GO Enrichment Analysis of Co-expressed Genes with
AT5G13120
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0010323: negative regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | 0.00E+00 |
| 2 | GO:1901918: negative regulation of exoribonuclease activity | 0.00E+00 |
| 3 | GO:0009715: chalcone biosynthetic process | 0.00E+00 |
| 4 | GO:0046838: phosphorylated carbohydrate dephosphorylation | 0.00E+00 |
| 5 | GO:0042821: pyridoxal biosynthetic process | 0.00E+00 |
| 6 | GO:0006114: glycerol biosynthetic process | 0.00E+00 |
| 7 | GO:0042820: vitamin B6 catabolic process | 0.00E+00 |
| 8 | GO:0006399: tRNA metabolic process | 0.00E+00 |
| 9 | GO:0015979: photosynthesis | 7.93E-07 |
| 10 | GO:0090391: granum assembly | 8.46E-06 |
| 11 | GO:0006364: rRNA processing | 1.45E-05 |
| 12 | GO:0006021: inositol biosynthetic process | 3.53E-05 |
| 13 | GO:0009658: chloroplast organization | 3.53E-05 |
| 14 | GO:0016120: carotene biosynthetic process | 5.65E-05 |
| 15 | GO:0016123: xanthophyll biosynthetic process | 5.65E-05 |
| 16 | GO:0046855: inositol phosphate dephosphorylation | 8.30E-05 |
| 17 | GO:0010190: cytochrome b6f complex assembly | 8.30E-05 |
| 18 | GO:0048564: photosystem I assembly | 1.94E-04 |
| 19 | GO:0000476: maturation of 4.5S rRNA | 2.22E-04 |
| 20 | GO:0009443: pyridoxal 5'-phosphate salvage | 2.22E-04 |
| 21 | GO:0000967: rRNA 5'-end processing | 2.22E-04 |
| 22 | GO:1904966: positive regulation of vitamin E biosynthetic process | 2.22E-04 |
| 23 | GO:1904964: positive regulation of phytol biosynthetic process | 2.22E-04 |
| 24 | GO:0042371: vitamin K biosynthetic process | 2.22E-04 |
| 25 | GO:0006436: tryptophanyl-tRNA aminoacylation | 2.22E-04 |
| 26 | GO:0006419: alanyl-tRNA aminoacylation | 2.22E-04 |
| 27 | GO:0009657: plastid organization | 2.40E-04 |
| 28 | GO:0000373: Group II intron splicing | 2.91E-04 |
| 29 | GO:0010027: thylakoid membrane organization | 3.60E-04 |
| 30 | GO:0009793: embryo development ending in seed dormancy | 3.94E-04 |
| 31 | GO:0015995: chlorophyll biosynthetic process | 4.46E-04 |
| 32 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 4.95E-04 |
| 33 | GO:0034755: iron ion transmembrane transport | 4.95E-04 |
| 34 | GO:0009629: response to gravity | 4.95E-04 |
| 35 | GO:0080005: photosystem stoichiometry adjustment | 4.95E-04 |
| 36 | GO:0006432: phenylalanyl-tRNA aminoacylation | 4.95E-04 |
| 37 | GO:0000256: allantoin catabolic process | 4.95E-04 |
| 38 | GO:0034470: ncRNA processing | 4.95E-04 |
| 39 | GO:0006790: sulfur compound metabolic process | 5.37E-04 |
| 40 | GO:0010207: photosystem II assembly | 6.86E-04 |
| 41 | GO:0046854: phosphatidylinositol phosphorylation | 7.67E-04 |
| 42 | GO:0006013: mannose metabolic process | 8.05E-04 |
| 43 | GO:0010136: ureide catabolic process | 8.05E-04 |
| 44 | GO:0051604: protein maturation | 8.05E-04 |
| 45 | GO:0006145: purine nucleobase catabolic process | 1.15E-03 |
