gene detail

Gene description

TAIR ID: AT5G01410

Short description: Aldolase-type TIM barrel family protein

Pathogen responsiveness: -1.08

General responsiveness: -0.19

Orthologous

Rice: No orthologous gene

Maize:

GRMZM2G120652

Wheat:

TA.5738.1.S1_AT

GO biological process

pyridoxine biosynthetic process, response to non-ionic osmotic stress, response to salt stress, chlorophyll metabolic process, vitamin B6 biosynthetic process, hyperosmotic salinity response, pyridoxal phosphate biosynthetic process, response to lipid hydroperoxide, cellular amino acid metabolic process, response to oxidative stress, response to UV-B

GO cellular component

plasma membrane, cytosol, endomembrane system, cytoplasm

GO molecular function

protein heterodimerization activity, pyridoxal 5'-phosphate synthase (glutamine hydrolysing) activity, protein homodimerization activity, protein binding

Protein domain

Pfam	PF01680, SOR/SNZ family

Metabolic pathway

PWY-6466: pyridoxal 5'-phosphate biosynthesis II

KEGG pathway

PATH:ath00750: Vitamin B6 metabolism

Transcriptional regulation

Regulator:
AT5G13790, AT3G24050, AT1G24260

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 6

click to view PPI network

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE26679_WT_GC  view
GSE56094_WT_HRPA-  view
GSE13739_WT_GO  view
GSE45212_MED14_PSTDC3000_AVRRPT2  view
GSE26679_EDR1_GC  view

Differentially expressed condition

7 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE18978	Col, WT, control 24 h	Col, WT, PsmES4326 24 h	-1.94	3.35E-09
GSE26679	Col, edr1, GC 0 h	Col, edr1, GC 36 h	-1.50	8.39E-10
GSE37269	St0, WT, control	St0, WT, TEV 21 d	-1.54	4.54E-03
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 12 h	-1.74	2.11E-13
GSE56094	Col, WT, control 10 h	Col, WT, PstDC3000 10 h	-2.15	1.11E-14
GSE56094	Col, WT, control 13 h	Col, WT, PstDC3000 13 h	-1.68	2.67E-10
GSE56094	Col, WT, control 8 h	Col, WT, PstDC3000 8 h	-1.63	1.92E-09