Gene: AT4G39100
     


Gene description


TAIR ID: AT4G39100

Short description: PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein

Pathogen responsiveness: -2.08

General responsiveness: -2.11

Orthologous


Rice: No orthologous gene
Maize: No orthologous gene
Wheat: No orthologous gene

GO biological process


negative regulation of histone acetylation, heterochromatin assembly, covalent chromatin modification, regulation of transcription, DNA-templated, regulation of photoperiodism, flowering, chromatin silencing, chromatin organization, post-embryonic development, transcription, flower development


GO cellular component


chromatin, nucleus, chromatin silencing complex


GO molecular function


chromatin binding, protein binding, transcription regulatory region sequence-specific DNA binding, transcription factor activity, sequence-specific DNA binding, metal ion binding, methylated histone binding


Protein domain


PfamPF00628, PHD-finger
PfamPF01426, BAH domain
SMARTSM00249, PHD
SMARTSM00439, BAH

Metabolic pathway


Not involved in metabolic pathway


KEGG pathway


Not involved in KEGG pathway


Transcriptional regulation


Regulator:
AT5G13790, AT1G24260

Target:
none

Protein-protein interaction network


The number of partners (degree) is: 5

click to view PPI network

Differentially expressed condition


3 conditions



SeriesControlTreatmentLog2FCAdj. P value
GSE17464Laer, controlLaer, Flg22 1 h-1.674.86E-05
GSE17464Penta, controlPenta, Flg22 2 h-1.684.50E-05
GSE52979Col, WT, oxo_C14_HSLCol, WT, oxo_C14_HSL flg22_2 h-1.581.02E-02






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