Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G23120

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
2GO:0016553: base conversion or substitution editing0.00E+00
3GO:0005996: monosaccharide metabolic process0.00E+00
4GO:0090042: tubulin deacetylation0.00E+00
5GO:0006399: tRNA metabolic process0.00E+00
6GO:0061157: mRNA destabilization0.00E+00
7GO:1901918: negative regulation of exoribonuclease activity0.00E+00
8GO:0033494: ferulate metabolic process0.00E+00
9GO:0061635: regulation of protein complex stability0.00E+00
10GO:0015979: photosynthesis8.01E-14
11GO:0009773: photosynthetic electron transport in photosystem I7.07E-10
12GO:0009768: photosynthesis, light harvesting in photosystem I6.23E-07
13GO:0006094: gluconeogenesis5.73E-06
14GO:0042549: photosystem II stabilization5.83E-06
15GO:0010207: photosystem II assembly7.56E-06
16GO:0030388: fructose 1,6-bisphosphate metabolic process9.54E-06
17GO:0009735: response to cytokinin1.43E-05
18GO:0015995: chlorophyll biosynthetic process2.20E-05
19GO:0018298: protein-chromophore linkage2.82E-05
20GO:0006000: fructose metabolic process3.26E-05
21GO:0010206: photosystem II repair4.50E-05
22GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly7.03E-05
23GO:0080170: hydrogen peroxide transmembrane transport7.03E-05
24GO:0006546: glycine catabolic process1.23E-04
25GO:0010037: response to carbon dioxide1.23E-04
26GO:0015976: carbon utilization1.23E-04
27GO:0045727: positive regulation of translation1.23E-04
28GO:0015994: chlorophyll metabolic process1.23E-04
29GO:2000122: negative regulation of stomatal complex development1.23E-04
30GO:0009409: response to cold1.98E-04
31GO:0006810: transport2.61E-04
32GO:0010019: chloroplast-nucleus signaling pathway3.59E-04
33GO:0010196: nonphotochemical quenching4.62E-04
34GO:0043489: RNA stabilization4.64E-04
35GO:0043953: protein transport by the Tat complex4.64E-04
36GO:0010480: microsporocyte differentiation4.64E-04
37GO:0000481: maturation of 5S rRNA4.64E-04
38GO:0065002: intracellular protein transmembrane transport4.64E-04
39GO:0010028: xanthophyll cycle4.64E-04
40GO:0034337: RNA folding4.64E-04
41GO:0071588: hydrogen peroxide mediated signaling pathway4.64E-04
42GO:0010729: positive regulation of hydrogen peroxide biosynthetic process4.64E-04
43GO:0000476: maturation of 4.5S rRNA4.64E-04
44GO:0000967: rRNA 5'-end processing4.64E-04
45GO:0019646: aerobic electron transport chain4.64E-04
46GO:0008152: metabolic process5.04E-04
47GO:0034220: ion transmembrane transport6.16E-04
48GO:0010114: response to red light6.35E-04
49GO:0032544: plastid translation7.02E-04
50GO:0006002: fructose 6-phosphate metabolic process7.02E-04
51GO:0071482: cellular response to light stimulus7.02E-04
52GO:0009644: response to high light intensity7.16E-04
53GO:0010205: photoinhibition9.90E-04
54GO:1900871: chloroplast mRNA modification1.00E-03
55GO:0034755: iron ion transmembrane transport1.00E-03
56GO:0016122: xanthophyll metabolic process1.00E-03
57GO:0080151: positive regulation of salicylic acid mediated signaling pathway1.00E-03
58GO:0006521: regulation of cellular amino acid metabolic process1.00E-03
59GO:0034470: ncRNA processing1.00E-03
60GO:0006096: glycolytic process1.29E-03
61GO:0018119: peptidyl-cysteine S-nitrosylation1.33E-03
62GO:0006518: peptide metabolic process1.63E-03
63GO:0006013: mannose metabolic process1.63E-03
64GO:0006696: ergosterol biosynthetic process1.63E-03
65GO:0045493: xylan catabolic process1.63E-03
66GO:2001295: malonyl-CoA biosynthetic process1.63E-03
67GO:0009718: anthocyanin-containing compound biosynthetic process1.73E-03
