gene detail

Gene description

TAIR ID: AT5G04770

Short description: cationic amino acid transporter 6

Pathogen responsiveness: -0.38

General responsiveness: -0.37

Orthologous

Rice: No orthologous gene

Maize:

Wheat: No orthologous gene

GO biological process

transport, response to nematode, amino acid transmembrane transport

GO cellular component

chloroplast membrane, plasma membrane, integral component of membrane, membrane

GO molecular function

basic amino acid transmembrane transporter activity, amino acid transmembrane transporter activity

Protein domain

Pfam	PF13906, C-terminus of AA_permease
Pfam	PF13520, Amino acid permease

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 30 (Top5%)

Coexpression network

GSE26679_WT_GC view
GSE45212_MED14_PSTDC3000_AVRRPT2 view

Differentially expressed condition

8 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE17464	Penta, control	Penta, Alternaria brassicicola 3 d	-3.67	4.31E-05
GSE17464	Penta, control	Penta, PstDC3000 12 h	-2.93	9.96E-04
GSE17464	Penta, control	Penta, Flg22 2 h	-3.28	2.25E-04
GSE17464	Penta, control	Penta, Flg22 2 h	-2.61	2.78E-03
GSE26679	Col, WT, GC 0 h	Col, WT, GC 96 h	-2.45	4.74E-04
GSE26679	Col, edr1, GC 0 h	Col, edr1, GC 96 h	-3.32	1.08E-05
GSE37269	St0, WT, control	St0, WT, TEV 21 d	-2.23	1.08E-03
GSE40544	Col, Sid2, control	Col, Sid2, PstDC3000 EV	2.02	1.19E-04