Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G13120

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0002184: cytoplasmic translational termination0.00E+00
2GO:0017038: protein import0.00E+00
3GO:0090071: negative regulation of ribosome biogenesis0.00E+00
4GO:0061635: regulation of protein complex stability0.00E+00
5GO:0000372: Group I intron splicing0.00E+00
6GO:1904966: positive regulation of vitamin E biosynthetic process0.00E+00
7GO:1904964: positive regulation of phytol biosynthetic process0.00E+00
8GO:0006399: tRNA metabolic process0.00E+00
9GO:0015979: photosynthesis8.76E-11
10GO:0010027: thylakoid membrane organization3.40E-10
11GO:0009773: photosynthetic electron transport in photosystem I3.63E-10
12GO:0090391: granum assembly6.83E-08
13GO:0032544: plastid translation3.88E-07
14GO:0006655: phosphatidylglycerol biosynthetic process4.07E-06
15GO:0010207: photosystem II assembly4.87E-06
16GO:1902326: positive regulation of chlorophyll biosynthetic process7.32E-06
17GO:0009735: response to cytokinin3.88E-05
18GO:0010205: photoinhibition4.31E-05
19GO:0009658: chloroplast organization4.87E-05
20GO:0071484: cellular response to light intensity5.54E-05
21GO:0045038: protein import into chloroplast thylakoid membrane1.51E-04
22GO:0015995: chlorophyll biosynthetic process1.73E-04
23GO:0042549: photosystem II stabilization2.16E-04
24GO:1901259: chloroplast rRNA processing2.91E-04
25GO:0010189: vitamin E biosynthetic process2.91E-04
26GO:0009772: photosynthetic electron transport in photosystem II3.76E-04
27GO:0010196: nonphotochemical quenching3.76E-04
28GO:0071588: hydrogen peroxide mediated signaling pathway4.05E-04
29GO:0043953: protein transport by the Tat complex4.05E-04
30GO:0065002: intracellular protein transmembrane transport4.05E-04
31GO:0043686: co-translational protein modification4.05E-04
32GO:1902458: positive regulation of stomatal opening4.05E-04
33GO:0034337: RNA folding4.05E-04
34GO:0006605: protein targeting4.71E-04
35GO:0019430: removal of superoxide radicals5.75E-04
36GO:1900865: chloroplast RNA modification8.13E-04
37GO:0035304: regulation of protein dephosphorylation8.76E-04
38GO:0043255: regulation of carbohydrate biosynthetic process8.76E-04
39GO:0016560: protein import into peroxisome matrix, docking8.76E-04
40GO:0080005: photosystem stoichiometry adjustment8.76E-04
41GO:0010115: regulation of abscisic acid biosynthetic process8.76E-04
42GO:0009915: phloem sucrose loading8.76E-04
43GO:0071457: cellular response to ozone8.76E-04
44GO:0016122: xanthophyll metabolic process8.76E-04
45GO:0006729: tetrahydrobiopterin biosynthetic process8.76E-04
46GO:1903426: regulation of reactive oxygen species biosynthetic process8.76E-04
47GO:0030388: fructose 1,6-bisphosphate metabolic process8.76E-04
48GO:0010289: homogalacturonan biosynthetic process8.76E-04
49GO:0045036: protein targeting to chloroplast9.46E-04
50GO:0043085: positive regulation of catalytic activity1.09E-03
51GO:0016024: CDP-diacylglycerol biosynthetic process1.24E-03
52GO:0042254: ribosome biogenesis1.36E-03
53GO:0006094: gluconeogenesis1.41E-03
54GO:0031022: nuclear migration along microfilament1.42E-03
55GO:1902448: positive regulation of shade avoidance1.42E-03
56GO:0006000: fructose metabolic process1.42E-03
57GO:0009062: fatty acid catabolic process1.42E-03
58GO:0015675: nickel cation transport1.42E-03
59GO:0010581: regulation of starch biosynthetic process1.42E-03