68GO:0009767: photosynthetic electron transport chain1.73E-03
69GO:0005986: sucrose biosynthetic process1.73E-03
70GO:0019253: reductive pentose-phosphate cycle1.95E-03
71GO:0010143: cutin biosynthetic process1.95E-03
72GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity2.37E-03
73GO:1901332: negative regulation of lateral root development2.37E-03
74GO:2001141: regulation of RNA biosynthetic process2.37E-03
75GO:0051513: regulation of monopolar cell growth2.37E-03
76GO:0071484: cellular response to light intensity2.37E-03
77GO:0006833: water transport2.44E-03
78GO:0009637: response to blue light2.67E-03
79GO:0006542: glutamine biosynthetic process3.18E-03
80GO:0019676: ammonia assimilation cycle3.18E-03
81GO:0010023: proanthocyanidin biosynthetic process3.18E-03
82GO:0019464: glycine decarboxylation via glycine cleavage system3.18E-03
83GO:0030104: water homeostasis3.18E-03
84GO:0007623: circadian rhythm3.95E-03
85GO:0045490: pectin catabolic process3.95E-03
86GO:0045038: protein import into chloroplast thylakoid membrane4.08E-03
87GO:0000413: protein peptidyl-prolyl isomerization5.00E-03
88GO:0042631: cellular response to water deprivation5.00E-03
89GO:0006086: acetyl-CoA biosynthetic process from pyruvate5.05E-03
90GO:0000741: karyogamy5.05E-03
91GO:0010256: endomembrane system organization5.05E-03
92GO:0000470: maturation of LSU-rRNA5.05E-03
93GO:1902456: regulation of stomatal opening5.05E-03
94GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)6.09E-03
95GO:0042372: phylloquinone biosynthetic process6.09E-03
96GO:0055114: oxidation-reduction process6.25E-03
97GO:0000302: response to reactive oxygen species6.67E-03
98GO:0009645: response to low light intensity stimulus7.20E-03
99GO:0050829: defense response to Gram-negative bacterium7.20E-03
100GO:0009772: photosynthetic electron transport in photosystem II7.20E-03
101GO:0048437: floral organ development7.20E-03
102GO:0009658: chloroplast organization7.68E-03
103GO:0009850: auxin metabolic process8.39E-03
104GO:0032508: DNA duplex unwinding8.39E-03
105GO:0010492: maintenance of shoot apical meristem identity8.39E-03
106GO:0006402: mRNA catabolic process8.39E-03
107GO:0009657: plastid organization9.63E-03
108GO:0042128: nitrate assimilation1.08E-02
109GO:0048507: meristem development1.09E-02
110GO:0009051: pentose-phosphate shunt, oxidative branch1.09E-02
111GO:0006098: pentose-phosphate shunt1.09E-02
112GO:0090305: nucleic acid phosphodiester bond hydrolysis1.09E-02
113GO:0009817: defense response to fungus, incompatible interaction1.27E-02
114GO:0042744: hydrogen peroxide catabolic process1.34E-02
115GO:0006949: syncytium formation1.37E-02
116GO:0010218: response to far red light1.40E-02
117GO:0045454: cell redox homeostasis1.40E-02
118GO:0009631: cold acclimation1.47E-02
119GO:0010119: regulation of stomatal movement1.47E-02
120GO:0009089: lysine biosynthetic process via diaminopimelate1.52E-02
121GO:0043085: positive regulation of catalytic activity1.52E-02
122GO:0006879: cellular iron ion homeostasis1.52E-02
123GO:0006352: DNA-templated transcription, initiation1.52E-02
124GO:0000272: polysaccharide catabolic process1.52E-02
125GO:0009750: response to fructose1.52E-02
126GO:0048229: gametophyte development1.52E-02
127GO:0010015: root morphogenesis1.52E-02
128GO:0009698: phenylpropanoid metabolic process1.52E-02
129GO:0019684: photosynthesis, light reaction1.52E-02
130GO:0005983: starch catabolic process1.68E-02
131GO:0016024: CDP-diacylglycerol biosynthetic process1.68E-02
132GO:0034599: cellular response to oxidative stress1.68E-02
