: phenylalanine ammonia-lyase activity1.38E-03
50GO:0016742: hydroxymethyl-, formyl- and related transferase activity1.38E-03
51GO:0031409: pigment binding1.89E-03
52GO:0001872: (1->3)-beta-D-glucan binding1.99E-03
53GO:0008893: guanosine-3',5'-bis(diphosphate) 3'-diphosphatase activity1.99E-03
54GO:0003830: beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity1.99E-03
55GO:0016851: magnesium chelatase activity1.99E-03
56GO:0004659: prenyltransferase activity2.67E-03
57GO:0001053: plastid sigma factor activity2.67E-03
58GO:0010011: auxin binding2.67E-03
59GO:0004345: glucose-6-phosphate dehydrogenase activity2.67E-03
60GO:0016987: sigma factor activity2.67E-03
61GO:0010328: auxin influx transmembrane transporter activity2.67E-03
62GO:0050378: UDP-glucuronate 4-epimerase activity2.67E-03
63GO:0042277: peptide binding2.67E-03
64GO:0004392: heme oxygenase (decyclizing) activity2.67E-03
65GO:0051537: 2 iron, 2 sulfur cluster binding2.94E-03
66GO:0003959: NADPH dehydrogenase activity3.42E-03
67GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity4.23E-03
68GO:0008200: ion channel inhibitor activity4.23E-03
69GO:0000210: NAD+ diphosphatase activity4.23E-03
70GO:0016208: AMP binding4.23E-03
71GO:0004130: cytochrome-c peroxidase activity4.23E-03
72GO:0004366: glycerol-3-phosphate O-acyltransferase activity4.23E-03
73GO:0016688: L-ascorbate peroxidase activity4.23E-03
74GO:0050662: coenzyme binding4.49E-03
75GO:0008168: methyltransferase activity4.89E-03
76GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds4.90E-03
77GO:0051920: peroxiredoxin activity5.09E-03
78GO:0033743: peptide-methionine (R)-S-oxide reductase activity5.09E-03
79GO:0004723: calcium-dependent protein serine/threonine phosphatase activity5.09E-03
80GO:0048038: quinone binding5.15E-03
81GO:0016762: xyloglucan:xyloglucosyl transferase activity5.15E-03
82GO:0008235: metalloexopeptidase activity6.02E-03
83GO:0016746: transferase activity, transferring acyl groups6.35E-03
84GO:0016209: antioxidant activity7.00E-03
85GO:0052747: sinapyl alcohol dehydrogenase activity7.00E-03
86GO:0016597: amino acid binding7.05E-03
87GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water8.03E-03
88GO:0016798: hydrolase activity, acting on glycosyl bonds8.80E-03
89GO:0030247: polysaccharide binding8.80E-03
90GO:0016207: 4-coumarate-CoA ligase activity9.12E-03
91GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity9.76E-03
92GO:0004871: signal transducer activity1.02E-02
93GO:0047617: acyl-CoA hydrolase activity1.03E-02
94GO:0004222: metalloendopeptidase activity1.08E-02
95GO:0030234: enzyme regulator activity1.14E-02
96GO:0004568: chitinase activity1.14E-02
97GO:0008047: enzyme activator activity1.14E-02
98GO:0004177: aminopeptidase activity1.27E-02
99GO:0015386: potassium:proton antiporter activity1.27E-02
100GO:0003993: acid phosphatase activity1.30E-02
101GO:0046872: metal ion binding1.40E-02
102GO:0045551: cinnamyl-alcohol dehydrogenase activity1.40E-02
103GO:0050661: NADP binding1.42E-02
104GO:0004022: alcohol dehydrogenase (NAD) activity1.53E-02
105GO:0003723: RNA binding1.64E-02
106GO:0015293: symporter activity1.80E-02
107GO:0016491: oxidoreductase activity1.92E-02
108GO:0051287: NAD binding1.94E-02
109GO:0102336: 3-oxo-arachidoyl-CoA synthase activity1.95E-02
