gene detail

Gene description

TAIR ID: AT4G38960

Short description: B-box type zinc finger family protein

Pathogen responsiveness: -1.01

General responsiveness: -2.21

Orthologous

Rice:

OS09G0527900 OS04G0540200

Maize:

GRMZM2G422644

Wheat: No orthologous gene

GO biological process

negative regulation of photomorphogenesis, circadian rhythm, regulation of transcription, DNA-templated, vegetative to reproductive phase transition of meristem, transcription, photomorphogenesis

GO cellular component

nucleus, intracellular

GO molecular function

protein binding, transcription factor activity, transcription factor binding, sequence-specific DNA binding, zinc ion binding

Protein domain

Pfam	PF00643, B-box zinc finger
SMART	SM00336, BBOX

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation

Regulator:
AT5G13790, AT3G16857, AT4G16110, AT1G24260, AT4G36990

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 6

click to view PPI network

Coexpression network

GSE26679_WT_GC  view
GSE56094_WT_HRPA-  view
GSE13739_WT_GO  view
GSE56094_WT_PSTDC3000  view
GSE26679_EDR1_GC  view

Differentially expressed condition

5 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE26679	Col, WT, GC 0 h	Col, WT, GC 36 h	-2.76	4.56E-12
GSE26679	Col, edr1, GC 0 h	Col, edr1, GC 36 h	-2.73	3.80E-12
GSE37269	St0, WT, control	St0, WT, TEV 21 d	-1.65	2.65E-02
GSE52979	Col, WT, acetone	Col, WT, acetone flg22_2 h	-2.84	2.54E-06
GSE52979	Col, WT, oxo_C14_HSL	Col, WT, oxo_C14_HSL flg22_2 h	-2.86	1.94E-06