| 46 | GO:0009052: pentose-phosphate shunt, non-oxidative branch | 1.15E-03 |
| 47 | GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis | 1.15E-03 |
| 48 | GO:2001141: regulation of RNA biosynthetic process | 1.15E-03 |
| 49 | GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly | 1.15E-03 |
| 50 | GO:0006020: inositol metabolic process | 1.15E-03 |
| 51 | GO:0009102: biotin biosynthetic process | 1.15E-03 |
| 52 | GO:0042254: ribosome biogenesis | 1.50E-03 |
| 53 | GO:0009765: photosynthesis, light harvesting | 1.53E-03 |
| 54 | GO:0006546: glycine catabolic process | 1.53E-03 |
| 55 | GO:0016558: protein import into peroxisome matrix | 1.95E-03 |
| 56 | GO:0006564: L-serine biosynthetic process | 1.95E-03 |
| 57 | GO:0010236: plastoquinone biosynthetic process | 1.95E-03 |
| 58 | GO:0006655: phosphatidylglycerol biosynthetic process | 2.40E-03 |
| 59 | GO:0009117: nucleotide metabolic process | 2.40E-03 |
| 60 | GO:0009643: photosynthetic acclimation | 2.40E-03 |
| 61 | GO:0042549: photosystem II stabilization | 2.40E-03 |
| 62 | GO:1901259: chloroplast rRNA processing | 2.89E-03 |
| 63 | GO:0048280: vesicle fusion with Golgi apparatus | 2.89E-03 |
| 64 | GO:0010189: vitamin E biosynthetic process | 2.89E-03 |
| 65 | GO:0010196: nonphotochemical quenching | 3.40E-03 |
| 66 | GO:0009645: response to low light intensity stimulus | 3.40E-03 |
| 67 | GO:0006400: tRNA modification | 3.40E-03 |
| 68 | GO:0006401: RNA catabolic process | 3.40E-03 |
| 69 | GO:0009772: photosynthetic electron transport in photosystem II | 3.40E-03 |
| 70 | GO:0032259: methylation | 3.43E-03 |
| 71 | GO:0042128: nitrate assimilation | 3.64E-03 |
| 72 | GO:0009642: response to light intensity | 3.94E-03 |
| 73 | GO:0006402: mRNA catabolic process | 3.94E-03 |
| 74 | GO:0006875: cellular metal ion homeostasis | 3.94E-03 |
| 75 | GO:0031540: regulation of anthocyanin biosynthetic process | 3.94E-03 |
| 76 | GO:0000105: histidine biosynthetic process | 3.94E-03 |
| 77 | GO:0009231: riboflavin biosynthetic process | 3.94E-03 |
| 78 | GO:0016311: dephosphorylation | 4.04E-03 |
| 79 | GO:0018298: protein-chromophore linkage | 4.25E-03 |
| 80 | GO:0071482: cellular response to light stimulus | 4.51E-03 |
| 81 | GO:0032544: plastid translation | 4.51E-03 |
| 82 | GO:0017004: cytochrome complex assembly | 4.51E-03 |
| 83 | GO:0031425: chloroplast RNA processing | 5.74E-03 |
| 84 | GO:0005982: starch metabolic process | 5.74E-03 |
| 85 | GO:0006896: Golgi to vacuole transport | 6.38E-03 |
| 86 | GO:0010114: response to red light | 6.93E-03 |
| 87 | GO:0009773: photosynthetic electron transport in photosystem I | 7.06E-03 |
| 88 | GO:0006415: translational termination | 7.06E-03 |
| 89 | GO:0072593: reactive oxygen species metabolic process | 7.06E-03 |
| 90 | GO:0006879: cellular iron ion homeostasis | 7.06E-03 |
| 91 | GO:0006352: DNA-templated transcription, initiation | 7.06E-03 |