60GO:0051604: protein maturation1.42E-03
61GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition1.42E-03
62GO:0018298: protein-chromophore linkage1.52E-03
63GO:0055085: transmembrane transport1.54E-03
64GO:0010025: wax biosynthetic process1.99E-03
65GO:0006636: unsaturated fatty acid biosynthetic process1.99E-03
66GO:0006833: water transport1.99E-03
67GO:0034059: response to anoxia2.06E-03
68GO:0010239: chloroplast mRNA processing2.06E-03
69GO:0009052: pentose-phosphate shunt, non-oxidative branch2.06E-03
70GO:0080170: hydrogen peroxide transmembrane transport2.06E-03
71GO:2001141: regulation of RNA biosynthetic process2.06E-03
72GO:0006515: misfolded or incompletely synthesized protein catabolic process2.06E-03
73GO:0006412: translation2.63E-03
74GO:0031408: oxylipin biosynthetic process2.67E-03
75GO:0016998: cell wall macromolecule catabolic process2.67E-03
76GO:0006661: phosphatidylinositol biosynthetic process2.76E-03
77GO:0009765: photosynthesis, light harvesting2.76E-03
78GO:0006109: regulation of carbohydrate metabolic process2.76E-03
79GO:0045727: positive regulation of translation2.76E-03
80GO:0015994: chlorophyll metabolic process2.76E-03
81GO:0010021: amylopectin biosynthetic process2.76E-03
82GO:0010109: regulation of photosynthesis2.76E-03
83GO:0071486: cellular response to high light intensity2.76E-03
84GO:0009306: protein secretion3.47E-03
85GO:0071493: cellular response to UV-B3.54E-03
86GO:0006564: L-serine biosynthetic process3.54E-03
87GO:0016120: carotene biosynthetic process3.54E-03
88GO:0009904: chloroplast accumulation movement3.54E-03
89GO:0010236: plastoquinone biosynthetic process3.54E-03
90GO:0031365: N-terminal protein amino acid modification3.54E-03
91GO:0042335: cuticle development4.07E-03
92GO:0034220: ion transmembrane transport4.07E-03
93GO:0006364: rRNA processing4.16E-03
94GO:0000470: maturation of LSU-rRNA4.38E-03
95GO:0010190: cytochrome b6f complex assembly4.38E-03
96GO:0016554: cytidine to uridine editing4.38E-03
97GO:0006086: acetyl-CoA biosynthetic process from pyruvate4.38E-03
98GO:0010337: regulation of salicylic acid metabolic process4.38E-03
99GO:0006561: proline biosynthetic process4.38E-03
100GO:0010182: sugar mediated signaling pathway4.38E-03
101GO:0015986: ATP synthesis coupled proton transport4.71E-03
102GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)5.27E-03
103GO:0017148: negative regulation of translation5.27E-03
104GO:0009903: chloroplast avoidance movement5.27E-03
105GO:0030488: tRNA methylation5.27E-03
106GO:0010019: chloroplast-nucleus signaling pathway5.27E-03
107GO:0009395: phospholipid catabolic process6.23E-03
108GO:1900057: positive regulation of leaf senescence6.23E-03
109GO:0006614: SRP-dependent cotranslational protein targeting to membrane6.23E-03
110GO:0006400: tRNA modification6.23E-03
111GO:0015693: magnesium ion transport6.23E-03
112GO:0009567: double fertilization forming a zygote and endosperm6.57E-03
113GO:0048564: photosystem I assembly7.25E-03
114GO:0008610: lipid biosynthetic process7.25E-03
115GO:0009642: response to light intensity7.25E-03
116GO:0006353: DNA-templated transcription, termination7.25E-03
117GO:2000070: regulation of response to water deprivation7.25E-03
118GO:0016559: peroxisome fission7.25E-03
119GO:0006002: fructose 6-phosphate metabolic process8.32E-03
120GO:0071482: cellular response to light stimulus8.32E-03
