gene detail

Gene description

TAIR ID: AT4G40070

Short description: RING/U-box superfamily protein

Pathogen responsiveness: -0.30

General responsiveness: 0.30

Orthologous

Rice: No orthologous gene

Maize: No orthologous gene

Wheat: No orthologous gene

GO biological process

protein ubiquitination

GO cellular component

extracellular region, integral component of membrane

GO molecular function

metal ion binding

Protein domain

Pfam	PF13639, Ring finger domain
SMART	SM00184, RING

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation

Regulator:
AT1G24260

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 1

Coexpression network

GSE56094_WT_HRPA- view
GSE56094_WT_PSTDC3000 view

Differentially expressed condition

18 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE17464	Laer, JA+Flg22 0 h	Laer, JA+Flg22 1 h	1.58	1.98E-03
GSE37269	St0, WT, control	St0, WT, TEV 21 d	-2.38	2.58E-05
GSE56094	Col, WT, control 10 h	Col, WT, PstDC3000 10 h	2.78	5.46E-12
GSE56094	Col, WT, control 10 h	Col, WT, hrpA- 10 h	2.68	6.32E-10
GSE56094	Col, WT, control 11 h	Col, WT, PstDC3000 11 h	1.94	6.61E-07
GSE56094	Col, WT, control 11 h	Col, WT, hrpA- 11 h	2.76	1.53E-10
GSE56094	Col, WT, control 12 h	Col, WT, PstDC3000 12 h	2.56	2.29E-10
GSE56094	Col, WT, control 12 h	Col, WT, hrpA- 12 h	2.22	6.06E-07
GSE56094	Col, WT, control 13 h	Col, WT, PstDC3000 13 h	2.54	1.99E-10
GSE56094	Col, WT, control 13 h	Col, WT, hrpA- 13 h	2.54	7.09E-09
GSE56094	Col, WT, control 4 h	Col, WT, PstDC3000 4 h	1.57	1.88E-04
GSE56094	Col, WT, control 5 h	Col, WT, hrpA- 5 h	1.55	3.74E-04
GSE56094	Col, WT, control 6 h	Col, WT, hrpA- 6 h	1.97	4.60E-06
GSE56094	Col, WT, control 7 h	Col, WT, hrpA- 7 h	2.32	7.64E-08
GSE56094	Col, WT, control 8 h	Col, WT, PstDC3000 8 h	1.68	2.01E-05
GSE56094	Col, WT, control 8 h	Col, WT, hrpA- 8 h	2.49	5.40E-09
GSE56094	Col, WT, control 9 h	Col, WT, PstDC3000 9 h	2.14	8.67E-08
GSE56094	Col, WT, control 9 h	Col, WT, hrpA- 9 h	2.39	1.95E-08