| 92 | GO:0018119: peptidyl-cysteine S-nitrosylation | 7.06E-03 |
| 93 | GO:0005983: starch catabolic process | 7.76E-03 |
| 94 | GO:0016024: CDP-diacylglycerol biosynthetic process | 7.76E-03 |
| 95 | GO:0045037: protein import into chloroplast stroma | 7.76E-03 |
| 96 | GO:2000012: regulation of auxin polar transport | 8.48E-03 |
| 97 | GO:0006094: gluconeogenesis | 8.48E-03 |
| 98 | GO:0009767: photosynthetic electron transport chain | 8.48E-03 |
| 99 | GO:0010020: chloroplast fission | 9.23E-03 |
| 100 | GO:0010224: response to UV-B | 9.69E-03 |
| 101 | GO:0080167: response to karrikin | 9.77E-03 |
| 102 | GO:0019853: L-ascorbic acid biosynthetic process | 1.00E-02 |
| 103 | GO:0000162: tryptophan biosynthetic process | 1.08E-02 |
| 104 | GO:0006863: purine nucleobase transport | 1.08E-02 |
| 105 | GO:0019953: sexual reproduction | 1.24E-02 |
| 106 | GO:0006418: tRNA aminoacylation for protein translation | 1.24E-02 |
| 107 | GO:0007017: microtubule-based process | 1.24E-02 |
| 108 | GO:0009768: photosynthesis, light harvesting in photosystem I | 1.24E-02 |
| 109 | GO:0019915: lipid storage | 1.33E-02 |
| 110 | GO:0048278: vesicle docking | 1.33E-02 |
| 111 | GO:0006396: RNA processing | 1.38E-02 |
| 112 | GO:0071369: cellular response to ethylene stimulus | 1.51E-02 |
| 113 | GO:0042147: retrograde transport, endosome to Golgi | 1.70E-02 |
| 114 | GO:0016117: carotenoid biosynthetic process | 1.70E-02 |
| 115 | GO:0008033: tRNA processing | 1.79E-02 |
| 116 | GO:0048868: pollen tube development | 1.89E-02 |
| 117 | GO:0009790: embryo development | 1.96E-02 |
| 118 | GO:0015986: ATP synthesis coupled proton transport | 1.99E-02 |
| 119 | GO:0061025: membrane fusion | 1.99E-02 |
| 120 | GO:0006814: sodium ion transport | 1.99E-02 |
| 121 | GO:0006623: protein targeting to vacuole | 2.09E-02 |
| 122 | GO:0055072: iron ion homeostasis | 2.09E-02 |
| 123 | GO:0006413: translational initiation | 2.16E-02 |
| 124 | GO:0010193: response to ozone | 2.19E-02 |
| 125 | GO:0006891: intra-Golgi vesicle-mediated transport | 2.19E-02 |
| 126 | GO:0006635: fatty acid beta-oxidation | 2.19E-02 |
| 127 | GO:0010583: response to cyclopentenone | 2.30E-02 |
| 128 | GO:0009451: RNA modification | 2.37E-02 |
| 129 | GO:0009911: positive regulation of flower development | 2.85E-02 |
| 130 | GO:0006906: vesicle fusion | 3.09E-02 |
| 131 | GO:0006888: ER to Golgi vesicle-mediated transport | 3.20E-02 |
| 132 | GO:0009416: response to light stimulus | 3.29E-02 |
| 133 | GO:0009611: response to wounding | 3.38E-02 |
| 134 | GO:0009817: defense response to fungus, incompatible interaction | 3.45E-02 |
| 135 | GO:0048481: plant ovule development | 3.45E-02 |
| 136 | GO:0009813: flavonoid biosynthetic process | 3.57E-02 |
| 137 | GO:0007568: aging | 3.82E-02 |
| 138 | GO:0009867: jasmonic acid mediated signaling pathway | 4.08E-02 |
| 139 | GO:0009637: response to blue light | 4.08E-02 |
