gene detail

Gene description

TAIR ID: AT5G13120

Short description: cyclophilin 20-2

Pathogen responsiveness: -1.25

General responsiveness: -0.64

Orthologous

Rice: No orthologous gene

Maize:

GRMZM2G087570 GRMZM2G076544

Wheat:

TA.28895.1.S1_AT TA.28895.1.S1_S_AT TA.13731.1.S1_AT

GO biological process

protein folding, NAD(P)H dehydrogenase complex assembly, protein peptidyl-prolyl isomerization, transport

GO cellular component

chloroplast thylakoid, chloroplast thylakoid membrane, chloroplast, chloroplast thylakoid lumen, thylakoid lumen, mitochondrion, chloroplast stromal thylakoid, thylakoid

GO molecular function

peptidyl-prolyl cis-trans isomerase activity, protein binding, protein histidine kinase binding

Protein domain

Pfam	PF00160, Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation

Regulator:
AT5G61850

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 4

click to view PPI network

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE56094_WT_HRPA-  view
GSE13739_WT_GO  view
GSE13739_EDS16_GO  view
GSE5686_WT_GO  view
GSE56094_WT_PSTDC3000  view
GSE45212_MED14_PSTDC3000_AVRRPT2  view

Differentially expressed condition

7 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE17500	Col, WT, control 0 h	Col, WT, PstDC3000 24 h	-1.51	8.13E-06
GSE17500	Col, miR393, control 0 h	Col, miR393, PstDC3000 24 h	-1.55	1.21E-05
GSE18978	Col, WT, control 24 h	Col, WT, PsmES4326 24 h	-2.41	5.24E-10
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 12 h	-1.92	1.83E-12
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 12 h	-1.73	9.20E-12
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 8 h	-1.74	7.08E-12
GSE5520	Col, WT, control 10 h	Col, WT, Cor- 10 h	-1.59	1.08E-04