Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G04340

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0035024: negative regulation of Rho protein signal transduction0.00E+00
2GO:0010046: response to mycotoxin0.00E+00
3GO:0046967: cytosol to ER transport0.00E+00
4GO:0035264: multicellular organism growth0.00E+00
5GO:0071289: cellular response to nickel ion0.00E+00
6GO:0098755: maintenance of seed dormancy by absisic acid0.00E+00
7GO:0034775: glutathione transmembrane transport0.00E+00
8GO:0010200: response to chitin1.65E-11
9GO:0009611: response to wounding2.04E-11
10GO:0009873: ethylene-activated signaling pathway1.26E-06
11GO:0009737: response to abscisic acid4.14E-05
12GO:0006970: response to osmotic stress7.61E-05
13GO:0009695: jasmonic acid biosynthetic process9.40E-05
14GO:0006751: glutathione catabolic process1.07E-04
15GO:0031408: oxylipin biosynthetic process1.09E-04
16GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway1.93E-04
17GO:2000070: regulation of response to water deprivation2.45E-04
18GO:0030974: thiamine pyrophosphate transport2.60E-04
19GO:0009865: pollen tube adhesion2.60E-04
20GO:0050691: regulation of defense response to virus by host2.60E-04
21GO:0006680: glucosylceramide catabolic process2.60E-04
22GO:0034472: snRNA 3'-end processing2.60E-04
23GO:0009609: response to symbiotic bacterium2.60E-04
24GO:0051180: vitamin transport2.60E-04
25GO:0010193: response to ozone2.96E-04
26GO:0098656: anion transmembrane transport3.65E-04
27GO:2000280: regulation of root development4.33E-04
28GO:0010029: regulation of seed germination5.18E-04
29GO:0006741: NADP biosynthetic process5.74E-04
30GO:1901679: nucleotide transmembrane transport5.74E-04
31GO:0031407: oxylipin metabolic process5.74E-04
32GO:0042754: negative regulation of circadian rhythm5.74E-04
33GO:0010289: homogalacturonan biosynthetic process5.74E-04
34GO:2000030: regulation of response to red or far red light5.74E-04
35GO:0006898: receptor-mediated endocytosis5.74E-04
36GO:0015893: drug transport5.74E-04
37GO:0009651: response to salt stress6.76E-04
38GO:0016045: detection of bacterium9.31E-04
39GO:0010359: regulation of anion channel activity9.31E-04
40GO:0010288: response to lead ion9.31E-04
41GO:0090630: activation of GTPase activity9.31E-04
42GO:0009961: response to 1-aminocyclopropane-1-carboxylic acid9.31E-04
43GO:0019674: NAD metabolic process9.31E-04
44GO:0034427: nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'9.31E-04
45GO:0080121: AMP transport9.31E-04
46GO:0046786: viral replication complex formation and maintenance9.31E-04
47GO:0080168: abscisic acid transport9.31E-04
48GO:0009751: response to salicylic acid1.17E-03
49GO:0051707: response to other organism1.24E-03
50GO:0033014: tetrapyrrole biosynthetic process1.33E-03
51GO:0019363: pyridine nucleotide biosynthetic process1.33E-03
52GO:0030100: regulation of endocytosis1.33E-03
53GO:1902347: response to strigolactone1.78E-03
54GO:0009694: jasmonic acid metabolic process1.78E-03
55GO:0045727: positive regulation of translation1.78E-03
56GO:0034440: lipid oxidation1.78E-03
57GO:0015867: ATP transport1.78E-03
58GO:0010117: photoprotection2.27E-03
59GO:0032957: inositol trisphosphate metabolic process2.27E-03
60GO:0009247: glycolipid biosynthetic process2.27E-03
61GO:0070897: DNA-templated transcriptional preinitiation complex assembly2.27E-03
62GO:0045487: gibberellin catabolic process2.27E-03
63GO:0009620: response to fungus2.53E-03
64GO:0006796: phosphate-containing compound metabolic process2.80E-03