133GO:0006790: sulfur compound metabolic process1.68E-02
134GO:0009451: RNA modification1.76E-02
135GO:0032259: methylation1.80E-02
136GO:0006006: glucose metabolic process1.84E-02
137GO:2000028: regulation of photoperiodism, flowering1.84E-02
138GO:0018107: peptidyl-threonine phosphorylation1.84E-02
139GO:0010075: regulation of meristem growth1.84E-02
140GO:0042742: defense response to bacterium1.86E-02
141GO:0009934: regulation of meristem structural organization2.00E-02
142GO:0005985: sucrose metabolic process2.17E-02
143GO:0010030: positive regulation of seed germination2.17E-02
144GO:0046854: phosphatidylinositol phosphorylation2.17E-02
145GO:0006636: unsaturated fatty acid biosynthetic process2.35E-02
146GO:0006412: translation2.35E-02
147GO:0005992: trehalose biosynthetic process2.53E-02
148GO:0009664: plant-type cell wall organization2.61E-02
149GO:0007017: microtubule-based process2.71E-02
150GO:0016575: histone deacetylation2.71E-02
151GO:0006418: tRNA aminoacylation for protein translation2.71E-02
152GO:0006364: rRNA processing2.80E-02
153GO:0048511: rhythmic process2.90E-02
154GO:0061077: chaperone-mediated protein folding2.90E-02
155GO:0035428: hexose transmembrane transport3.09E-02
156GO:0019748: secondary metabolic process3.09E-02
157GO:0006012: galactose metabolic process3.29E-02
158GO:0009831: plant-type cell wall modification involved in multidimensional cell growth3.29E-02
159GO:0006284: base-excision repair3.49E-02
160GO:0016117: carotenoid biosynthetic process3.70E-02
161GO:0009789: positive regulation of abscisic acid-activated signaling pathway3.70E-02
162GO:0042545: cell wall modification3.87E-02
163GO:0048653: anther development3.91E-02
164GO:0006396: RNA processing4.10E-02
165GO:0010197: polar nucleus fusion4.12E-02
166GO:0046323: glucose import4.12E-02
167GO:0042752: regulation of circadian rhythm4.34E-02
168GO:0002229: defense response to oomycetes4.78E-02
169GO:0010193: response to ozone4.78E-02
RankGO TermAdjusted P value
1GO:0051721: protein phosphatase 2A binding0.00E+00
2GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity0.00E+00
3GO:0042903: tubulin deacetylase activity0.00E+00
4GO:0008807: carboxyvinyl-carboxyphosphonate phosphorylmutase activity0.00E+00
5GO:0043014: alpha-tubulin binding0.00E+00
6GO:0080176: xyloglucan 1,6-alpha-xylosidase activity0.00E+00
7GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors0.00E+00
8GO:0004822: isoleucine-tRNA ligase activity0.00E+00
9GO:0046905: phytoene synthase activity0.00E+00
10GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
11GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity0.00E+00
12GO:0046406: magnesium protoporphyrin IX methyltransferase activity0.00E+00
13GO:0047513: 1,2-alpha-L-fucosidase activity0.00E+00
14GO:0016754: sinapoylglucose-malate O-sinapoyltransferase activity0.00E+00
15GO:0061634: alpha-D-xyloside xylohydrolase0.00E+00
16GO:0046422: violaxanthin de-epoxidase activity0.00E+00
17GO:0003755: peptidyl-prolyl cis-trans isomerase activity6.53E-11
18GO:0005528: FK506 binding1.63E-10
19GO:0019843: rRNA binding4.65E-08
20GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity9.54E-06
21GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity9.54E-06
22GO:0031409: pigment binding1.24E-05
23GO:0016168: chlorophyll binding1.69E-05
24GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor1.23E-04
25GO:0008266: poly(U) RNA binding1.71E-04
26GO:0004130: cytochrome-c peroxidase activity2.68E-04
27GO:0004332: fructose-bisphosphate aldolase activity2.68E-04
28GO:0051920: peroxiredoxin activity3.59E-04
29GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity4.64E-04
30GO:0051996: squalene synthase activity4.64E-04
31GO:0045485: omega-6 fatty acid desaturase activity4.64E-04
32GO:0046906: tetrapyrrole binding4.64E-04
33GO:0052638: indole-3-butyrate beta-glucosyltransferase activity4.64E-04
34GO:0016209: antioxidant activity5.75E-04
35GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase1.00E-03
36GO:0004310: farnesyl-diphosphate farnesyltransferase activity1.00E-03
37GO:0008967: phosphoglycolate phosphatase activity1.00E-03
38GO:0047746: chlorophyllase activity1.00E-03
39GO:0016868: intramolecular transferase activity, phosphotransferases1.00E-03
40GO:0004618: phosphoglycerate kinase activity1.00E-03
41GO:0010297: heteropolysaccharide binding1.00E-03
42GO:0009977: proton motive force dependent protein transmembrane transporter activity1.00E-03
43GO:0004047: aminomethyltransferase activity1.00E-03
44GO:0015250: water channel activity1.40E-03
45GO:0002161: aminoacyl-tRNA editing activity1.63E-03
46GO:0003955: NAD(P)H dehydrogenase (quinone) activity1.63E-03
47GO:0004075: biotin carboxylase activity1.63E-03
48GO:0010277: chlorophyllide a oxygenase [overall] activity1.63E-03
49GO:0050734: hydroxycinnamoyltransferase activity1.63E-03
50GO:0004089: carbonate dehydratase activity1.73E-03
51GO:0048487: beta-tubulin binding2.37E-03
52GO:0016851: magnesium chelatase activity2.37E-03
53GO:0004375: glycine dehydrogenase (decarboxylating) activity2.37E-03
54GO:0019201: nucleotide kinase activity2.37E-03
55GO:0009044: xylan 1,4-beta-xylosidase activity3.18E-03
56GO:0046556: alpha-L-arabinofuranosidase activity3.18E-03
57GO:0004659: prenyltransferase activity3.18E-03
58GO:0001053: plastid sigma factor activity3.18E-03
59GO:0004345: glucose-6-phosphate dehydrogenase activity3.18E-03
60GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity3.18E-03
61GO:0016987: sigma factor activity3.18E-03
62GO:0004185: serine-type carboxypeptidase activity3.70E-03
63GO:0030570: pectate lyase activity3.92E-03
64GO:0004356: glutamate-ammonia ligase activity4.08E-03
65GO:0003989: acetyl-CoA carboxylase activity4.08E-03
66GO:0008725: DNA-3-methyladenine glycosylase activity4.08E-03
67GO:0051537: 2 iron, 2 sulfur cluster binding4.09E-03
68GO:0003727: single-stranded RNA binding4.27E-03
69GO:0003735: structural constituent of ribosome4.67E-03
70GO:0004366: glycerol-3-phosphate O-acyltransferase activity5.05E-03
71GO:0016688: L-ascorbate peroxidase activity5.05E-03
72GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity5.05E-03
73GO:0016787: hydrolase activity5.63E-03
74GO:0050662: coenzyme binding5.80E-03
75GO:0004602: glutathione peroxidase activity6.09E-03
76GO:0004559: alpha-mannosidase activity6.09E-03
77GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity6.09E-03
78GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity6.09E-03
79GO:0004017: adenylate kinase activity6.09E-03
80GO:0048038: quinone binding6.67E-03
81GO:0019899: enzyme binding7.20E-03
82GO:0046872: metal ion binding7.45E-03
83GO:0004601: peroxidase activity7.68E-03
84GO:0004033: aldo-keto reductase (NADP) activity8.39E-03
85GO:0004034: aldose 1-epimerase activity8.39E-03
86GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)9.63E-03
87GO:0016491: oxidoreductase activity1.21E-02
88GO:0005381: iron ion transmembrane transporter activity1.23E-02
89GO:0004805: trehalose-phosphatase activity1.37E-02
90GO:0000049: tRNA binding1.68E-02
91GO:0004565: beta-galactosidase activity1.84E-02
92GO:0004022: alcohol dehydrogenase (NAD) activity1.84E-02
93GO:0031072: heat shock protein binding1.84E-02
