co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G39100

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006592: ornithine biosynthetic process	0.00E+00
2	GO:0046890: regulation of lipid biosynthetic process	0.00E+00
3	GO:0051776: detection of redox state	0.00E+00
4	GO:0010513: positive regulation of phosphatidylinositol biosynthetic process	0.00E+00
5	GO:0045740: positive regulation of DNA replication	0.00E+00
6	GO:0006007: glucose catabolic process	9.50E-05
7	GO:0031468: nuclear envelope reassembly	9.50E-05
8	GO:0071712: ER-associated misfolded protein catabolic process	2.24E-04
9	GO:0055088: lipid homeostasis	2.24E-04
10	GO:0006432: phenylalanyl-tRNA aminoacylation	2.24E-04
11	GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation	2.24E-04
12	GO:0019441: tryptophan catabolic process to kynurenine	2.24E-04
13	GO:0060145: viral gene silencing in virus induced gene silencing	3.73E-04
14	GO:0071494: cellular response to UV-C	3.73E-04
15	GO:0070919: production of siRNA involved in chromatin silencing by small RNA	3.73E-04
16	GO:0008333: endosome to lysosome transport	3.73E-04
17	GO:0007188: adenylate cyclase-modulating G-protein coupled receptor signaling pathway	3.73E-04
18	GO:0046417: chorismate metabolic process	3.73E-04
19	GO:0015940: pantothenate biosynthetic process	3.73E-04
20	GO:0045454: cell redox homeostasis	4.44E-04
21	GO:0006516: glycoprotein catabolic process	5.37E-04
22	GO:1901332: negative regulation of lateral root development	5.37E-04
23	GO:1902290: positive regulation of defense response to oomycetes	5.37E-04
24	GO:0051259: protein oligomerization	5.37E-04
25	GO:0006624: vacuolar protein processing	5.37E-04
26	GO:0010109: regulation of photosynthesis	7.14E-04
27	GO:0071249: cellular response to nitrate	7.14E-04
28	GO:0006749: glutathione metabolic process	7.14E-04
29	GO:0032366: intracellular sterol transport	7.14E-04
30	GO:0009229: thiamine diphosphate biosynthetic process	9.02E-04
31	GO:0045736: negative regulation of cyclin-dependent protein serine/threonine kinase activity	1.10E-03
32	GO:0009228: thiamine biosynthetic process	1.10E-03
33	GO:0006014: D-ribose metabolic process	1.10E-03
34	GO:0006751: glutathione catabolic process	1.10E-03
35	GO:2000067: regulation of root morphogenesis	1.31E-03
36	GO:0010555: response to mannitol	1.31E-03
37	GO:0010311: lateral root formation	1.40E-03
38	GO:0007050: cell cycle arrest	1.54E-03
39	GO:0000082: G1/S transition of mitotic cell cycle	1.54E-03
40	GO:0048527: lateral root development	1.54E-03
41	GO:0035196: production of miRNAs involved in gene silencing by miRNA	1.54E-03
42	GO:0042255: ribosome assembly	1.78E-03
43	GO:1900150: regulation of defense response to fungus	1.78E-03
44	GO:0000028: ribosomal small subunit assembly	1.78E-03
45	GO:0007186: G-protein coupled receptor signaling pathway	2.03E-03
46	GO:0006526: arginine biosynthetic process	2.03E-03
47	GO:0010267: production of ta-siRNAs involved in RNA interference	2.56E-03
48	GO:0072593: reactive oxygen species metabolic process	3.14E-03
49	GO:0009073: aromatic amino acid family biosynthetic process	3.14E-03
50	GO:0009750: response to fructose	3.14E-03
51	GO:0006378: mRNA polyadenylation	3.14E-03
52	GO:0010152: pollen maturation	3.44E-03
53	GO:0009737: response to abscisic acid	3.54E-03
54	GO:0010102: lateral root morphogenesis	3.76E-03
55	GO:2000028: regulation of photoperiodism, flowering	3.76E-03