65GO:0047484: regulation of response to osmotic stress2.80E-03
66GO:0015866: ADP transport2.80E-03
67GO:0035435: phosphate ion transmembrane transport2.80E-03
68GO:0098655: cation transmembrane transport3.36E-03
69GO:0009861: jasmonic acid and ethylene-dependent systemic resistance3.36E-03
70GO:0010555: response to mannitol3.36E-03
71GO:0080086: stamen filament development3.36E-03
72GO:1901001: negative regulation of response to salt stress3.36E-03
73GO:1900057: positive regulation of leaf senescence3.97E-03
74GO:0051510: regulation of unidimensional cell growth3.97E-03
75GO:1902074: response to salt3.97E-03
76GO:0006401: RNA catabolic process3.97E-03
77GO:0006955: immune response3.97E-03
78GO:0009790: embryo development4.59E-03
79GO:0019375: galactolipid biosynthetic process4.60E-03
80GO:0007155: cell adhesion4.60E-03
81GO:0009061: anaerobic respiration4.60E-03
82GO:1900150: regulation of defense response to fungus4.60E-03
83GO:0009699: phenylpropanoid biosynthetic process5.27E-03
84GO:0048193: Golgi vesicle transport5.27E-03
85GO:0006355: regulation of transcription, DNA-templated5.64E-03
86GO:0007623: circadian rhythm5.68E-03
87GO:0009753: response to jasmonic acid5.76E-03
88GO:0000184: nuclear-transcribed mRNA catabolic process, nonsense-mediated decay5.98E-03
89GO:0006783: heme biosynthetic process5.98E-03
90GO:0010345: suberin biosynthetic process5.98E-03
91GO:0051865: protein autoubiquitination5.98E-03
92GO:0006779: porphyrin-containing compound biosynthetic process6.71E-03
93GO:0006952: defense response6.83E-03
94GO:0006782: protoporphyrinogen IX biosynthetic process7.47E-03
95GO:0019538: protein metabolic process7.47E-03
96GO:0006839: mitochondrial transport7.69E-03
97GO:0010015: root morphogenesis8.27E-03
98GO:0009698: phenylpropanoid metabolic process8.27E-03
99GO:0052544: defense response by callose deposition in cell wall8.27E-03
100GO:0010105: negative regulation of ethylene-activated signaling pathway9.09E-03
101GO:0071365: cellular response to auxin stimulus9.09E-03
102GO:0018107: peptidyl-threonine phosphorylation9.94E-03
103GO:0055046: microgametogenesis9.94E-03
104GO:0048467: gynoecium development1.08E-02
105GO:0002237: response to molecule of bacterial origin1.08E-02
106GO:0009414: response to water deprivation1.08E-02
107GO:0071732: cellular response to nitric oxide1.17E-02
108GO:0070588: calcium ion transmembrane transport1.17E-02
109GO:0009901: anther dehiscence1.17E-02
110GO:0006351: transcription, DNA-templated1.18E-02
111GO:0009809: lignin biosynthetic process1.18E-02
112GO:0006364: rRNA processing1.18E-02
113GO:0010224: response to UV-B1.22E-02
114GO:2000377: regulation of reactive oxygen species metabolic process1.36E-02
115GO:0009863: salicylic acid mediated signaling pathway1.36E-02
116GO:0009269: response to desiccation1.56E-02
117GO:0045892: negative regulation of transcription, DNA-templated1.67E-02
118GO:0031348: negative regulation of defense response1.67E-02
119GO:0080092: regulation of pollen tube growth1.67E-02
120GO:0030245: cellulose catabolic process1.67E-02
121GO:0009624: response to nematode1.68E-02
122GO:0071369: cellular response to ethylene stimulus1.77E-02
123GO:0040007: growth1.77E-02
124GO:0001944: vasculature development1.77E-02
125GO:0009686: gibberellin biosynthetic process1.77E-02
126GO:0009742: brassinosteroid mediated signaling pathway1.78E-02
127GO:0048443: stamen development1.88E-02
128GO:0009409: response to cold1.90E-02
129GO:0000271: polysaccharide biosynthetic process2.11E-02