| 140 | GO:0006457: protein folding | 4.52E-02 |
| 141 | GO:0006887: exocytosis | 4.61E-02 |
| 142 | GO:0009926: auxin polar transport | 4.88E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0046406: magnesium protoporphyrin IX methyltransferase activity | 0.00E+00 |
| 2 | GO:0050236: pyridoxine:NADP 4-dehydrogenase activity | 0.00E+00 |
| 3 | GO:0071522: ureidoglycine aminohydrolase activity | 0.00E+00 |
| 4 | GO:0045435: lycopene epsilon cyclase activity | 0.00E+00 |
| 5 | GO:0042623: ATPase activity, coupled | 0.00E+00 |
| 6 | GO:0016210: naringenin-chalcone synthase activity | 0.00E+00 |
| 7 | GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity | 0.00E+00 |
| 8 | GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity | 0.00E+00 |
| 9 | GO:0008942: nitrite reductase [NAD(P)H] activity | 0.00E+00 |
| 10 | GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity | 0.00E+00 |
| 11 | GO:0000906: 6,7-dimethyl-8-ribityllumazine synthase activity | 0.00E+00 |
| 12 | GO:0004076: biotin synthase activity | 0.00E+00 |
| 13 | GO:0043136: glycerol-3-phosphatase activity | 0.00E+00 |
| 14 | GO:0000121: glycerol-1-phosphatase activity | 0.00E+00 |
| 15 | GO:0008934: inositol monophosphate 1-phosphatase activity | 2.32E-06 |
| 16 | GO:0052833: inositol monophosphate 4-phosphatase activity | 2.32E-06 |
| 17 | GO:0052832: inositol monophosphate 3-phosphatase activity | 2.32E-06 |
| 18 | GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity | 1.15E-04 |
| 19 | GO:0051537: 2 iron, 2 sulfur cluster binding | 1.23E-04 |
| 20 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 1.41E-04 |
| 21 | GO:0050308: sugar-phosphatase activity | 2.22E-04 |
| 22 | GO:0004813: alanine-tRNA ligase activity | 2.22E-04 |
| 23 | GO:0019203: carbohydrate phosphatase activity | 2.22E-04 |
| 24 | GO:0015088: copper uptake transmembrane transporter activity | 2.22E-04 |
| 25 | GO:0004830: tryptophan-tRNA ligase activity | 2.22E-04 |
| 26 | GO:0004654: polyribonucleotide nucleotidyltransferase activity | 2.22E-04 |
| 27 | GO:0010347: L-galactose-1-phosphate phosphatase activity | 2.22E-04 |
| 28 | GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity | 2.22E-04 |
| 29 | GO:0004347: glucose-6-phosphate isomerase activity | 2.22E-04 |
| 30 | GO:0005381: iron ion transmembrane transporter activity | 3.46E-04 |
| 31 | GO:0004826: phenylalanine-tRNA ligase activity | 4.95E-04 |
| 32 | GO:0004617: phosphoglycerate dehydrogenase activity | 4.95E-04 |
| 33 | GO:0004047: aminomethyltransferase activity | 4.95E-04 |
| 34 | GO:0000049: tRNA binding | 5.37E-04 |
| 35 | GO:0004148: dihydrolipoyl dehydrogenase activity | 8.05E-04 |
| 36 | GO:0004751: ribose-5-phosphate isomerase activity | 8.05E-04 |
| 37 | GO:0070402: NADPH binding | 8.05E-04 |
| 38 | GO:0005528: FK506 binding | 9.41E-04 |
| 39 | GO:0035529: NADH pyrophosphatase activity | 1.15E-03 |
| 40 | GO:0016851: magnesium chelatase activity | 1.15E-03 |
