Gene: AT5G04340
     

Gene description


TAIR ID: AT5G04340

Short description: zinc finger of Arabidopsis thaliana 6

Pathogen responsiveness: 1.76

General responsiveness: 1.66

Orthologous


Rice: No orthologous gene
Maize:

GRMZM2G035103   GRMZM2G105092  

Wheat:

TAAFFX.26007.1.S1_AT  


GO biological process


regulation of transcription, DNA-templated, response to chitin, phosphate ion homeostasis, regulation of root development, transcription


GO cellular component


nucleus


GO molecular function


core promoter binding, transcription factor activity, sequence-specific DNA binding, metal ion binding


Protein domain


PfamPF13912, C2H2-type zinc finger
SMARTSM00355, ZnF_C2H2

Metabolic pathway


Not involved in metabolic pathway


KEGG pathway


Not involved in KEGG pathway


Transcriptional regulation


Regulator:
AT5G56110, AT5G13790, AT2G43010

Target:
none

Protein-protein interaction network


The number of partners (degree) is: 3

click to view PPI network

Differentially expressed condition


49 conditions



SeriesControlTreatmentLog2FCAdj. P value
GSE12856Col, WT, controlCol, WT, Bg h3.121.20E-07
GSE12856Col, ataf1, controlCol, ataf1, Bg h3.423.73E-08
GSE17464Laer, controlLaer, PstDC3000 12 h-1.744.85E-03
GSE17464Penta, controlPenta, PstDC3000 12 h-1.802.74E-03
GSE17500Col, WT, control 0 hCol, WT, PstDC3000 24 h1.511.17E-03
GSE18329Col, WT, controlCol, WT, Hpa noco2 96 h2.499.39E-15
GSE18978Col, WT, control 24 hCol, WT, PsmES4326 24 h4.642.79E-09
GSE2169Col, WT, waterCol, WT, chitin 30 min1.572.53E-08
GSE2169Col, rre1, waterCol, rre1, chitin 30 min2.167.72E-11
GSE2169Col, rre2, waterCol, rre2, chitin 30 min1.714.38E-09
GSE2538Col, WT, controlCol, WT, crab shell chitin 30 min3.782.54E-07
GSE2538Col, WT, controlCol, WT, purified chitin octamer 30 min3.554.27E-07
GSE26206Col, WT, controlCol, WT, R.solani_AG2_1 7 d1.742.61E-05
GSE37255Ws-4, WT, controlWs-4, WT, Hyaloperonospora arabidopsidis strain Emwa1 3 d4.032.05E-02
GSE37269St0, WT, controlSt0, WT, TEV 21 d-1.731.12E-02
GSE40544Col, WT, controlCol, WT, PstDC3000 AvrRpt21.725.09E-03
GSE40544Col, WT, controlCol, WT, PstDC3000 EV2.284.88E-04
GSE45212Col, WT, PstDC3000 AvrRpt2 0 hCol, WT, PstDC3000 AvrRpt2 12 h3.142.07E-10
GSE45212Col, WT, PstDC3000 AvrRpt2 0 hCol, WT, PstDC3000 AvrRpt2 4 h3.766.06E-11
GSE45212Col, WT, PstDC3000 AvrRpt2 0 hCol, WT, PstDC3000 AvrRpt2 8 h4.047.39E-12
GSE45212Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 12 h2.021.20E-07
GSE45212Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 4 h3.911.12E-11
GSE45212Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 8 h3.033.25E-10
GSE45214Col, WT, PstDC3000 AvrRpt2 0 hCol, WT, PstDC3000 AvrRpt2 4 h4.304.73E-12
GSE45214Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 4 h3.872.92E-11
GSE45214Col, med16, PstDC3000 AvrRpt2 0 hCol, med16, PstDC3000 AvrRpt2 4 h4.401.31E-12
GSE45214Col, npr1, PstDC3000 AvrRpt2 0 hCol, npr1, PstDC3000 AvrRpt2 4 h4.988.40E-13
GSE4746Col, WT, water 30 minCol, WT, chitooctaose 30 min3.943.27E-05
GSE50526Col, WT, mock 24 hCol, WT, A. brassicicola 24 h3.913.94E-06
GSE50526Col, WT, mock 9 hCol, WT, A. brassicicola 9 h4.918.11E-08
GSE52979Col, WT, acetoneCol, WT, acetone flg22_2 h2.424.79E-08
GSE52979Col, WT, oxo_C14_HSLCol, WT, oxo_C14_HSL flg22_2 h2.591.64E-08
GSE5520Col, WT, control 24 hCol, WT, PstDC3000 24 h1.521.94E-02
GSE5520Col, WT, control 7 hCol, WT, PstDC3000 7 h1.551.61E-03
GSE5615Col, WT, water 4 hCol, WT, Flg22 4 h1.912.56E-05
GSE5615Col, WT, water 4 hCol, WT, HrpZ 4 h2.345.58E-07
GSE5616Col, WT, water 12 hCol, WT, P. infestans 12 h2.573.11E-04
GSE5616Col, WT, water 6 hCol, WT, P. infestans 6 h2.746.93E-05
GSE6176Col, WT, control 12 hCol, WT, PstDC3000 12 h1.862.05E-04
GSE6556Col, gh3.5, controlCol, gh3.5, PstDC3000 AvrRpt2 48 h2.972.22E-05
GSE73351Ws-4, WT, controlWs-4, WT, H.ara Emwa1 3 d4.031.93E-02
GSE73351Ws-4, map65_3, controlWs-4, map65_3, H.ara Emwa1 3 d3.231.45E-02
GSE8319Col, WT, controlCol, WT, chitooctaose 30 min3.692.67E-16
GSE9674Ws-4, AtMYB30 ox, controlWs-4, AtMYB30 ox, Xanthomonas strain Xcc147 2-4 h3.158.13E-07
GSE9674Ws-4, AtMYB30 ox, controlWs-4, AtMYB30 ox, Xanthomonas strain Xcc147 6 h2.351.40E-05
GSE9674Ws-4, AtMYB30 ox, controlWs-4, AtMYB30 ox, Xanthomonas strain Xcc147 90-105 min3.375.32E-07
GSE9674Ws-4, WT, controlWs-4, WT, Xanthomonas strain Xcc147 2-4 h2.892.60E-06
GSE9674Ws-4, WT, controlWs-4, WT, Xanthomonas strain Xcc147 6 h2.401.42E-05
GSE9674Ws-4, WT, controlWs-4, WT, Xanthomonas strain Xcc147 90-105 min2.737.65E-07






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