121GO:0015996: chlorophyll catabolic process8.32E-03
122GO:0007186: G-protein coupled receptor signaling pathway8.32E-03
123GO:0055114: oxidation-reduction process8.62E-03
124GO:0009245: lipid A biosynthetic process9.45E-03
125GO:0010206: photosystem II repair9.45E-03
126GO:0006098: pentose-phosphate shunt9.45E-03
127GO:0006754: ATP biosynthetic process9.45E-03
128GO:0000373: Group II intron splicing9.45E-03
129GO:0042744: hydrogen peroxide catabolic process1.03E-02
130GO:0042761: very long-chain fatty acid biosynthetic process1.06E-02
131GO:0010380: regulation of chlorophyll biosynthetic process1.06E-02
132GO:0006633: fatty acid biosynthetic process1.16E-02
133GO:0006869: lipid transport1.17E-02
134GO:0006535: cysteine biosynthetic process from serine1.19E-02
135GO:0006032: chitin catabolic process1.19E-02
136GO:0009688: abscisic acid biosynthetic process1.19E-02
137GO:0019684: photosynthesis, light reaction1.31E-02
138GO:0007623: circadian rhythm1.31E-02
139GO:0009073: aromatic amino acid family biosynthetic process1.31E-02
140GO:1903507: negative regulation of nucleic acid-templated transcription1.31E-02
141GO:0006352: DNA-templated transcription, initiation1.31E-02
142GO:0009750: response to fructose1.31E-02
143GO:0016485: protein processing1.31E-02
144GO:0032259: methylation1.31E-02
145GO:0034599: cellular response to oxidative stress1.36E-02
146GO:0010152: pollen maturation1.45E-02
147GO:0045037: protein import into chloroplast stroma1.45E-02
148GO:0005986: sucrose biosynthetic process1.58E-02
149GO:0010628: positive regulation of gene expression1.58E-02
150GO:0009718: anthocyanin-containing compound biosynthetic process1.58E-02
151GO:0010020: chloroplast fission1.73E-02
152GO:0019253: reductive pentose-phosphate cycle1.73E-02
153GO:0009266: response to temperature stimulus1.73E-02
154GO:0009644: response to high light intensity1.82E-02
155GO:0009825: multidimensional cell growth1.87E-02
156GO:0010167: response to nitrate1.87E-02
157GO:0005985: sucrose metabolic process1.87E-02
158GO:0010053: root epidermal cell differentiation1.87E-02
159GO:0031347: regulation of defense response2.04E-02
160GO:0019344: cysteine biosynthetic process2.18E-02
161GO:0000027: ribosomal large subunit assembly2.18E-02
162GO:0009695: jasmonic acid biosynthetic process2.33E-02
163GO:0007017: microtubule-based process2.33E-02
164GO:0030245: cellulose catabolic process2.66E-02
165GO:0016226: iron-sulfur cluster assembly2.66E-02
166GO:2000022: regulation of jasmonic acid mediated signaling pathway2.66E-02
167GO:0006096: glycolytic process2.69E-02
168GO:0009831: plant-type cell wall modification involved in multidimensional cell growth2.83E-02
169GO:0071369: cellular response to ethylene stimulus2.83E-02
170GO:0040007: growth2.83E-02
171GO:0080167: response to karrikin2.98E-02
172GO:0048443: stamen development3.01E-02
173GO:0016117: carotenoid biosynthetic process3.19E-02
174GO:0009416: response to light stimulus3.29E-02
175GO:0080022: primary root development3.37E-02
176GO:0071472: cellular response to salt stress3.55E-02
177GO:0006662: glycerol ether metabolic process3.55E-02
178GO:0009646: response to absence of light3.74E-02
179GO:0007018: microtubule-based movement3.74E-02
180GO:0019252: starch biosynthetic process3.93E-02
181GO:0008654: phospholipid biosynthetic process3.93E-02