56	GO:0016569: covalent chromatin modification	3.86E-03
57	GO:0007030: Golgi organization	4.41E-03
58	GO:0006071: glycerol metabolic process	4.75E-03
59	GO:0034976: response to endoplasmic reticulum stress	4.75E-03
60	GO:0006487: protein N-linked glycosylation	5.10E-03
61	GO:0009863: salicylic acid mediated signaling pathway	5.10E-03
62	GO:0016226: iron-sulfur cluster assembly	6.20E-03
63	GO:0048443: stamen development	6.98E-03
64	GO:0042147: retrograde transport, endosome to Golgi	7.38E-03
65	GO:0010118: stomatal movement	7.79E-03
66	GO:0080022: primary root development	7.79E-03
67	GO:0034220: ion transmembrane transport	7.79E-03
68	GO:0000413: protein peptidyl-prolyl isomerization	7.79E-03
69	GO:0061025: membrane fusion	8.63E-03
70	GO:0009749: response to glucose	9.06E-03
71	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	9.51E-03
72	GO:0032502: developmental process	9.96E-03
73	GO:0006457: protein folding	1.02E-02
74	GO:0010090: trichome morphogenesis	1.04E-02
75	GO:0006914: autophagy	1.09E-02
76	GO:0010286: heat acclimation	1.14E-02
77	GO:0051607: defense response to virus	1.18E-02
78	GO:0016126: sterol biosynthetic process	1.23E-02
79	GO:0006974: cellular response to DNA damage stimulus	1.33E-02
80	GO:0009407: toxin catabolic process	1.59E-02
81	GO:0009853: photorespiration	1.76E-02
82	GO:0006099: tricarboxylic acid cycle	1.81E-02
83	GO:0009751: response to salicylic acid	1.98E-02
84	GO:0006629: lipid metabolic process	2.01E-02
85	GO:0009926: auxin polar transport	2.10E-02
86	GO:0009744: response to sucrose	2.10E-02
87	GO:0009636: response to toxic substance	2.29E-02
88	GO:0009965: leaf morphogenesis	2.29E-02
89	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	2.41E-02
90	GO:0006486: protein glycosylation	2.60E-02
91	GO:0051603: proteolysis involved in cellular protein catabolic process	2.67E-02
92	GO:0010224: response to UV-B	2.67E-02
93	GO:0006096: glycolytic process	2.93E-02
94	GO:0048367: shoot system development	3.00E-02
95	GO:0009620: response to fungus	3.14E-02
96	GO:0009908: flower development	3.22E-02
97	GO:0051726: regulation of cell cycle	3.49E-02
98	GO:0007623: circadian rhythm	4.93E-02
99	GO:0010150: leaf senescence	4.93E-02

Rank	GO Term	Adjusted P value
1	GO:0017168: 5-oxoprolinase (ATP-hydrolyzing) activity	0.00E+00
2	GO:0050334: thiaminase activity	0.00E+00
3	GO:0008777: acetylornithine deacetylase activity	0.00E+00
4	GO:0004560: alpha-L-fucosidase activity	9.50E-05
5	GO:0003864: 3-methyl-2-oxobutanoate hydroxymethyltransferase activity	9.50E-05
6	GO:0030544: Hsp70 protein binding	9.50E-05
7	GO:0046537: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity	2.24E-04
8	GO:0004826: phenylalanine-tRNA ligase activity	2.24E-04
9	GO:0004106: chorismate mutase activity	2.24E-04
10	GO:0004061: arylformamidase activity	2.24E-04
11	GO:0044390: ubiquitin-like protein conjugating enzyme binding	2.24E-04
12	GO:0052692: raffinose alpha-galactosidase activity	3.73E-04
13	GO:0001664: G-protein coupled receptor binding	3.73E-04
14	GO:0004557: alpha-galactosidase activity	3.73E-04
15	GO:0031683: G-protein beta/gamma-subunit complex binding	3.73E-04
16	GO:0000254: C-4 methylsterol oxidase activity	5.37E-04
17	GO:0010011: auxin binding	7.14E-04
18	GO:0004576: oligosaccharyl transferase activity	7.14E-04
19	GO:1904264: ubiquitin protein ligase activity involved in ERAD pathway	7.14E-04