130GO:0010501: RNA secondary structure unwinding2.11E-02
131GO:0048653: anther development2.11E-02
132GO:0048868: pollen tube development2.22E-02
133GO:0009741: response to brassinosteroid2.22E-02
134GO:0009960: endosperm development2.22E-02
135GO:0045489: pectin biosynthetic process2.22E-02
136GO:0048544: recognition of pollen2.34E-02
137GO:0006814: sodium ion transport2.34E-02
138GO:0009749: response to glucose2.46E-02
139GO:0009791: post-embryonic development2.46E-02
140GO:0010183: pollen tube guidance2.46E-02
141GO:0000302: response to reactive oxygen species2.58E-02
142GO:0080156: mitochondrial mRNA modification2.58E-02
143GO:0006633: fatty acid biosynthetic process2.64E-02
144GO:1901657: glycosyl compound metabolic process2.83E-02
145GO:0071281: cellular response to iron ion2.83E-02
146GO:0010150: leaf senescence2.90E-02
147GO:0009639: response to red or far red light2.96E-02
148GO:0051607: defense response to virus3.22E-02
149GO:0010027: thylakoid membrane organization3.35E-02
150GO:0009617: response to bacterium3.46E-02
151GO:0010468: regulation of gene expression3.46E-02
152GO:0006468: protein phosphorylation3.48E-02
153GO:0009788: negative regulation of abscisic acid-activated signaling pathway3.49E-02
154GO:0009816: defense response to bacterium, incompatible interaction3.49E-02
155GO:0009627: systemic acquired resistance3.63E-02
156GO:0015995: chlorophyll biosynthetic process3.77E-02
157GO:0048481: plant ovule development4.05E-02
158GO:0009738: abscisic acid-activated signaling pathway4.18E-02
159GO:0009555: pollen development4.35E-02
160GO:0010119: regulation of stomatal movement4.49E-02
161GO:0035556: intracellular signal transduction4.65E-02
162GO:0045087: innate immune response4.79E-02
163GO:0016051: carbohydrate biosynthetic process4.79E-02
RankGO TermAdjusted P value
1GO:0008419: RNA lariat debranching enzyme activity0.00E+00
2GO:0080123: jasmonate-amino synthetase activity0.00E+00
3GO:0070566: adenylyltransferase activity0.00E+00
4GO:0017048: Rho GTPase binding0.00E+00
5GO:0016629: 12-oxophytodienoate reductase activity3.13E-06
6GO:0009922: fatty acid elongase activity7.32E-05
7GO:0016621: cinnamoyl-CoA reductase activity1.93E-04
8GO:0010181: FMN binding2.46E-04
9GO:0004348: glucosylceramidase activity2.60E-04
10GO:0042736: NADH kinase activity2.60E-04
11GO:0090422: thiamine pyrophosphate transporter activity2.60E-04
12GO:0090440: abscisic acid transporter activity2.60E-04
13GO:0004103: choline kinase activity5.74E-04
14GO:0008883: glutamyl-tRNA reductase activity5.74E-04
15GO:0003839: gamma-glutamylcyclotransferase activity5.74E-04
16GO:0003958: NADPH-hemoprotein reductase activity5.74E-04
17GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity5.74E-04
18GO:0019888: protein phosphatase regulator activity7.57E-04
19GO:0003840: gamma-glutamyltransferase activity9.31E-04
20GO:0036374: glutathione hydrolase activity9.31E-04
21GO:0046423: allene-oxide cyclase activity9.31E-04
22GO:0004383: guanylate cyclase activity9.31E-04
23GO:0016165: linoleate 13S-lipoxygenase activity9.31E-04
24GO:0047325: inositol tetrakisphosphate 1-kinase activity9.31E-04
25GO:0052726: inositol-1,3,4-trisphosphate 5-kinase activity9.31E-04
26GO:0102337: 3-oxo-cerotoyl-CoA synthase activity1.05E-03
27GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity1.05E-03
28GO:0102336: 3-oxo-arachidoyl-CoA synthase activity1.05E-03
29GO:0035250: UDP-galactosyltransferase activity1.33E-03
30GO:0052725: inositol-1,3,4-trisphosphate 6-kinase activity1.33E-03