| 41 | GO:0016149: translation release factor activity, codon specific | 1.15E-03 |
| 42 | GO:0008508: bile acid:sodium symporter activity | 1.15E-03 |
| 43 | GO:0016987: sigma factor activity | 1.53E-03 |
| 44 | GO:0043495: protein anchor | 1.53E-03 |
| 45 | GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity | 1.53E-03 |
| 46 | GO:0001053: plastid sigma factor activity | 1.53E-03 |
| 47 | GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | 1.53E-03 |
| 48 | GO:0042578: phosphoric ester hydrolase activity | 2.40E-03 |
| 49 | GO:0016462: pyrophosphatase activity | 2.40E-03 |
| 50 | GO:2001070: starch binding | 2.40E-03 |
| 51 | GO:0019843: rRNA binding | 2.83E-03 |
| 52 | GO:0004559: alpha-mannosidase activity | 2.89E-03 |
| 53 | GO:0008195: phosphatidate phosphatase activity | 2.89E-03 |
| 54 | GO:0016597: amino acid binding | 3.08E-03 |
| 55 | GO:0019899: enzyme binding | 3.40E-03 |
| 56 | GO:0016168: chlorophyll binding | 3.45E-03 |
| 57 | GO:0003723: RNA binding | 3.66E-03 |
| 58 | GO:0004033: aldo-keto reductase (NADP) activity | 3.94E-03 |
| 59 | GO:0043022: ribosome binding | 3.94E-03 |
| 60 | GO:0008138: protein tyrosine/serine/threonine phosphatase activity | 5.11E-03 |
| 61 | GO:0003747: translation release factor activity | 5.11E-03 |
| 62 | GO:0003993: acid phosphatase activity | 5.62E-03 |
| 63 | GO:0000149: SNARE binding | 5.87E-03 |
| 64 | GO:0005484: SNAP receptor activity | 6.93E-03 |
| 65 | GO:0008168: methyltransferase activity | 7.08E-03 |
| 66 | GO:0000175: 3'-5'-exoribonuclease activity | 8.48E-03 |
| 67 | GO:0031072: heat shock protein binding | 8.48E-03 |
| 68 | GO:0005215: transporter activity | 9.06E-03 |
| 69 | GO:0042973: glucan endo-1,3-beta-D-glucosidase activity | 9.23E-03 |
| 70 | GO:0031409: pigment binding | 1.08E-02 |
| 71 | GO:0005345: purine nucleobase transmembrane transporter activity | 1.24E-02 |
| 72 | GO:0022891: substrate-specific transmembrane transporter activity | 1.51E-02 |
| 73 | GO:0003924: GTPase activity | 1.60E-02 |
| 74 | GO:0003727: single-stranded RNA binding | 1.60E-02 |
| 75 | GO:0004812: aminoacyl-tRNA ligase activity | 1.70E-02 |
| 76 | GO:0046933: proton-transporting ATP synthase activity, rotational mechanism | 1.89E-02 |
| 77 | GO:0016853: isomerase activity | 1.99E-02 |
| 78 | GO:0048038: quinone binding | 2.19E-02 |
| 79 | GO:0008483: transaminase activity | 2.63E-02 |
| 80 | GO:0003743: translation initiation factor activity | 2.70E-02 |
| 81 | GO:0042802: identical protein binding | 2.94E-02 |
| 82 | GO:0008757: S-adenosylmethionine-dependent methyltransferase activity | 3.32E-02 |
| 83 | GO:0008236: serine-type peptidase activity | 3.32E-02 |
| 84 | GO:0015238: drug transmembrane transporter activity | 3.57E-02 |
| 85 | GO:0016788: hydrolase activity, acting on ester bonds | 3.65E-02 |
| 86 | GO:0016491: oxidoreductase activity | 3.77E-02 |
| 87 | GO:0050897: cobalt ion binding | 3.82E-02 |
