Gene: AT5G17230
     

Gene description


TAIR ID: AT5G17230

Short description: PHYTOENE SYNTHASE

Pathogen responsiveness: -0.12

General responsiveness: 1.86

Orthologous


Rice:

OS06G0729000  

Maize:

GRMZM2G149317  

Wheat: No orthologous gene

GO biological process


carotenoid biosynthetic process, ergosterol biosynthetic process


GO cellular component


chloroplast membrane, chloroplast, plastoglobule


GO molecular function


squalene synthase activity, geranylgeranyl-diphosphate geranylgeranyltransferase activity, protein binding, farnesyl-diphosphate farnesyltransferase activity, phytoene synthase activity


Protein domain


PfamPF00494, Squalene/phytoene synthase

Transcriptional regulation


Regulator:
AT1G24260

Target:
none

Protein-protein interaction network


The number of partners (degree) is: 3

click to view PPI network

Differentially expressed condition


19 conditions



SeriesControlTreatmentLog2FCAdj. P value
GSE17464Laer, JA+Flg22 0 hLaer, JA+Flg22 2 h-2.223.15E-05
GSE17464Laer, controlLaer, Flg22 2 h-1.682.10E-04
GSE17464Penta, controlPenta, Flg22 2 h-1.535.61E-04
GSE45212Col, WT, PstDC3000 AvrRpt2 0 hCol, WT, PstDC3000 AvrRpt2 12 h-1.732.00E-11
GSE45212Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 12 h-1.801.27E-11
GSE45212Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 4 h-1.636.66E-11
GSE45212Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 8 h-2.111.11E-12
GSE45214Col, med16, PstDC3000 AvrRpt2 0 hCol, med16, PstDC3000 AvrRpt2 4 h-1.823.47E-11
GSE5520Col, WT, control 10 hCol, WT, Cor- 10 h-1.692.79E-03
GSE5520Col, WT, control 7 hCol, WT, PstDC3000 7 h-2.621.35E-06
GSE56094Col, WT, control 10 hCol, WT, PstDC3000 10 h-2.009.28E-12
GSE56094Col, WT, control 11 hCol, WT, PstDC3000 11 h-2.112.53E-12
GSE56094Col, WT, control 12 hCol, WT, PstDC3000 12 h-1.677.63E-09
GSE56094Col, WT, control 7 hCol, WT, PstDC3000 7 h-1.814.89E-09
GSE56094Col, WT, control 8 hCol, WT, PstDC3000 8 h-1.743.52E-09
GSE56094Col, WT, control 9 hCol, WT, PstDC3000 9 h-1.717.09E-09
GSE58954Col, WT, Psm AvrRpt2 0 hCol, WT, Psm AvrRpt2 6 h-1.881.36E-03
GSE9674Ws-4, AtMYB30 ox, controlWs-4, AtMYB30 ox, Xanthomonas strain Xcc147 6 h-2.221.55E-02
GSE9674Ws-4, WT, controlWs-4, WT, Xanthomonas strain Xcc147 6 h-2.082.37E-02






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