31GO:0052634: C-19 gibberellin 2-beta-dioxygenase activity1.33E-03
32GO:0001653: peptide receptor activity1.33E-03
33GO:0016756: glutathione gamma-glutamylcysteinyltransferase activity1.33E-03
34GO:0005432: calcium:sodium antiporter activity1.33E-03
35GO:0043565: sequence-specific DNA binding2.17E-03
36GO:0070696: transmembrane receptor protein serine/threonine kinase binding2.27E-03
37GO:0080122: AMP transmembrane transporter activity2.27E-03
38GO:0003700: transcription factor activity, sequence-specific DNA binding3.02E-03
39GO:0005347: ATP transmembrane transporter activity3.36E-03
40GO:0015217: ADP transmembrane transporter activity3.36E-03
41GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity3.64E-03
42GO:0019899: enzyme binding3.97E-03
43GO:0102425: myricetin 3-O-glucosyltransferase activity3.97E-03
44GO:0102360: daphnetin 3-O-glucosyltransferase activity3.97E-03
45GO:0004427: inorganic diphosphatase activity3.97E-03
46GO:0015491: cation:cation antiporter activity4.60E-03
47GO:0047893: flavonol 3-O-glucosyltransferase activity4.60E-03
48GO:0004004: ATP-dependent RNA helicase activity4.80E-03
49GO:0003951: NAD+ kinase activity5.27E-03
50GO:0015297: antiporter activity5.36E-03
51GO:0005096: GTPase activator activity5.59E-03
52GO:0004864: protein phosphatase inhibitor activity7.47E-03
53GO:0005315: inorganic phosphate transmembrane transporter activity9.94E-03
54GO:0005262: calcium channel activity9.94E-03
55GO:0015114: phosphate ion transmembrane transporter activity9.94E-03
56GO:0000175: 3'-5'-exoribonuclease activity9.94E-03
57GO:0017025: TBP-class protein binding1.17E-02
58GO:0004674: protein serine/threonine kinase activity1.27E-02
59GO:0080043: quercetin 3-O-glucosyltransferase activity1.53E-02
60GO:0080044: quercetin 7-O-glucosyltransferase activity1.53E-02
61GO:0035251: UDP-glucosyltransferase activity1.56E-02
62GO:0004540: ribonuclease activity1.56E-02
63GO:0004707: MAP kinase activity1.56E-02
64GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity1.67E-02
65GO:0008514: organic anion transmembrane transporter activity1.88E-02
66GO:0004842: ubiquitin-protein transferase activity1.97E-02
67GO:0016758: transferase activity, transferring hexosyl groups2.05E-02
68GO:0050662: coenzyme binding2.34E-02
69GO:0016301: kinase activity2.44E-02
70GO:0005524: ATP binding2.91E-02
71GO:0008194: UDP-glycosyltransferase activity3.25E-02
72GO:0003677: DNA binding3.32E-02
73GO:0044212: transcription regulatory region DNA binding3.52E-02
74GO:0102483: scopolin beta-glucosidase activity3.77E-02
75GO:0008757: S-adenosylmethionine-dependent methyltransferase activity3.91E-02
76GO:0015238: drug transmembrane transporter activity4.20E-02
77GO:0000287: magnesium ion binding4.39E-02
RankGO TermAdjusted P value
1GO:0032039: integrator complex0.00E+00
2GO:0070382: exocytic vesicle2.60E-04
3GO:0000159: protein phosphatase type 2A complex5.84E-04
4GO:0045177: apical part of cell1.33E-03
5GO:0000178: exosome (RNase complex)2.27E-03
6GO:0031463: Cul3-RING ubiquitin ligase complex2.80E-03
7GO:0005737: cytoplasm3.72E-03
8GO:0016604: nuclear body6.71E-03
9GO:0005938: cell cortex9.94E-03
10GO:0005743: mitochondrial inner membrane1.95E-02
11GO:0005634: nucleus2.06E-02
12GO:0005770: late endosome2.22E-02
13GO:0005768: endosome3.02E-02
14GO:0005778: peroxisomal membrane3.09E-02
15GO:0000932: P-body3.35E-02
16GO:0009707: chloroplast outer membrane4.05E-02
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Gene type



Gene DE type