94GO:0043621: protein self-association2.25E-02
95GO:0003954: NADH dehydrogenase activity2.53E-02
96GO:0004407: histone deacetylase activity2.53E-02
97GO:0015079: potassium ion transmembrane transporter activity2.71E-02
98GO:0008168: methyltransferase activity2.82E-02
99GO:0004707: MAP kinase activity2.90E-02
100GO:0004176: ATP-dependent peptidase activity2.90E-02
101GO:0033612: receptor serine/threonine kinase binding2.90E-02
102GO:0045330: aspartyl esterase activity3.11E-02
103GO:0003723: RNA binding3.29E-02
104GO:0022891: substrate-specific transmembrane transporter activity3.29E-02
105GO:0003756: protein disulfide isomerase activity3.49E-02
106GO:0004812: aminoacyl-tRNA ligase activity3.70E-02
107GO:0030599: pectinesterase activity3.76E-02
108GO:0003729: mRNA binding3.89E-02
109GO:0016853: isomerase activity4.34E-02
110GO:0005355: glucose transmembrane transporter activity4.34E-02
RankGO TermAdjusted P value
1GO:0009575: chromoplast stroma0.00E+00
2GO:0005943: phosphatidylinositol 3-kinase complex, class IA0.00E+00
3GO:0043235: receptor complex0.00E+00
4GO:0098572: stromal side of plastid thylakoid membrane0.00E+00
5GO:0009507: chloroplast4.73E-64
6GO:0009535: chloroplast thylakoid membrane1.57E-52
7GO:0009534: chloroplast thylakoid6.08E-43
8GO:0009941: chloroplast envelope7.69E-38
9GO:0009570: chloroplast stroma3.49E-31
10GO:0009543: chloroplast thylakoid lumen2.56E-27
11GO:0009579: thylakoid1.32E-24
12GO:0010287: plastoglobule4.44E-12
13GO:0030095: chloroplast photosystem II3.98E-11
14GO:0031977: thylakoid lumen5.57E-10
15GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)1.23E-08
16GO:0009523: photosystem II4.76E-06
17GO:0010319: stromule1.10E-05
18GO:0009533: chloroplast stromal thylakoid1.57E-05
19GO:0009654: photosystem II oxygen evolving complex1.93E-05
20GO:0016020: membrane5.35E-05
21GO:0009522: photosystem I7.34E-05
22GO:0019898: extrinsic component of membrane8.40E-05
23GO:0048046: apoplast8.85E-05
24GO:0042651: thylakoid membrane3.12E-04
25GO:0009344: nitrite reductase complex [NAD(P)H]4.64E-04
26GO:0009547: plastid ribosome4.64E-04
27GO:0031361: integral component of thylakoid membrane4.64E-04
28GO:0009782: photosystem I antenna complex4.64E-04
29GO:0043674: columella4.64E-04
30GO:0009783: photosystem II antenna complex4.64E-04
31GO:0031969: chloroplast membrane7.00E-04
32GO:0005840: ribosome8.98E-04
33GO:0080085: signal recognition particle, chloroplast targeting1.00E-03
34GO:0000427: plastid-encoded plastid RNA polymerase complex1.00E-03
35GO:0031304: intrinsic component of mitochondrial inner membrane1.00E-03
36GO:0009505: plant-type cell wall1.42E-03
37GO:0000311: plastid large ribosomal subunit1.52E-03
38GO:0033281: TAT protein transport complex1.63E-03
39GO:0010007: magnesium chelatase complex1.63E-03
40GO:0009706: chloroplast inner membrane1.71E-03
41GO:0030076: light-harvesting complex2.19E-03
42GO:0005960: glycine cleavage complex2.37E-03
43GO:0009531: secondary cell wall2.37E-03
44GO:0005618: cell wall5.08E-03
45GO:0042807: central vacuole7.20E-03
46GO:0009538: photosystem I reaction center8.39E-03
47GO:0005786: signal recognition particle, endoplasmic reticulum targeting9.63E-03
48GO:0030529: intracellular ribonucleoprotein complex9.68E-03
49GO:0042644: chloroplast nucleoid1.09E-02
50GO:0045298: tubulin complex1.09E-02
51GO:0032040: small-subunit processome1.68E-02
52GO:0009508: plastid chromosome1.84E-02
53GO:0000312: plastid small ribosomal subunit2.00E-02
54GO:0015935: small ribosomal subunit2.90E-02
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Gene type



Gene DE type