20	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	8.26E-04
21	GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity	9.02E-04
22	GO:0004861: cyclin-dependent protein serine/threonine kinase inhibitor activity	1.10E-03
23	GO:0051117: ATPase binding	1.10E-03
24	GO:0004747: ribokinase activity	1.31E-03
25	GO:0035064: methylated histone binding	1.78E-03
26	GO:0008889: glycerophosphodiester phosphodiesterase activity	2.29E-03
27	GO:0047617: acyl-CoA hydrolase activity	2.56E-03
28	GO:0008047: enzyme activator activity	2.85E-03
29	GO:0004129: cytochrome-c oxidase activity	3.14E-03
30	GO:0000049: tRNA binding	3.44E-03
31	GO:0003725: double-stranded RNA binding	3.76E-03
32	GO:0004089: carbonate dehydratase activity	3.76E-03
33	GO:0004175: endopeptidase activity	4.08E-03
34	GO:0043130: ubiquitin binding	5.10E-03
35	GO:0003714: transcription corepressor activity	5.10E-03
36	GO:0019843: rRNA binding	5.12E-03
37	GO:0003756: protein disulfide isomerase activity	6.98E-03
38	GO:0003727: single-stranded RNA binding	6.98E-03
39	GO:0004197: cysteine-type endopeptidase activity	9.96E-03
40	GO:0008237: metallopeptidase activity	1.14E-02
41	GO:0015250: water channel activity	1.23E-02
42	GO:0016787: hydrolase activity	1.33E-02
43	GO:0004806: triglyceride lipase activity	1.38E-02
44	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	1.59E-02
45	GO:0030145: manganese ion binding	1.65E-02
46	GO:0050897: cobalt ion binding	1.65E-02
47	GO:0003993: acid phosphatase activity	1.81E-02
48	GO:0042393: histone binding	1.93E-02
49	GO:0004364: glutathione transferase activity	2.05E-02
50	GO:0005515: protein binding	2.08E-02
51	GO:0051537: 2 iron, 2 sulfur cluster binding	2.23E-02
52	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.35E-02
53	GO:0004842: ubiquitin-protein transferase activity	2.71E-02
54	GO:0008234: cysteine-type peptidase activity	2.80E-02
55	GO:0022857: transmembrane transporter activity	3.20E-02
56	GO:0015035: protein disulfide oxidoreductase activity	3.42E-02
57	GO:0046872: metal ion binding	4.45E-02
58	GO:0008565: protein transporter activity	4.46E-02

Rank	GO Term	Adjusted P value
1	GO:0000323: lytic vacuole	4.33E-06
2	GO:0005849: mRNA cleavage factor complex	5.37E-04
3	GO:0036513: Derlin-1 retrotranslocation complex	5.37E-04
4	GO:0005746: mitochondrial respiratory chain	9.02E-04
5	GO:0008250: oligosaccharyltransferase complex	9.02E-04
6	GO:0030904: retromer complex	1.10E-03
7	GO:0031463: Cul3-RING ubiquitin ligase complex	1.10E-03
8	GO:0005771: multivesicular body	1.10E-03
9	GO:0045273: respiratory chain complex II	1.78E-03
10	GO:0005749: mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)	1.78E-03
11	GO:0000421: autophagosome membrane	1.78E-03
12	GO:0005763: mitochondrial small ribosomal subunit	2.29E-03
13	GO:0005747: mitochondrial respiratory chain complex I	3.52E-03
14	GO:0045271: respiratory chain complex I	5.46E-03
15	GO:0005773: vacuole	5.53E-03
16	GO:0031410: cytoplasmic vesicle	6.20E-03
17	GO:0005783: endoplasmic reticulum	9.43E-03
18	GO:0031902: late endosome membrane	1.99E-02
19	GO:0031966: mitochondrial membrane	2.47E-02
20	GO:0005829: cytosol	3.00E-02
21	GO:0005834: heterotrimeric G-protein complex	3.07E-02
22	GO:0005789: endoplasmic reticulum membrane	3.07E-02
23	GO:0005654: nucleoplasm	3.85E-02
24	GO:0005777: peroxisome	4.08E-02
25	GO:0005737: cytoplasm	4.53E-02