Gene: AT4G39260
     

Gene description


TAIR ID: AT4G39260

Short description: cold, circadian rhythm, and RNA binding 1

Pathogen responsiveness: -0.98

General responsiveness: 0.20

Orthologous


Rice:

OS03G0670700   OS04G0414300   OS03G0278800   OS05G0427300  

Maize: No orthologous gene
Wheat: No orthologous gene

GO biological process


response to salt stress, response to cold, response to zinc ion, alternative mRNA splicing, via spliceosome, response to cytokinin, response to abscisic acid, innate immune response


GO cellular component


peroxisome, nucleolus, apoplast, cell wall, plasma membrane, Golgi apparatus, chloroplast, plasmodesma, nucleus


GO molecular function


unkown


Protein domain


PfamPF00076, RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
SMARTSM00360, RRM

Metabolic pathway


Not involved in metabolic pathway


KEGG pathway


Not involved in KEGG pathway


Transcriptional regulation


Regulator:
AT1G24260

Target:
none

Protein-protein interaction network


The number of partners (degree) is: 6

click to view PPI network

Differentially expressed condition


6 conditions



SeriesControlTreatmentLog2FCAdj. P value
GSE13739Col, WT, control 0 hCol, WT, G.orontii 6 h-2.011.56E-05
GSE13739Col, eds, control 0 hCol, eds, G.orontii 6 h-2.522.02E-07
GSE17464Laer, controlLaer, Alternaria brassicicola 3 d2.853.98E-07
GSE17464Penta, controlPenta, Alternaria brassicicola 3 d3.094.49E-08
GSE26679Col, edr1, GC 0 hCol, edr1, GC 36 h1.862.53E-09
GSE6556Col, gh3.5, controlCol, gh3.5, PstDC3000 AvrRpt2 48 h2.299.64E-05






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