182GO:0048510: regulation of timing of transition from vegetative to reproductive phase4.12E-02
183GO:0000302: response to reactive oxygen species4.12E-02
184GO:0006635: fatty acid beta-oxidation4.12E-02
185GO:0016032: viral process4.32E-02
186GO:0019761: glucosinolate biosynthetic process4.32E-02
187GO:0010090: trichome morphogenesis4.52E-02
188GO:0009790: embryo development4.72E-02
189GO:0009828: plant-type cell wall loosening4.73E-02
RankGO TermAdjusted P value
1GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
2GO:0038198: auxin receptor activity0.00E+00
3GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity0.00E+00
4GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity0.00E+00
5GO:0010301: xanthoxin dehydrogenase activity0.00E+00
6GO:0090471: 9,15,9'-tri-cis-zeta-carotene isomerase activity0.00E+00
7GO:0009976: tocopherol cyclase activity0.00E+00
8GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
9GO:0033818: beta-ketoacyl-acyl-carrier-protein synthase III activity0.00E+00
10GO:1990534: thermospermine oxidase activity0.00E+00
11GO:0102193: protein-ribulosamine 3-kinase activity0.00E+00
12GO:0005048: signal sequence binding0.00E+00
13GO:0019843: rRNA binding4.41E-11
14GO:0005528: FK506 binding1.02E-05
15GO:0043023: ribosomal large subunit binding5.54E-05
16GO:0043495: protein anchor9.74E-05
17GO:0016168: chlorophyll binding1.43E-04
18GO:0022891: substrate-specific transmembrane transporter activity3.44E-04
19GO:0019899: enzyme binding3.76E-04
20GO:0030794: (S)-coclaurine-N-methyltransferase activity4.05E-04
21GO:0008444: CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase activity4.05E-04
22GO:0017169: CDP-alcohol phosphatidyltransferase activity4.05E-04
23GO:0004321: fatty-acyl-CoA synthase activity4.05E-04
24GO:0010242: oxygen evolving activity4.05E-04
25GO:0005080: protein kinase C binding4.05E-04
26GO:0042586: peptide deformylase activity4.05E-04
27GO:0045485: omega-6 fatty acid desaturase activity4.05E-04
28GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity4.05E-04
29GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity4.05E-04
30GO:0008809: carnitine racemase activity4.05E-04
31GO:0050139: nicotinate-N-glucosyltransferase activity4.05E-04
32GO:0003755: peptidyl-prolyl cis-trans isomerase activity5.87E-04
33GO:0005525: GTP binding8.63E-04
34GO:0033201: alpha-1,4-glucan synthase activity8.76E-04
35GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity8.76E-04
36GO:0016630: protochlorophyllide reductase activity8.76E-04
37GO:0008805: carbon-monoxide oxygenase activity8.76E-04
38GO:0015099: nickel cation transmembrane transporter activity8.76E-04
39GO:0000822: inositol hexakisphosphate binding8.76E-04
40GO:0009977: proton motive force dependent protein transmembrane transporter activity8.76E-04
41GO:0004617: phosphoglycerate dehydrogenase activity8.76E-04
42GO:0042802: identical protein binding9.32E-04
43GO:0008047: enzyme activator activity9.46E-04
44GO:0015462: ATPase-coupled protein transmembrane transporter activity1.42E-03
45GO:0004373: glycogen (starch) synthase activity1.42E-03
46GO:0004751: ribose-5-phosphate isomerase activity1.42E-03
47GO:0008236: serine-type peptidase activity1.42E-03
48GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity1.42E-03
49GO:0008266: poly(U) RNA binding1.59E-03
50GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity2.06E-03
51GO:0016851: magnesium chelatase activity2.06E-03