| 88 | GO:0008233: peptidase activity | 4.35E-02 |
| 89 | GO:0051539: 4 iron, 4 sulfur cluster binding | 4.47E-02 |
| 90 | GO:0052689: carboxylic ester hydrolase activity | 4.88E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009349: riboflavin synthase complex | 0.00E+00 |
| 2 | GO:0009507: chloroplast | 9.51E-50 |
| 3 | GO:0009535: chloroplast thylakoid membrane | 2.09E-23 |
| 4 | GO:0009570: chloroplast stroma | 1.53E-18 |
| 5 | GO:0009941: chloroplast envelope | 4.60E-16 |
| 6 | GO:0009534: chloroplast thylakoid | 2.03E-10 |
| 7 | GO:0009543: chloroplast thylakoid lumen | 9.64E-09 |
| 8 | GO:0031977: thylakoid lumen | 2.17E-07 |
| 9 | GO:0009579: thylakoid | 3.84E-07 |
| 10 | GO:0042646: plastid nucleoid | 1.93E-05 |
| 11 | GO:0009654: photosystem II oxygen evolving complex | 6.72E-05 |
| 12 | GO:0009782: photosystem I antenna complex | 2.22E-04 |
| 13 | GO:0009515: granal stacked thylakoid | 2.22E-04 |
| 14 | GO:0042644: chloroplast nucleoid | 2.91E-04 |
| 15 | GO:0030095: chloroplast photosystem II | 6.86E-04 |
| 16 | GO:0010007: magnesium chelatase complex | 8.05E-04 |
| 17 | GO:0042651: thylakoid membrane | 1.03E-03 |
| 18 | GO:0009526: plastid envelope | 1.53E-03 |
| 19 | GO:0031897: Tic complex | 1.53E-03 |
| 20 | GO:0030286: dynein complex | 1.53E-03 |
| 21 | GO:0055035: plastid thylakoid membrane | 1.95E-03 |
| 22 | GO:0031969: chloroplast membrane | 2.03E-03 |
| 23 | GO:0009523: photosystem II | 2.12E-03 |
| 24 | GO:0019898: extrinsic component of membrane | 2.12E-03 |
| 25 | GO:0009706: chloroplast inner membrane | 2.13E-03 |
| 26 | GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1) | 2.40E-03 |
| 27 | GO:0010287: plastoglobule | 2.64E-03 |
| 28 | GO:0016363: nuclear matrix | 2.89E-03 |
| 29 | GO:0005778: peroxisomal membrane | 2.91E-03 |
| 30 | GO:0009538: photosystem I reaction center | 3.94E-03 |
| 31 | GO:0012507: ER to Golgi transport vesicle membrane | 3.94E-03 |
| 32 | GO:0009539: photosystem II reaction center | 4.51E-03 |
| 33 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 5.11E-03 |
| 34 | GO:0055028: cortical microtubule | 6.38E-03 |
| 35 | GO:0031201: SNARE complex | 6.39E-03 |
| 36 | GO:0090404: pollen tube tip | 7.06E-03 |
| 37 | GO:0012511: monolayer-surrounded lipid storage body | 7.06E-03 |
| 38 | GO:0016020: membrane | 7.67E-03 |
| 39 | GO:0009508: plastid chromosome | 8.48E-03 |
| 40 | GO:0030076: light-harvesting complex | 1.00E-02 |
| 41 | GO:0005875: microtubule associated complex | 1.08E-02 |
| 42 | GO:0009536: plastid | 1.08E-02 |
| 43 | GO:0009532: plastid stroma | 1.33E-02 |
| 44 | GO:0009504: cell plate | 2.09E-02 |
| 45 | GO:0005759: mitochondrial matrix | 2.11E-02 |
| 46 | GO:0009295: nucleoid | 2.63E-02 |
| 47 | GO:0010319: stromule | 2.63E-02 |
| 48 | GO:0005840: ribosome | 2.71E-02 |
| 49 | GO:0015934: large ribosomal subunit | 3.82E-02 |
| 50 | GO:0005874: microtubule | 4.28E-02 |
| 51 | GO:0031902: late endosome membrane | 4.61E-02 |