110GO:0102337: 3-oxo-cerotoyl-CoA synthase activity1.95E-02
111GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity1.95E-02
112GO:0043424: protein histidine kinase binding2.25E-02
113GO:0015079: potassium ion transmembrane transporter activity2.25E-02
114GO:0030570: pectate lyase activity2.73E-02
115GO:0008810: cellulase activity2.73E-02
116GO:0005509: calcium ion binding2.78E-02
117GO:0047134: protein-disulfide reductase activity3.07E-02
118GO:0051082: unfolded protein binding3.08E-02
119GO:0046933: proton-transporting ATP synthase activity, rotational mechanism3.42E-02
120GO:0004791: thioredoxin-disulfide reductase activity3.61E-02
121GO:0016829: lyase activity4.17E-02
122GO:0000156: phosphorelay response regulator activity4.36E-02
123GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor4.36E-02
124GO:0016759: cellulose synthase activity4.56E-02
125GO:0016791: phosphatase activity4.56E-02
126GO:0016787: hydrolase activity4.70E-02
127GO:0005200: structural constituent of cytoskeleton4.76E-02
128GO:0009055: electron carrier activity4.93E-02
129GO:0016413: O-acetyltransferase activity4.96E-02
RankGO TermAdjusted P value
1GO:0044391: ribosomal subunit0.00E+00
2GO:0009507: chloroplast1.89E-59
3GO:0009535: chloroplast thylakoid membrane4.75E-43
4GO:0009941: chloroplast envelope1.41E-25
5GO:0009579: thylakoid4.02E-22
6GO:0009570: chloroplast stroma4.31E-22
7GO:0009534: chloroplast thylakoid2.89E-18
8GO:0009543: chloroplast thylakoid lumen1.66E-15
9GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)4.79E-11
10GO:0031977: thylakoid lumen5.13E-09
11GO:0048046: apoplast2.31E-07
12GO:0009523: photosystem II2.46E-06
13GO:0005840: ribosome5.09E-06
14GO:0010319: stromule5.80E-06
15GO:0009654: photosystem II oxygen evolving complex1.14E-05
16GO:0042651: thylakoid membrane1.14E-05
17GO:0019898: extrinsic component of membrane5.20E-05
18GO:0031969: chloroplast membrane7.77E-05
19GO:0009547: plastid ribosome3.92E-04
20GO:0009782: photosystem I antenna complex3.92E-04
21GO:0009515: granal stacked thylakoid3.92E-04
22GO:0010007: magnesium chelatase complex1.38E-03
23GO:0010287: plastoglobule1.50E-03
24GO:0030095: chloroplast photosystem II1.51E-03
25GO:0000312: plastid small ribosomal subunit1.51E-03
26GO:0030076: light-harvesting complex1.70E-03
27GO:0015630: microtubule cytoskeleton1.99E-03
28GO:0009512: cytochrome b6f complex3.42E-03
29GO:0016020: membrane3.86E-03
30GO:0046658: anchored component of plasma membrane4.09E-03
31GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)4.23E-03
32GO:0009986: cell surface6.02E-03
33GO:0009706: chloroplast inner membrane6.12E-03
34GO:0005778: peroxisomal membrane6.64E-03
35GO:0016021: integral component of membrane6.85E-03
36GO:0030529: intracellular ribonucleoprotein complex7.46E-03
37GO:0008180: COP9 signalosome9.12E-03
38GO:0015934: large ribosomal subunit1.13E-02
39GO:0005618: cell wall1.36E-02
40GO:0000311: plastid large ribosomal subunit1.40E-02
41GO:0032040: small-subunit processome1.40E-02
42GO:0015935: small ribosomal subunit2.41E-02
43GO:0005770: late endosome3.42E-02
44GO:0009522: photosystem I3.61E-02
45GO:0005777: peroxisome3.73E-02
46GO:0032580: Golgi cisterna membrane4.56E-02
47GO:0009295: nucleoid4.76E-02
Gene type



Gene DE type