52GO:0004165: dodecenoyl-CoA delta-isomerase activity2.06E-03
53GO:0001872: (1->3)-beta-D-glucan binding2.06E-03
54GO:0051536: iron-sulfur cluster binding2.20E-03
55GO:0004176: ATP-dependent peptidase activity2.67E-03
56GO:0003735: structural constituent of ribosome2.73E-03
57GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity2.76E-03
58GO:0004045: aminoacyl-tRNA hydrolase activity2.76E-03
59GO:0080032: methyl jasmonate esterase activity2.76E-03
60GO:0016987: sigma factor activity2.76E-03
61GO:0009011: starch synthase activity2.76E-03
62GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity2.76E-03
63GO:0001053: plastid sigma factor activity2.76E-03
64GO:0010011: auxin binding2.76E-03
65GO:0003959: NADPH dehydrogenase activity3.54E-03
66GO:0003924: GTPase activity3.82E-03
67GO:0080030: methyl indole-3-acetate esterase activity4.38E-03
68GO:0004332: fructose-bisphosphate aldolase activity4.38E-03
69GO:0031177: phosphopantetheine binding4.38E-03
70GO:0004130: cytochrome-c peroxidase activity4.38E-03
71GO:0046933: proton-transporting ATP synthase activity, rotational mechanism4.38E-03
72GO:0016688: L-ascorbate peroxidase activity4.38E-03
73GO:0004366: glycerol-3-phosphate O-acyltransferase activity4.38E-03
74GO:0004784: superoxide dismutase activity4.38E-03
75GO:0042578: phosphoric ester hydrolase activity4.38E-03
76GO:0004791: thioredoxin-disulfide reductase activity4.71E-03
77GO:0000035: acyl binding5.27E-03
78GO:0004124: cysteine synthase activity5.27E-03
79GO:0008168: methyltransferase activity5.28E-03
80GO:0016788: hydrolase activity, acting on ester bonds5.76E-03
81GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor6.17E-03
82GO:0004620: phospholipase activity6.23E-03
83GO:0008312: 7S RNA binding7.25E-03
84GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process7.25E-03
85GO:0043022: ribosome binding7.25E-03
86GO:0004033: aldo-keto reductase (NADP) activity7.25E-03
87GO:0016491: oxidoreductase activity7.74E-03
88GO:0015250: water channel activity7.85E-03
89GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water8.32E-03
90GO:0030247: polysaccharide binding9.25E-03
91GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors9.45E-03
92GO:0016207: 4-coumarate-CoA ligase activity9.45E-03
93GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity1.03E-02
94GO:0030234: enzyme regulator activity1.19E-02
95GO:0004568: chitinase activity1.19E-02
96GO:0047372: acylglycerol lipase activity1.31E-02
97GO:0008017: microtubule binding1.39E-02
98GO:0008378: galactosyltransferase activity1.45E-02
99GO:0009982: pseudouridine synthase activity1.58E-02
100GO:0004565: beta-galactosidase activity1.58E-02
101GO:0004022: alcohol dehydrogenase (NAD) activity1.58E-02
102GO:0015095: magnesium ion transmembrane transporter activity1.58E-02
103GO:0008131: primary amine oxidase activity1.73E-02
104GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.73E-02
105GO:0042626: ATPase activity, coupled to transmembrane movement of substances1.78E-02
106GO:0004857: enzyme inhibitor activity2.18E-02
107GO:0003714: transcription corepressor activity2.18E-02
108GO:0008289: lipid binding2.30E-02
109GO:0003729: mRNA binding2.65E-02
110GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity2.66E-02
111GO:0008810: cellulase activity2.83E-02
112GO:0005509: calcium ion binding3.02E-02
113GO:0016874: ligase activity3.05E-02
114GO:0047134: protein-disulfide reductase activity3.19E-02
