gene detail

Gene description

TAIR ID: AT5G09860

Short description: nuclear matrix protein-related

Pathogen responsiveness: -2.36

General responsiveness: -2.73

Orthologous

Rice:

OS03G0110400

Maize:

GRMZM2G006673

Wheat:

TA.3337.1.S1_AT TA.3337.1.S1_S_AT

GO biological process

RNA splicing, defense response to fungus, ethylene-activated signaling pathway, mRNA export from nucleus, production of ta-siRNAs involved in RNA interference, gene silencing by RNA, mRNA processing

GO cellular component

intracellular, THO complex, nucleus

GO molecular function

RNA binding

Protein domain

Pfam	PF11957, THO complex subunit 1 transcription elongation factor

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

PATH:ath03040: Spliceosome
PATH:ath03013: RNA transport

Transcriptional regulation

Regulator:
AT4G16110, AT4G18770

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 3

click to view PPI network

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2 view
GSE13739_EDS16_GO view

Differentially expressed condition

1 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE37269	St0, WT, control	St0, WT, TEV 21 d	-1.51	1.31E-02