115GO:0016853: isomerase activity3.74E-02
116GO:0050662: coenzyme binding3.74E-02
117GO:0003723: RNA binding3.80E-02
118GO:0003824: catalytic activity4.02E-02
119GO:0005215: transporter activity4.07E-02
120GO:0016762: xyloglucan:xyloglucosyl transferase activity4.12E-02
121GO:0004252: serine-type endopeptidase activity4.49E-02
122GO:0000156: phosphorelay response regulator activity4.52E-02
123GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds4.90E-02
124GO:0005200: structural constituent of cytoskeleton4.93E-02
RankGO TermAdjusted P value
1GO:0043235: receptor complex0.00E+00
2GO:0009575: chromoplast stroma0.00E+00
3GO:0009515: granal stacked thylakoid0.00E+00
4GO:0043233: organelle lumen0.00E+00
5GO:0009507: chloroplast1.24E-73
6GO:0009570: chloroplast stroma9.71E-37
7GO:0009535: chloroplast thylakoid membrane1.22E-34
8GO:0009941: chloroplast envelope3.79E-34
9GO:0009579: thylakoid3.67E-23
10GO:0009534: chloroplast thylakoid8.30E-22
11GO:0009543: chloroplast thylakoid lumen2.34E-15
12GO:0031977: thylakoid lumen6.28E-09
13GO:0009654: photosystem II oxygen evolving complex3.58E-07
14GO:0019898: extrinsic component of membrane2.80E-06
15GO:0031969: chloroplast membrane1.24E-05
16GO:0033281: TAT protein transport complex2.54E-05
17GO:0010287: plastoglobule4.16E-05
18GO:0030095: chloroplast photosystem II1.28E-04
19GO:0046658: anchored component of plasma membrane2.07E-04
20GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)2.16E-04
21GO:0009706: chloroplast inner membrane2.20E-04
22GO:0009532: plastid stroma2.70E-04
23GO:0031361: integral component of thylakoid membrane4.05E-04
24GO:0005840: ribosome5.19E-04
25GO:0009523: photosystem II6.28E-04
26GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)6.89E-04
27GO:0030093: chloroplast photosystem I8.76E-04
28GO:0080085: signal recognition particle, chloroplast targeting8.76E-04
29GO:0010319: stromule9.40E-04
30GO:0009528: plastid inner membrane1.42E-03
31GO:0005782: peroxisomal matrix1.42E-03
32GO:0010007: magnesium chelatase complex1.42E-03
33GO:0009509: chromoplast1.42E-03
34GO:0009707: chloroplast outer membrane1.52E-03
35GO:0016020: membrane1.54E-03
36GO:0000312: plastid small ribosomal subunit1.59E-03
37GO:0005623: cell1.83E-03
38GO:0015630: microtubule cytoskeleton2.06E-03
39GO:0042651: thylakoid membrane2.43E-03
40GO:0009526: plastid envelope2.76E-03
41GO:0009544: chloroplast ATP synthase complex2.76E-03
42GO:0009527: plastid outer membrane2.76E-03
43GO:0055035: plastid thylakoid membrane3.54E-03
44GO:0009536: plastid6.65E-03
45GO:0009501: amyloplast7.25E-03
46GO:0030529: intracellular ribonucleoprotein complex7.85E-03
47GO:0005786: signal recognition particle, endoplasmic reticulum targeting8.32E-03
48GO:0008180: COP9 signalosome9.45E-03
49GO:0019005: SCF ubiquitin ligase complex1.03E-02
50GO:0055028: cortical microtubule1.19E-02
51GO:0032040: small-subunit processome1.45E-02
52GO:0009508: plastid chromosome1.58E-02
53GO:0016021: integral component of membrane2.11E-02
54GO:0031225: anchored component of membrane2.23E-02
55GO:0015935: small ribosomal subunit2.50E-02
56GO:0048046: apoplast2.85E-02
57GO:0005874: microtubule2.86E-02
58GO:0005871: kinesin complex3.19E-02
59GO:0009522: photosystem I3.74E-02
60GO:0005777: peroxisome4.01E-02
61GO:0009295: nucleoid4.93E-02
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Gene type



Gene DE type